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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK961864
Clone id TST39A01NGRL0011_F06
Library
Length 576
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_F06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACAATGTCACCCACCCACCCACTCGCCAGACAGTGTAGTAGCGACAAATTGTTAAACCC
GCATTTCCTTGCATGGGTTCGCCGTGGCACACGAGCCGCAAGTAGCTGGGCGAAGGCGAT
CTTGGAGCCCCACAGAGGAAACTTGCGCGTCAGCATCTCTCAGGGAGTGAAAGAGGATTT
GTTCTGTCATCCATTGTGGTATTTTCCAAATAACAAGCCATCCTTTGAACCTCAGGATGG
CTCTAAATCTGACGACATTACACTCACCCTCTTCTCCAAGCGTATCTGCTCCTCAGAAGC
TATCGATTCTTGCCTCTGCCCTTAATGGATGTCAGCCTAACTACAAACCAAGCATAGAGG
GCCTCACTATATTACCCGTTTGAACCTTACTCCATTTCACTAGTGCATCTCACAACCTTC
AGCAAAAGCACAAGAATTGTTGAAGAGTCATCTCACTCTCAAAGGTTCACGGTCAGTCAA
AGTGCTTCCTCCACTTTGTATCCAGCGCAGCTGGCCAGTGCAGGTGAGGGAGGTGGTGAT
GATGCAAATGGTAATGATAATGGCGGTAATGATGGT
■■Homology search results ■■ -
sp_hit_id Q9CTG6
Definition sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2 OS=Mus musculus
Align length 74
Score (bit) 34.3
E-value 0.46
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961864|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_F06, 5'
         (576 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2 O...    34   0.46 
sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein ...    30   6.6  
sp|Q292U5|ESN_DROPS Protein espinas OS=Drosophila pseudoobscura ...    30   6.6  
sp|Q9U1I1|ESN_DROME Protein espinas OS=Drosophila melanogaster G...    30   6.6  

>sp|Q9CTG6|AT132_MOUSE Probable cation-transporting ATPase 13A2
           OS=Mus musculus GN=Atp13a2 PE=2 SV=2
          Length = 1169

 Score = 34.3 bits (77), Expect = 0.46
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 108 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQITSHPLNLRMALNLTTLHSPSSPSVS 287
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 165 GQRYVWMETQQAFCQVSLLDHSRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 219

Query: 288 APQKLSILA-SALN 326
               L +LA  ALN
Sbjct: 220 VKSYLQLLADEALN 233


>sp|O81211|RBOHE_ARATH Respiratory burst oxidase homolog protein E
           OS=Arabidopsis thaliana GN=RBOHE PE=2 SV=1
          Length = 948

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 5/52 (9%)
 Frame = +3

Query: 285 SAPQKLSILASALNGCQPNYK---PSIEGLT--ILPV*TLLHFTSASHNLQQ 425
           S+P++ +++ASA NG +P +K      EG+T   + + T + FT AS + ++
Sbjct: 499 SSPEQFALIASAFNGTKPTFKDLMTGAEGITGISMVILTTIAFTLASTHFRR 550


>sp|Q292U5|ESN_DROPS Protein espinas OS=Drosophila pseudoobscura
           pseudoobscura GN=esn PE=3 SV=1
          Length = 795

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 6   CHPPTHSPDSVVATNC*T-------RISLHGFAVAHEPQVAGRRRSWSPTEETCA 149
           C PP+H P + VA+   T        ++ HGF  +H  Q+  +R S S  +  CA
Sbjct: 96  CQPPSHLPLNSVASPLRTASYKTAAAVAGHGFHHSHHQQLDFQRNSQSDDDSGCA 150


>sp|Q9U1I1|ESN_DROME Protein espinas OS=Drosophila melanogaster
           GN=esn PE=2 SV=1
          Length = 785

 Score = 30.4 bits (67), Expect = 6.6
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
 Frame = +3

