DK961919 |
Clone id |
TST39A01NGRL0011_H13 |
Library |
TST39 |
Length |
782 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_H13. 5' end sequence. |
Accession |
DK961919 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL279Contig1 |
Sequence |
AGCGACTTTGGTGGCGGGGACGAGCCGGGGAGCATGGCATCTCTTGTGAAAGCTCCTGCA TCCCCGTGCACCGCTTCCACCACTGCTCATTTCCAGCAGAGTCTACCGCAGCAGAGTCGG AGTTTGCCATTCTTGAGTCGCTCTGGCACAGGCTTAGCACTCTCCTCCAGTGCCTATCAG TGTAGCAGTTCAAAGTCTTCATTTGTGGGACTCCAAACAAAGCTTGAGAATCTCATCTTG CATTCGTCTTCAGCCACTGGATCGGGCAGTACCCGGGCAGTAGTTTCCATGTCAAAACCA GTTATTCAGTTTATCAAAGGCGTGAACGAGCAAACTATTCCTGATGTTTCTCTTACAAGA TCTAAAGATGGGACTAATGGAGTTGCAACTTTTAGCTTTGAGCAGCCGTCAGTTTTTGAT GCTGCTGGAGAGTTGAGGGACATCACAGGGCTTTTCATGCAAGATGAAGAGGGTGTTCTT TCAACAGTTGATGTCAGTGCCAAGTTTGTTAACGGAAAACCTTCAAGGATTGAGGCTCGG TACATAATGAGAACATTGAAGGACTGGGACAGGTTCATGCGCTTCATGGAGAGATATGCC GAAGCCAATGGTCTTGGATTTGTGAAGAAGTGAATAGCAGAGCCTGTGTTTTTTTTGACA TCCTTTCTGCACCTTGTGCCTTATACTCAATTTCAAGAGGGAATATAATGGTAATTCTCC ATGGTAATTTTGGAAAAAAAAGTTGGAGTATTTGCAATTGGCAAAAAAAAAAAAAAAAAA AA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q0JG75 |
Definition |
sp|Q0JG75|PSB28_ORYSJ Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica |
Align length |
117 |
Score (bit) |
176.0 |
E-value |
1.0e-43 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961919|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_H13, 5' (762 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q0JG75|PSB28_ORYSJ Photosystem II reaction center PSB28 prote... 176 1e-43 sp|Q8W0Y8|PSB28_ARATH Photosystem II reaction center PSB28 prote... 166 2e-40 sp|Q00UI6|PSB28_OSTTA Photosystem II reaction center psb28 prote... 149 2e-35 sp|O78418|PSB28_GUITH Photosystem II reaction center psb28 prote... 140 8e-33 sp|Q5MZB9|PSB28_SYNP6 Photosystem II reaction center psb28 prote... 135 2e-31 sp|Q31ML0|PSB28_SYNE7 Photosystem II reaction center psb28 prote... 135 2e-31 sp|B0CE32|PSB28_ACAM1 Photosystem II reaction center psb28 prote... 135 3e-31 sp|A0T0H5|PSB28_PHATR Photosystem II reaction center psb28 prote... 134 5e-31 sp|Q6B8Z7|PSB28_GRATL Photosystem II reaction center psb28 prote... 133 9e-31 sp|A0T0W9|PSB28_THAPS Photosystem II reaction center psb28 prote... 133 1e-30 sp|Q1XDE0|PSB28_PORYE Photosystem II reaction center psb28 prote... 133 1e-30 sp|P51347|PSB28_PORPU Photosystem II reaction center psb28 prote... 133 1e-30 sp|P49508|PSB28_ODOSI Photosystem II reaction center psb28 prote... 131 4e-30 sp|P48264|PSB28_CYAPA Photosystem II reaction center psb28 prote... 131 5e-30 sp|Q8DLJ8|PSB28_THEEB Photosystem II reaction center psb28 prote... 126 1e-28 sp|Q3AKD0|PSB28_SYNSC Photosystem II reaction center psb28 prote... 124 7e-28 sp|Q7U7C0|PSB28_SYNPX Photosystem II reaction center psb28 prote... 122 2e-27 sp|Q9TLZ2|PSB28_CYACA Photosystem II reaction center psb28 prote... 122 3e-27 sp|Q85G21|PSB28_CYAME Photosystem II reaction center psb28 prote... 121 4e-27 sp|Q3MFL9|PSB28_ANAVT Photosystem II reaction center psb28 prote... 121 4e-27 sp|Q8YYP5|PSB28_ANASP Photosystem II reaction center psb28 prote... 120 6e-27 sp|A5GLG6|PSB28_SYNPW Photosystem II reaction center psb28 prote... 120 8e-27 sp|Q0I9T4|PSB28_SYNS3 Photosystem II reaction center psb28 prote... 119 1e-26 sp|A2CA72|PSB28_PROM3 Photosystem II reaction center psb28 prote... 116 2e-25 sp|Q3AXG3|PSB28_SYNS9 Photosystem II reaction center psb28 prote... 114 5e-25 sp|Q7TV11|PSB28_PROMM Photosystem II reaction center psb28 prote... 114 5e-25 sp|Q112E8|PSB28_TRIEI Photosystem II reaction center psb28 prote... 114 8e-25 sp|Q55356|PSB28_SYNY3 Photosystem II reaction center psb28 prote... 112 2e-24 sp|Q7VCG9|PSB28_PROMA Photosystem II reaction center psb28 prote... 110 8e-24 sp|A2BWQ5|PSB28_PROM5 Photosystem II reaction center psb28 prote... 106 1e-22
