DK961900 |
Clone id |
TST39A01NGRL0011_G18 |
Library |
TST39 |
Length |
795 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_G18. 5' end sequence. |
Accession |
DK961900 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1717Contig1 |
Sequence |
ATCACCATCTATTTCCTGTTGCATCATTTGAGGAAGTCGTGCCAACTGTTGCACCATCTA GGCTCCCAAAGAGCTGCTTTGGATGCCAGCAAGACCTTCCCGTTGGAGGAAGCAAGGTGA CGGGTGTGCGAGTGGTTTGCCCCAGGTGCAAGCAACATTTTTGTTTTGATTGTGATGTTT ATATCCACGAAAGTCTGCATAACTGTCCTGGGTGTGAAAGCATCCCTGATTATGGATCAT TTGTCCAGCAATGAAGAAACTTCAGATTCTGAAGGGCAGCTGGTAGGTATGGTGCTTGAT TTTTACCGAGCTGCTGCACCACTAATGTGGTTGCATTCACGAGCTCATGCAGAAAGATGC TGGCAAAAACTTTGGCCTGTGTTGATATGGGTGGAGGCTGTCAGCTCTGAGGATGAAGTG CCGGTACAAGGTTATACGTTTGTGTATTGTCTTCACCTTTTCTGATTCATGGGCCTCATT TGCAATGGTGGGTTTGCAAGACTATGTAGCAAATCTATTTGCCCTGATGCTTCCCATGGT GAAGTAAGCCTAACCCTTGAGGTTTTGATCTTATCGAGGGGTTTTGCTTTTAGTCATGTT TGGGCATTGCTTCCGGGACTTGGAATGATTACGTGCAGCATGCGCATGTGGGCAACAGTT GTCTGGGTTCTTTGATTTGCCGGCACTTCCAGGTTTTGGAACTTTTTCCCCAGCCTTTCA CCCTTGGCAGTAATTTTTGGCGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04673 |
Definition |
sp|Q04673|SSL1_YEAST Suppressor of stem-loop protein 1 OS=Saccharomyces cerevisiae |
Align length |
80 |
Score (bit) |
83.6 |
E-value |
1.0e-15 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SFF5 |
Definition |
tr|A9SFF5|A9SFF5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
76 |
Score (bit) |
115.0 |
E-value |
2.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961900|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_G18, 5' (746 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SFF5|A9SFF5_PHYPA Predicted protein OS=Physcomitrella paten... 115 2e-24 tr|A7NZG2|A7NZG2_VITVI Chromosome chr6 scaffold_3, whole genome ... 101 6e-20 tr|A5B9J1|A5B9J1_VITVI Putative uncharacterized protein OS=Vitis... 101 6e-20 tr|Q9ZVN9|Q9ZVN9_ARATH T7A14.8 protein (Putative transcription f... 97 1e-18 tr|Q0WLZ8|Q0WLZ8_ARATH Putative transcription factor OS=Arabidop... 97 1e-18 tr|B4G0C7|B4G0C7_MAIZE Putative uncharacterized protein OS=Zea m... 96 2e-18 tr|Q7XM94|Q7XM94_ORYSJ OSJNBa0043L24.23 protein OS=Oryza sativa ... 95 4e-18 tr|Q01I82|Q01I82_ORYSA OSIGBa0101P20.13 protein OS=Oryza sativa ... 95 4e-18 tr|Q6B237|Q6B237_YEAST YLR005W OS=Saccharomyces cerevisiae GN=SS... 84 1e-14 tr|B5VMU6|B5VMU6_YEAS6 YLR005Wp-like protein OS=Saccharomyces ce... 84 1e-14 tr|B3LSX8|B3LSX8_YEAS1 Suppressor of stem-loop protein 1 OS=Sacc... 84 1e-14 tr|Q6CNV5|Q6CNV5_KLULA KLLA0E09615p OS=Kluyveromyces lactis GN=K... 83 2e-14 tr|A7A0R0|A7A0R0_YEAS7 Transcription initiation factor TFIIH sub... 82 3e-14 tr|A7TJ61|A7TJ61_VANPO Putative uncharacterized protein OS=Vande... 77 1e-12 tr|Q6FTA5|Q6FTA5_CANGA Similar to uniprot|Q04673 Saccharomyces c... 76 2e-12 tr|A3LN57|A3LN57_PICST Predicted protein OS=Pichia stipitis GN=P... 76 3e-12 tr|Q9VNP8|Q9VNP8_DROME Ssl1 OS=Drosophila melanogaster GN=Ssl1 P... 75 4e-12 tr|B4QLB8|B4QLB8_DROSI GD15058 OS=Drosophila simulans GN=GD15058... 75 4e-12 tr|B4IB56|B4IB56_DROSE GM22477 OS=Drosophila sechellia GN=GM2247... 75 4e-12 tr|Q5ALX0|Q5ALX0_CANAL Putative uncharacterized protein SSL1 OS=... 