DK961887 |
Clone id |
TST39A01NGRL0011_G05 |
Library |
TST39 |
Length |
648 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_G05. 5' end sequence. |
Accession |
DK961887 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL77Contig1 |
Sequence |
CAGCTTCTTTCGAGCTCCACCGGCGCCATGGTGAAATACTCCAGGGAGCCTGATAATATC ACAAAAGCTTGTAAGTCTAGAGGTTCTGACCTCCGTGTGCACTTTAAGAACACCCGCGAG GCAGCACAAGCAATCAAGAAACTTGACCTTGCAAAGGCCAAAAGGTATTTGGAAGATGTG GTGGCCCACAAGCAGGCTATCCCTTTCCGCCGTTTCTGTGGTGGCGTCGGTAGAACAGCC CAAGCAAAGGCCCGCCATTCTAATGGGCAGGGTAGGTGGCCTGTGAAGTCCGCCCAGTTC CTTCTAGGTTTGCTGAAAAATGCTGAGAGCAATGCAGAGACAAAGGGGCTGGATGTAGAT ACACTGTATGTTTCTCTCATTCACGTCAACAAGGCTCAGAAGCAGAGGAGACGTACCTAC CGTGCCCACGGTCGCATCAATCCGTACATGTCTTCCCCTTGCCACATTGAGTTAATTCTT GCTGAGAAGGAAGCCCCTGTGAAGAAAGAGGCGGAGTCTTCAGGAAAGCGGCCTCAGAAA GGTCCAGCACGCCTCCGCAGTGGCGCCTCCTCTTAGAAATTTCATGTTATCAGCAGCAGT TGACAAGTTGGTTCTGTGCACAAGATGGCAGGACTGCTGCCCATTTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q93VI3 |
Definition |
sp|Q93VI3|RL171_ARATH 60S ribosomal protein L17-1 OS=Arabidopsis thaliana |
Align length |
151 |
Score (bit) |
261.0 |
E-value |
2.0e-69 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SN83 |
Definition |
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
180 |
Score (bit) |
281.0 |
E-value |
2.0e-74 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961887|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_G05, 5' (648 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella paten... 281 2e-74 tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomit... 278 2e-73 tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomit... 277 4e-73 tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomit... 277 5e-73 tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea... 275 1e-72 tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea... 275 2e-72 tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea... 274 3e-72 tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella paten... 272 1e-71 tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genom... 268 2e-70 tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Popul... 266 1e-69 tr|A9PJV5|A9PJV5_POPJC Putative uncharacterized protein OS=Popul... 265 1e-69 tr|A9PA96|A9PA96_POPTR Putative uncharacterized protein OS=Popul... 265 1e-69 tr|A5B412|A5B412_VITVI Putative uncharacterized protein OS=Vitis... 265 1e-69 tr|A9PBU5|A9PBU5_POPTR Putative uncharacterized protein OS=Popul... 263 5e-69 tr|A7QP85|A7QP85_VITVI Chromosome chr1 scaffold_136, whole genom... 263 5e-69 tr|B3TM08|B3TM08_ELAGV Ribosomal protein OS=Elaeis guineensis va... 263 9e-69 tr|Q947H2|Q947H2_PETHY Ribosomal protein OS=Petunia hybrida GN=P... 262 1e-68 tr|B3TM07|B3TM07_ELAGV Ribosomal protein L17 OS=Elaeis guineensi... 262 1e-68 tr|A9PCW9|A9PCW9_POPTR Putative uncharacterized protein OS=Popul... 262 1e-68 tr|Q307X7|Q307X7_SOLTU Ribosomal protein PETRP-like OS=Solanum t... 260 4e-68 tr|B6T595|B6T595_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 260 4e-68 tr|Q0WRE5|Q0WRE5_ARATH Ribosomal protein L17-like protein OS=Ara... 260 6e-68 tr|A7QP86|A7QP86_VITVI Chromosome chr1 scaffold_136, whole genom... 260 6e-68 tr|Q6K1W6|Q6K1W6_ORYSJ Os09g0258600 protein OS=Oryza sativa subs... 259 1e-67 tr|A2YZ23|A2YZ23_ORYSI Putative uncharacterized protein OS=Oryza... 259 1e-67 tr|B4FHE4|B4FHE4_MAIZE Putative uncharacterized protein OS=Zea m... 259 1e-67 tr|B4FNT0|B4FNT0_MAIZE Putative uncharacterized protein OS=Zea m... 258 2e-67 tr|B6UDY2|B6UDY2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 258 3e-67 tr|B6T1L4|B6T1L4_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 257 4e-67 tr|B6SJH2|B6SJH2_MAIZE 60S ribosomal protein L17 OS=Zea mays PE=... 257 5e-67
>tr|A9SN83|A9SN83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_165821 PE=3 SV=1 Length = 186