>sp|Q0JG75|PSB28_ORYSJ Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2 Length = 180
Score = 176 bits (446), Expect = 1e-43 Identities = 82/117 (70%), Positives = 103/117 (88%) Frame = +1
Query: 280 VVSMSKPVIQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELRDITGLFM 459 V+ ++P IQFI+G +EQTIPDV LT+S+DGTNGVA F+F+QPSVFD++ EL DITG +M Sbjct: 64 VMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSAELGDITGFYM 123
Query: 460 QDEEGVLSTVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVKK 630 D+EGVL +VDVSAKFVNGKP+ IEA+Y+MRT ++WDRFMRFMERY++ANGL FVKK Sbjct: 124 IDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQANGLQFVKK 180
>sp|Q8W0Y8|PSB28_ARATH Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=1 SV=1 Length = 183
Score = 166 bits (419), Expect = 2e-40 Identities = 76/117 (64%), Positives = 99/117 (84%) Frame = +1
Query: 280 VVSMSKPVIQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELRDITGLFM 459 + M KP +QFI+G +E TIPDV LTRS+DG+NG+A FSF+QPSVFD++GE+ +ITGL+M Sbjct: 66 ITMMVKPALQFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYM 125
Query: 460 QDEEGVLSTVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVKK 630 DEEGV+ + DV+A+FVNGKP I A++IMR+ K+WDRFMRFMERY++ NGL FVKK Sbjct: 126 IDEEGVIQSTDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVKK 182
>sp|Q00UI6|PSB28_OSTTA Photosystem II reaction center psb28 protein, chloroplastic OS=Ostreococcus tauri GN=psb28 PE=3 SV=1 Length = 147
Score = 149 bits (376), Expect = 2e-35 Identities = 73/109 (66%), Positives = 86/109 (78%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELRDITGLFMQDEEGVLS 483 IQF+KG NE +P+V LTRSKDG+NG A F F P VF+ DITG+F+ DEEG +S Sbjct: 41 IQFVKGQNETAVPEVRLTRSKDGSNGTAFFIFSDPDVFENGQG--DITGMFLTDEEGEMS 98
Query: 484 TVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVKK 630 TVDV+AKFVNGKP+ IEARY+M+T DW+RFMRFMERYAE NGLGF KK Sbjct: 99 TVDVNAKFVNGKPTGIEARYVMKTEADWNRFMRFMERYAEDNGLGFSKK 147
>sp|O78418|PSB28_GUITH Photosystem II reaction center psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1 Length = 116
Score = 140 bits (353), Expect = 8e-33 Identities = 69/110 (62%), Positives = 85/110 (77%), Gaps = 1/110 (0%) Frame = +1
Query: 301 VIQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELR-DITGLFMQDEEGV 477 VIQFI+GVNE IPDV LTRS+DG+ G ATF F P V +A ++ +ITG+++ DEEG Sbjct: 3 VIQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQ 62
Query: 478 LSTVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 L T DV+A+FVNGKP IEA YIM++ +DWDRFMRFMERY+E NGL F K Sbjct: 63 LVTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTK 112
>sp|Q5MZB9|PSB28_SYNP6 Photosystem II reaction center psb28 protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psb28 PE=3 SV=1 Length = 112
Score = 135 bits (340), Expect = 2e-31 Identities = 63/109 (57%), Positives = 87/109 (79%), Gaps = 1/109 (0%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELR-DITGLFMQDEEGVL 480 IQF +G++E +PDV LTRS+DG NG ATF F++P GE+R DITG+++ D+EG L Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 481 STVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 +T +V AKF+NG+P+ +EA Y+MR+ ++WDRFMRFM+RYAEANGLGF + Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111
