DK961928 |
Clone id |
TST39A01NGRL0011_H22 |
Library |
TST39 |
Length |
629 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_H22. 5' end sequence. |
Accession |
DK961928 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL670Contig1 |
Sequence |
GAATTACACGGAGGCTCTGCTGCTGCTTCTGTTGGGGCTCCCTCTTTCAAACCAAGAAGG TGTAATTGAGAGAGCTTACATAAGGGAGAAGGATGGAGTACTTTCCAGGACCGGGGCGGA ATCAACTCTTTGTGCCCGGGCCCGTCAATGTCCCAGAGCAAGTGCTGCGCGCAATGAACC GCAATAATGAGGATTACCGCTCTCCAGCCATGCCCACTCTATCCAAGTCGTTCCTCGAGG ATGTCAAGCGCATATTCAAAACAACTGGGGCTACCTCCTTCATCATCCCAACCACAGGGA CTGGGGCATGGGAAAGTGCATTGACAAACACACTGTCCCCAAGGGACAAGATCTTGACGT TTCGGCTCGGACAATTTAGTCTCTTGTGGGTAGACCAGATGCAGAGGCTCAACTTTGATG TGGACGTGGTGGATGTGGAATGGGGAGCTGGAATCGACCTCGGTGTGCTGCGAGACAAGC TTATTGCTGATTCTCACCATCAAATTAAAGCTGTGTGTGTGGTCCACAATGAGACTGCCA CTGGTGTAACCAATGATCTTGCTGGCATTCGAAATGTCCTCGATCGATGTAGGCATCCCG CCTTGTTCCTCGTGGATGGTGTGTCATCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
179 |
Score (bit) |
270.0 |
E-value |
6.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961928|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_H22, 5' (629 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 270 6e-72 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 191 3e-48 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 189 1e-47 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 102 2e-21 sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=... 90 8e-18 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 80 9e-15 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 71 5e-12 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 59 2e-08 sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyo... 57 8e-08 sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochon... 56 1e-07 sp|Q9KLY7|PHNW_VIBCH 2-aminoethylphosphonate--pyruvate transamin... 54 5e-07 sp|A5F049|PHNW_VIBC3 2-aminoethylphosphonate--pyruvate transamin... 54 5e-07 sp|A6L4N0|PHNW_BACV8 2-aminoethylphosphonate--pyruvate transamin... 54 9e-07 sp|P09139|SPYA_RAT Serine--pyruvate aminotransferase, mitochondr... 52 3e-06 sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto... 51 4e-06 sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo ... 51 4e-06 sp|Q7MF44|PHNW_VIBVY 2-aminoethylphosphonate--pyruvate transamin... 47 8e-05 sp|A9MWZ9|PHNW_SALPB 2-aminoethylphosphonate--pyruvate transamin... 47 8e-05 sp|Q8D3M4|PHNW_VIBVU 2-aminoethylphosphonate--pyruvate transamin... 46 2e-04 sp|Q57SD3|PHNW_SALCH 2-aminoethylphosphonate--pyruvate transamin... 46 2e-04 sp|Q87JL4|PHNW_VIBPA 2-aminoethylphosphonate--pyruvate transamin... 45 3e-04 sp|P96060|PHNW_SALTY 2-aminoethylphosphonate--pyruvate transamin... 45 3e-04 sp|Q5PFR0|PHNW_SALPA 2-aminoethylphosphonate--pyruvate transamin... 44 9e-04 sp|Q9I434|PHNW_PSEAE 2-aminoethylphosphonate--pyruvate transamin... 44 9e-04 sp|Q8Z8W6|PHNW_SALTI 2-aminoethylphosphonate--pyruvate transamin... 43 0.001 sp|A6TFW2|PHNW_KLEP7 2-aminoethylphosphonate--pyruvate transamin... 43 0.001 sp|Q02JF1|PHNW_PSEAB 2-aminoethylphosphonate--pyruvate transamin... 43 0.002 sp|A1SY89|PHNW_PSYIN 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|B1HPR6|PHNW_LYSSC 2-aminoethylphosphonate--pyruvate transamin... 41 0.004 sp|Q9ZLA7|Y736_HELPJ Uncharacterized aminotransferase jhp_0673 O... 39 0.022
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 270 bits (689), Expect = 6e-72 Identities = 124/179 (69%), Positives = 151/179 (84%) Frame = +3
Query: 93 MEYFPGPGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGA 272 M+Y GPGR+ LFVPGPVN+PE V+RAMNRNNEDYRSPA+P L+K+ LEDVK+IFKTT Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 273 TSFIIPTTGTGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAG 452 T F+ PTTGTGAWESALTNTLSP D+I++F +GQFSLLW+DQ +RLNF+VDVV+ +WG G Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 453 IDLGVLRDKLIADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 +L VL KL D +H IKA+C+VHNETATGVTND++ +R +LD +HPAL LVDGVSS Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSS 179
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 191 bits (484), Expect = 3e-48 Identities = 90/169 (53%), Positives = 117/169 (69%) Frame = +3