75 6e-12 tr|A8IDI5|A8IDI5_CHLRE Transcription factor TFIIH, 44 kDa subuni... 74 1e-11 tr|A5DUU6|A5DUU6_LODEL Suppressor of stem-loop protein 1 OS=Lodd... 73 2e-11 tr|Q7PPS5|Q7PPS5_ANOGA AGAP010559-PA OS=Anopheles gambiae GN=AGA... 73 2e-11 tr|B4LDP4|B4LDP4_DROVI GJ11798 OS=Drosophila virilis GN=GJ11798 ... 73 2e-11 tr|A8PUU2|A8PUU2_MALGO Putative uncharacterized protein OS=Malas... 72 3e-11 tr|B4PIR4|B4PIR4_DROYA GE22646 OS=Drosophila yakuba GN=GE22646 P... 72 4e-11 tr|B4KYL1|B4KYL1_DROMO GI13436 OS=Drosophila mojavensis GN=GI134... 72 4e-11 tr|B3NEG9|B3NEG9_DROER GG16285 OS=Drosophila erecta GN=GG16285 P... 72 5e-11 tr|Q6BZG1|Q6BZG1_DEBHA DEHA2A01606p OS=Debaryomyces hansenii GN=... 71 7e-11 tr|A5DNU1|A5DNU1_PICGU Putative uncharacterized protein OS=Pichi... 71 7e-11
>tr|A9SFF5|A9SFF5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106349 PE=4 SV=1 Length = 394
Score = 115 bits (289), Expect = 2e-24 Identities = 51/76 (67%), Positives = 58/76 (76%), Gaps = 3/76 (3%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPS---RLPKSCFGCQQDLPVGGSKVTGVRVVCPRCKQHFCFDC 173 HHLFPV+ FEEV + + L KSC+GC Q+LP G KV GVR+ CPRC+QHFCFDC Sbjct: 309 HHLFPVSPFEEVENLASANGRQSLSKSCYGCLQELPTPGGKVKGVRLECPRCRQHFCFDC 368
Query: 174 DVYIHESLHNCPGCES 221 D YIHESLHNCPGCES Sbjct: 369 DNYIHESLHNCPGCES 384
>tr|A7NZG2|A7NZG2_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024501001 PE=4 SV=1 Length = 433
Score = 101 bits (251), Expect = 6e-20 Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 3/76 (3%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPS---RLPKSCFGCQQDLPVGGSKVTGVRVVCPRCKQHFCFDC 173 HHLFP+ F+EV ++ + R ++CFGCQ+ L + G+K T + V CP+CKQHFC DC Sbjct: 347 HHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPT-LCVACPKCKQHFCLDC 405
Query: 174 DVYIHESLHNCPGCES 221 D+YIHESLHNCPGCES Sbjct: 406 DIYIHESLHNCPGCES 421
>tr|A5B9J1|A5B9J1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_011714 PE=4 SV=1 Length = 199
Score = 101 bits (251), Expect = 6e-20 Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 3/76 (3%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPS---RLPKSCFGCQQDLPVGGSKVTGVRVVCPRCKQHFCFDC 173 HHLFP+ F+EV ++ + R ++CFGCQ+ L + G+K T + V CP+CKQHFC DC Sbjct: 113 HHLFPIPPFDEVSLSLLNNPHQRSSRACFGCQESLLIPGNKPT-LCVACPKCKQHFCLDC 171
Query: 174 DVYIHESLHNCPGCES 221 D+YIHESLHNCPGCES Sbjct: 172 DIYIHESLHNCPGCES 187
>tr|Q9ZVN9|Q9ZVN9_ARATH T7A14.8 protein (Putative transcription factor) (P44/SSL1-like protein) OS=Arabidopsis thaliana GN=At1g05055 PE=2 SV=1 Length = 421
Score = 96.7 bits (239), Expect = 1e-18 Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 5/79 (6%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAP-----SRLPKSCFGCQQDLPVGGSKVTGVRVVCPRCKQHFCF 167 HHLFP+A F+EV P ++ +L KSCFGCQQ L G+K V C +CK +FC Sbjct: 334 HHLFPIAPFDEV-PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPC-VTCRKCKHYFCL 391
Query: 168 DCDVYIHESLHNCPGCESI 224 DCD+YIHESLHNCPGCESI Sbjct: 392 DCDIYIHESLHNCPGCESI 410
>tr|Q0WLZ8|Q0WLZ8_ARATH Putative transcription factor OS=Arabidopsis thaliana GN=At1g05055 PE=2 SV=1 Length = 196