Score = 281 bits (720), Expect = 2e-74 Identities = 144/180 (80%), Positives = 152/180 (84%), Gaps = 1/180 (0%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKY+R+PDN TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQA+PF Sbjct: 1 MVKYARDPDNSTKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAVPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VS I V Sbjct: 61 RRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELIL-XXXXXXXXXXXXSSGKRPQKGPARLRSG 564 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL S K +K RLRSG Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEAPVAKAVEVSEPKTRRKDQGRLRSG 180
>tr|A9TXV0|A9TXV0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_152415 PE=3 SV=1 Length = 190
Score = 278 bits (711), Expect = 2e-73 Identities = 136/150 (90%), Positives = 142/150 (94%) Frame = +1
Query: 31 VKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFR 210 VKY+REPDN TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFR Sbjct: 2 VKYAREPDNATKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFR 61
Query: 211 RFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHVN 390 RFCGGVGRTAQAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VS I VN Sbjct: 62 RFCGGVGRTAQAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVN 121
Query: 391 KAQKQRRRTYRAHGRINPYMSSPCHIELIL 480 +AQKQRRRTYRAHGRINPYMSSPCHIEL+L Sbjct: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELVL 151
>tr|A9SN82|A9SN82_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_132604 PE=3 SV=1 Length = 229
Score = 277 bits (709), Expect = 4e-73 Identities = 136/150 (90%), Positives = 142/150 (94%) Frame = +1
Query: 31 VKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFR 210 VKY+R+PDN TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFR Sbjct: 1 VKYARDPDNATKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFR 60
Query: 211 RFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHVN 390 RFCGGVGRTAQAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VS I VN Sbjct: 61 RFCGGVGRTAQAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVN 120
Query: 391 KAQKQRRRTYRAHGRINPYMSSPCHIELIL 480 +AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 121 QAQKQRRRTYRAHGRINPYMSSPCHIELIL 150
>tr|A9S035|A9S035_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_122013 PE=3 SV=1 Length = 174
Score = 277 bits (708), Expect = 5e-73 Identities = 136/150 (90%), Positives = 142/150 (94%) Frame = +1
Query: 31 VKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPFR 210 VKY+R+PDN TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPFR Sbjct: 2 VKYARDPDNSTKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPFR 61
Query: 211 RFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHVN 390 RFCGGVGRTAQAKARHSNGQGRWPVKSA FLLGLLKNAESNAE KGLDVDTL VS I VN Sbjct: 62 RFCGGVGRTAQAKARHSNGQGRWPVKSATFLLGLLKNAESNAEVKGLDVDTLVVSHIQVN 121
Query: 391 KAQKQRRRTYRAHGRINPYMSSPCHIELIL 480 +AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 122 QAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A9NT14|A9NT14_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 275 bits (704), Expect = 1e-72 Identities = 134/151 (88%), Positives = 141/151 (93%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKYSREPDN TK+CK+RGSDLRVHFKNTRE AQA+KKL LAKAK YLEDV+AHKQAIPF Sbjct: 1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAQAVKKLPLAKAKAYLEDVLAHKQAIPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAK+RHSNGQGRWPVKS QFLL LLKNAESNAE KGLDVD LY+S I V Sbjct: 61 RRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELIL 480 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A9NT26|A9NT26_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 275 bits (702), Expect = 2e-72 Identities = 140/182 (76%), Positives = 154/182 (84%), Gaps = 2/182 (1%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKYSREP N TK+ K+RGSDLRVHFKNTRE AQA+KKL L KAKRYLEDV+AHKQAIPF Sbjct: 1 MVKYSREPGNPTKSAKARGSDLRVHFKNTRETAQAVKKLSLTKAKRYLEDVIAHKQAIPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAK+R+SNGQGRWPVKSA+FLLGLLKNAESNAE KGLDVDTLY+S I V Sbjct: 61 RRFCGGVGRTAQAKSRNSNGQGRWPVKSAEFLLGLLKNAESNAEVKGLDVDTLYISHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELILXXXXXXXXXXXXS--SGKRPQKGPARLRS 561 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL + + ++P+K LRS Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEAPVKKEAETQIAPRKPRKAQT-LRS 179