>sp|Q31ML0|PSB28_SYNE7 Photosystem II reaction center psb28 protein OS=Synechococcus elongatus (strain PCC 7942) GN=psb28 PE=3 SV=1 Length = 112
Score = 135 bits (340), Expect = 2e-31 Identities = 63/109 (57%), Positives = 87/109 (79%), Gaps = 1/109 (0%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELR-DITGLFMQDEEGVL 480 IQF +G++E +PDV LTRS+DG NG ATF F++P GE+R DITG+++ D+EG L Sbjct: 5 IQFTRGIDEPVVPDVRLTRSRDGQNGTATFYFDEPQAL--VGEVRQDITGMYLLDDEGEL 62
Query: 481 STVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 +T +V AKF+NG+P+ +EA Y+MR+ ++WDRFMRFM+RYAEANGLGF + Sbjct: 63 ATREVKAKFINGQPAGLEAVYLMRSPEEWDRFMRFMQRYAEANGLGFTE 111
>sp|B0CE32|PSB28_ACAM1 Photosystem II reaction center psb28 protein OS=Acaryochloris marina (strain MBIC 11017) GN=psb28 PE=3 SV=1 Length = 111
Score = 135 bits (339), Expect = 3e-31 Identities = 66/108 (61%), Positives = 88/108 (81%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELRDITGLFMQDEEGVLS 483 IQFI+GV+E+ IPDV LTR+KDG++G A F FE P++ G+L ++ G+++QDEEG L+ Sbjct: 5 IQFIRGVDEEVIPDVRLTRAKDGSSGRAIFYFENPNLIQE-GKL-EVMGMYLQDEEGELT 62
Query: 484 TVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 T+DVSAKFVNGKP IEA Y M++ ++WDRFMRFM RYAE++GLGF K Sbjct: 63 TLDVSAKFVNGKPHAIEANYDMKSEEEWDRFMRFMNRYAESHGLGFSK 110
>sp|A0T0H5|PSB28_PHATR Photosystem II reaction center psb28 protein OS=Phaeodactylum tricornutum GN=psb28 PE=3 SV=1 Length = 115
Score = 134 bits (337), Expect = 5e-31 Identities = 64/109 (58%), Positives = 84/109 (77%), Gaps = 1/109 (0%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFD-AAGELRDITGLFMQDEEGVL 480 IQFIKG++E+ +PDV LTRSKDG+ G ATF F+ P++ D + +ITG+++ DEEG+L Sbjct: 5 IQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDEEGIL 64
Query: 481 STVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 T DV+A+FVNGKP IE+ YIM++ + WDRFMRFMERY E NGL F K Sbjct: 65 ETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSK 113
>sp|Q6B8Z7|PSB28_GRATL Photosystem II reaction center psb28 protein OS=Gracilaria tenuistipitata var. liui GN=psb28 PE=3 SV=1 Length = 114
Score = 133 bits (335), Expect = 9e-31 Identities = 63/110 (57%), Positives = 83/110 (75%), Gaps = 1/110 (0%) Frame = +1
Query: 301 VIQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELR-DITGLFMQDEEGV 477 VIQFIKG+NE + DVSLTRS+DG+ G ATF F P + + E + DITG++++D+EG Sbjct: 3 VIQFIKGINETVVADVSLTRSRDGSKGTATFRFNNPDILKSGMEDKGDITGMYLKDDEGE 62
Query: 478 LSTVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 L T DVSAKF+NGKP +EA YI+++ ++WDRFMRFME+YA N L F K Sbjct: 63 LMTRDVSAKFINGKPQAVEAIYIIKSPQEWDRFMRFMEKYANENKLSFTK 112
>sp|A0T0W9|PSB28_THAPS Photosystem II reaction center psb28 protein OS=Thalassiosira pseudonana GN=psb28 PE=3 SV=1 Length = 114
Score = 133 bits (334), Expect = 1e-30 Identities = 63/109 (57%), Positives = 85/109 (77%), Gaps = 1/109 (0%) Frame = +1
Query: 304 IQFIKGVNEQTIPDVSLTRSKDGTNGVATFSFEQPSVFDAAGELR-DITGLFMQDEEGVL 480 IQFIKG++E+ +PDV LTRS+DG+ G ATF F+ ++ + + L +ITG++M DEEG+L Sbjct: 5 IQFIKGIDEKVLPDVRLTRSRDGSTGTATFLFKNANLINKSLALNGEITGMYMIDEEGIL 64
Query: 481 STVDVSAKFVNGKPSRIEARYIMRTLKDWDRFMRFMERYAEANGLGFVK 627 T DVSA+FVNGKP +E+ YIM++ + WDRFMRFMERY E+NGL F K Sbjct: 65 ETRDVSARFVNGKPQAVESIYIMKSPEAWDRFMRFMERYGESNGLAFTK 113
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NPG6 |
Definition |
tr|A9NPG6|A9NPG6_PICSI Photosystem II reaction center psb28 protein OS=Picea sitchensis |
Align length |
117 |
Score (bit) |
179.0 |
E-value |
1.0e-43 |
Report |
|