Score = 96.7 bits (239), Expect = 1e-18 Identities = 46/79 (58%), Positives = 55/79 (69%), Gaps = 5/79 (6%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAP-----SRLPKSCFGCQQDLPVGGSKVTGVRVVCPRCKQHFCF 167 HHLFP+A F+EV P ++ +L KSCFGCQQ L G+K V C +CK +FC Sbjct: 109 HHLFPIAPFDEV-PALSSLNDNRRKLGKSCFGCQQSLIGAGNKPVPC-VTCRKCKHYFCL 166
Query: 168 DCDVYIHESLHNCPGCESI 224 DCD+YIHESLHNCPGCESI Sbjct: 167 DCDIYIHESLHNCPGCESI 185
>tr|B4G0C7|B4G0C7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 428
Score = 96.3 bits (238), Expect = 2e-18 Identities = 46/78 (58%), Positives = 53/78 (67%), Gaps = 5/78 (6%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPSRLPKS---CFGCQQDL--PVGGSKVTGVRVVCPRCKQHFCF 167 HHLFPV F+EV P P+R+ + CF CQQ L P G S + V CP+C QHFC Sbjct: 350 HHLFPVPPFDEVTPV--PNRIQRGGQICFSCQQSLYNPDGQSNL---HVRCPKCNQHFCL 404
Query: 168 DCDVYIHESLHNCPGCES 221 DCD+YIHESLHNCPGCES Sbjct: 405 DCDIYIHESLHNCPGCES 422
>tr|Q7XM94|Q7XM94_ORYSJ OSJNBa0043L24.23 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0043L24.23 PE=4 SV=1 Length = 432
Score = 95.1 bits (235), Expect = 4e-18 Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 4/77 (5%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPSRLPKS----CFGCQQDLPVGGSKVTGVRVVCPRCKQHFCFD 170 HHLFPV F+EV +V P+RL + C+GCQQ + + + V CP+C QHFC D Sbjct: 353 HHLFPVQPFDEV-SSVHPNRLGQKGGQKCYGCQQSF-INPDSQSSLHVRCPKCNQHFCLD 410
Query: 171 CDVYIHESLHNCPGCES 221 CD+YIHESLHNCPGCES Sbjct: 411 CDIYIHESLHNCPGCES 427
>tr|Q01I82|Q01I82_ORYSA OSIGBa0101P20.13 protein OS=Oryza sativa GN=OSIGBa0101P20.13 PE=4 SV=1 Length = 432
Score = 95.1 bits (235), Expect = 4e-18 Identities = 43/77 (55%), Positives = 53/77 (68%), Gaps = 4/77 (5%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPSRLPKS----CFGCQQDLPVGGSKVTGVRVVCPRCKQHFCFD 170 HHLFPV F+EV +V P+RL + C+GCQQ + + + V CP+C QHFC D Sbjct: 353 HHLFPVQPFDEV-SSVHPNRLGQKGGQKCYGCQQSF-INPDSQSSLHVRCPKCNQHFCLD 410
Query: 171 CDVYIHESLHNCPGCES 221 CD+YIHESLHNCPGCES Sbjct: 411 CDIYIHESLHNCPGCES 427
>tr|Q6B237|Q6B237_YEAST YLR005W OS=Saccharomyces cerevisiae GN=SSL1 PE=2 SV=1 Length = 461
Score = 83.6 bits (205), Expect = 1e-14 Identities = 41/80 (51%), Positives = 47/80 (58%), Gaps = 5/80 (6%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPSRLPKSCFGCQQDLPV-----GGSKVTGVRVVCPRCKQHFCF 167 HHL P+ +F EV PT R + CF CQ P+ G +T R C CKQ FC Sbjct: 381 HHLMPLKTFAEV-PTTEKFR-SEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCV 438
Query: 168 DCDVYIHESLHNCPGCESIP 227 DCDV+IHE LHNCPGCES P Sbjct: 439 DCDVFIHEILHNCPGCESKP 458
>tr|B5VMU6|B5VMU6_YEAS6 YLR005Wp-like protein OS=Saccharomyces cerevisiae (strain AWRI1631) GN=AWRI1631_120560 PE=4 SV=1 Length = 371
Score = 83.6 bits (205), Expect = 1e-14 Identities = 41/80 (51%), Positives = 47/80 (58%), Gaps = 5/80 (6%) Frame = +3
Query: 3 HHLFPVASFEEVVPTVAPSRLPKSCFGCQQDLPV-----GGSKVTGVRVVCPRCKQHFCF 167 HHL P+ +F EV PT R + CF CQ P+ G +T R C CKQ FC Sbjct: 291 HHLMPLKTFAEV-PTTEKFR-SEDCFSCQSRFPILKNHKNGKLLTSSRYRCEDCKQEFCV 348
Query: 168 DCDVYIHESLHNCPGCESIP 227 DCDV+IHE LHNCPGCES P Sbjct: 349 DCDVFIHEILHNCPGCESKP 368
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