Query: 562 GA 567 GA Sbjct: 180 GA 181
>tr|A9NYW9|A9NYW9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 183
Score = 274 bits (701), Expect = 3e-72 Identities = 133/151 (88%), Positives = 141/151 (93%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKYSREPDN TK+CK+RGSDLRVHFKNTRE AQA+KKL +AKAK YLEDV+AHKQAIPF Sbjct: 1 MVKYSREPDNPTKSCKARGSDLRVHFKNTRETAQAVKKLPVAKAKAYLEDVLAHKQAIPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAK+RHSNGQGRWPVKS QFLL LLKNAESNAE KGLDVD LY+S I V Sbjct: 61 RRFCGGVGRTAQAKSRHSNGQGRWPVKSVQFLLQLLKNAESNAEVKGLDVDALYISHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELIL 480 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELIL 151
>tr|A9RQX8|A9RQX8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_177216 PE=3 SV=1 Length = 187
Score = 272 bits (696), Expect = 1e-71 Identities = 140/181 (77%), Positives = 151/181 (83%), Gaps = 2/181 (1%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKY+R+P N TKACK+RGSDLRVHFKNTREAAQAIK ++LAKAKRYLEDV AHKQAIPF Sbjct: 1 MVKYARDPVNATKACKARGSDLRVHFKNTREAAQAIKHMELAKAKRYLEDVCAHKQAIPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAKARHSNGQGRWPVKSA FLL LLKNAESNAE KGLDVD+L VS I V Sbjct: 61 RRFCGGVGRTAQAKARHSNGQGRWPVKSATFLLDLLKNAESNAEVKGLDVDSLVVSHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELIL--XXXXXXXXXXXXSSGKRPQKGPARLRS 561 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL S+ + ++ RLRS Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEAPVKKEVEEVSAPRSNKRDQGRLRS 180
Query: 562 G 564 G Sbjct: 181 G 181
>tr|A7PHG3|A7PHG3_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00017930001 PE=3 SV=1 Length = 216
Score = 268 bits (686), Expect = 2e-70 Identities = 138/182 (75%), Positives = 149/182 (81%), Gaps = 1/182 (0%) Frame = +1
Query: 25 AMVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIP 204 AMVKYSREPDN TK+CK+RGSDLRVHFKNTRE A AI+KL L KAKRYLEDV+AHKQAIP Sbjct: 33 AMVKYSREPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLRLTKAKRYLEDVLAHKQAIP 92
Query: 205 FRRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIH 384 F+RFC GVGRTAQAK RHSNGQGRWPVKSA+F+L LLKNAESNA+ KGLDVD+LYVS I Sbjct: 93 FQRFCRGVGRTAQAKNRHSNGQGRWPVKSAKFILDLLKNAESNADLKGLDVDSLYVSHIQ 152
Query: 385 VNKAQKQRRRTYRAHGRINPYMSSPCHIELILXXXXXXXXXXXXSS-GKRPQKGPARLRS 561 VN+AQKQRRRTYRAHGRINPYMSSPCHIELIL + R K LRS Sbjct: 153 VNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVQKEPDTQLAPRKTKKTQALRS 212
Query: 562 GA 567 GA Sbjct: 213 GA 214
>tr|A9PE02|A9PE02_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 181
Score = 266 bits (679), Expect = 1e-69 Identities = 135/180 (75%), Positives = 147/180 (81%) Frame = +1
Query: 28 MVKYSREPDNITKACKSRGSDLRVHFKNTREAAQAIKKLDLAKAKRYLEDVVAHKQAIPF 207 MVKYSREPDN TK+CK+RGSDLRVHFKNTRE A +I+K+ L KAKRYLE V+AHKQAIPF Sbjct: 1 MVKYSREPDNQTKSCKARGSDLRVHFKNTRETAFSIRKMPLDKAKRYLEGVLAHKQAIPF 60
Query: 208 RRFCGGVGRTAQAKARHSNGQGRWPVKSAQFLLGLLKNAESNAETKGLDVDTLYVSLIHV 387 RRFCGGVGRTAQAK RHSNGQGRWP KSA+F+L LLKNAESNAE KGLDVD LY+S I V Sbjct: 61 RRFCGGVGRTAQAKNRHSNGQGRWPAKSAKFILDLLKNAESNAEVKGLDVDALYISHIQV 120
Query: 388 NKAQKQRRRTYRAHGRINPYMSSPCHIELILXXXXXXXXXXXXSSGKRPQKGPARLRSGA 567 N+AQKQRRRTYRAHGRINPYMSSPCHIELIL + P+K LRSGA Sbjct: 121 NQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEADTQ-IAPRKPKGALRSGA 179
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