Query: 6   CHPPTHSPDSVVATNC*T-------RISLHGFAVAHEPQVAGRRRSWSPTEETCA 149
           C PP+H P + VA+   T        ++ HGF  +H  Q+  +R S S  +  CA
Sbjct: 96  CQPPSHLPLNSVASPLRTASYKSAAAVAGHGFHHSHHQQLDFQRNSQSDDDSGCA 150
tr_hit_id Q6G251
Definition tr|Q6G251|Q6G251_BARHE Putative uncharacterized protein OS=Bartonella henselae
Align length 64
Score (bit) 32.0
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK961864|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_F06, 5'
         (576 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6G251|Q6G251_BARHE Putative uncharacterized protein OS=Barto...    32   2.3  
tr|Q16VM1|Q16VM1_AEDAE Putative uncharacterized protein (Fragmen...    32   3.5  
tr|Q8CIJ9|Q8CIJ9_MOUSE Atp13a2 protein OS=Mus musculus GN=Atp13a...    34   5.0  
tr|A2AA78|A2AA78_MOUSE ATPase type 13A2 OS=Mus musculus GN=Atp13...    33   8.6  
tr|B3PRV4|B3PRV4_RHIE6 Putative metalloprotease protein OS=Rhizo...    33   8.6  

>tr|Q6G251|Q6G251_BARHE Putative uncharacterized protein
           OS=Bartonella henselae GN=BH14150 PE=4 SV=1
          Length = 313

 Score = 32.0 bits (71), Expect(2) = 2.3
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = +3

Query: 213 TSHPLNLRMALNLTTLHSPS---SPSVSAPQKLSILASALNGCQPNYKPSIEGLTILPV* 383
           TSHP +L + L+L+T HSP     PS+S P   S++   L+   P+  P    LT+ P  
Sbjct: 129 TSHPPSLILRLSLSTPHSPPLTLHPSLSTPHSPSLILH-LSSSTPHSPP----LTLHPSL 183

Query: 384 TLLH 395
           ++ H
Sbjct: 184 SISH 187



 Score = 22.7 bits (47), Expect(2) = 2.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 452 LTLKGSRSVKVLPPLCIQRSWP 517
           LTL  S S    PPL +QRS P
Sbjct: 219 LTLHLSSSTSHPPPLILQRSLP 240


>tr|Q16VM1|Q16VM1_AEDAE Putative uncharacterized protein (Fragment)
            OS=Aedes aegypti GN=AAEL009515 PE=4 SV=1
          Length = 1157

 Score = 31.6 bits (70), Expect(2) = 3.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = +3

Query: 252  TTLHSPSSPSVSAPQKLSILASALNGCQPNYKPSIEGLTI 371
            TT HSP+SP  ++ +K S  A ++N C  + +P +   T+
Sbjct: 925  TTTHSPNSPDCASSEKSSGSADSMNMCVSSSEPDLVSPTL 964



 Score = 22.3 bits (46), Expect(2) = 3.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 421  SKSTRIVEESSHSQRFTVSQSASSTL 498
            SK  R+   SSH Q    ++S+SST+
Sbjct: 996  SKIRRMQTSSSHQQPSAYTRSSSSTV 1021


>tr|Q8CIJ9|Q8CIJ9_MOUSE Atp13a2 protein OS=Mus musculus GN=Atp13a2
           PE=2 SV=1
          Length = 650

 Score = 34.3 bits (77), Expect = 5.0
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 108 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQITSHPLNLRMALNLTTLHSPSSPSVS 287
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 157 GQRYVWMETQQAFCQVSLLDHSRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 211

Query: 288 APQKLSILA-SALN 326
               L +LA  ALN
Sbjct: 212 VKSYLQLLADEALN 225


>tr|A2AA78|A2AA78_MOUSE ATPase type 13A2 OS=Mus musculus GN=Atp13a2
           PE=3 SV=1
          Length = 1169

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 108 GRRRSWSPTEETCASASLRE*KRICSVIHCGIFQITSHPLNLRMALNLTTLHSPSSPSVS 287
           G+R  W  T++     SL +  R C  +HC     +S  L+L+      T++ P+  S+ 
Sbjct: 165 GQRYVWMETQQAFCQVSLLDHGRTCDDVHC-----SSSGLSLQDQATRKTIYGPNVISIP 219

Query: 288 APQKLSILA-SALN 326
               L +LA  ALN
Sbjct: 220 VKSYLQLLADEALN 233


>tr|B3PRV4|B3PRV4_RHIE6 Putative metalloprotease protein
           OS=Rhizobium etli (strain CIAT 652) GN=RHECIAT_CH0004316
           PE=4 SV=1
          Length = 513

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 23/50 (46%), Positives = 31/50 (62%), Gaps = 13/50 (26%)
 Frame = +3

Query: 246 NLTTLHSP--SSPSVSAPQK-------LSILASALNGCQ----PNYKPSI 356
           +LTT  SP  SS ++SAP++       LS +A ALNGCQ     +Y+PSI
Sbjct: 8   SLTTWKSPALSSDAISAPRRFARRLMLLSAIAMALNGCQSLIEQSYQPSI 57