Query: 111 PGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIP 290 PGRN LFVPGP N+P++V+RAM +ED+RS P+L+K ED K++F +T T F+ P Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 291 TTGTGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVL 470 +GTG WESAL+NTL+ DK+L R GQFS LW+D QRL DV V + EWG G + Sbjct: 62 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 121
Query: 471 RDKLIADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVD 617 + L AD +H+IKAV VVHNETATGVT+++ +R +D HPAL VD Sbjct: 122 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVD 170
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 189 bits (480), Expect = 1e-47 Identities = 91/168 (54%), Positives = 114/168 (67%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 LF+PGP N+P+ V AMN ED RSP P + ED+K+ FK FI P++GTG Sbjct: 7 LFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTG 66
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 AWESA+ NTL+ DK+L R GQFSLLWVD +RL V+V D EWG G+ + D L Sbjct: 67 AWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADILA 126
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 D +H+IKAV V HNETATGV++D+AG+R LD +HPAL +VDGVSS Sbjct: 127 KDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSS 174
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 102 bits (253), Expect = 2e-21 Identities = 58/168 (34%), Positives = 92/168 (54%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 L +PGP VPE L A+ ++ +R+ + +++K + +T ++ +GTG Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDV-LMLNVSGTG 65
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 A E+ + N LSP D+IL G+F WV+ Q +V+ + EWG +D KL Sbjct: 66 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 AD++ +IKAV + H+ET+TGV NDL I + + AL +VD V+S Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKE-HGQALIIVDAVTS 172
>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1 Length = 385
Score = 90.1 bits (222), Expect = 8e-18 Identities = 58/168 (34%), Positives = 91/168 (54%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 L +PGP VP +VL AM +R+ L + +E +K++F T T F+I +GT Sbjct: 10 LMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVFITENDT-FLITGSGTA 68
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 A + A++N + DK+L G F + + ++ + +DVEWG + +++ I Sbjct: 69 AMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPEAVKE--I 126
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 D + IKAV VVHNET+TG N + I V+ + AL++VD VSS Sbjct: 127 LDKYDDIKAVTVVHNETSTGARNPIKEIGEVVK--DYDALYIVDTVSS 172
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 80.1 bits (196), Expect = 9e-15 Identities = 52/170 (30%), Positives = 83/170 (48%), Gaps = 2/170 (1%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 L +PGP VPE VL ++ ++ +RS + + +K + +T I+ +GTG Sbjct: 7 LMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEV-LILAASGTG 65
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 A E+ + N LS D+++ G+F W + + + WG ++ K + Sbjct: 66 AMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDF--KAV 123
Query: 486 ADSHHQ--IKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 D H Q KAV V H+ET+TGV NDL I + + AL +VD V+S Sbjct: 124 LDGHRQKPSKAVIVTHSETSTGVINDLEAINRHV-KAHGQALIIVDAVTS 172
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 70.9 bits (172), Expect = 5e-12 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 1/169 (0%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 + PGPV V +VLR M+ PA + +E ++ +F+T ++ I T Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 E+ L + + P D +L G+F L + +R +V +++ EWG D D + Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFD---PEDIIR 130
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCR-HPALFLVDGVSS 629 + K V +VH ET+TG + L I + CR ALF+VD V++ Sbjct: 131 EIKKVKPKIVAMVHGETSTGRIHPLKAIG---EACRTEDALFIVDAVAT 176
>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 Length = 392
Score = 59.3 bits (142), Expect = 2e-08 Identities = 48/171 (28%), Positives = 78/171 (45%), Gaps = 1/171 (0%) Frame = +3
Query: 120 NQLFV-PGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTT 296 NQL + PGP N+P +++ A S M + E ++ +F+T + +I + Sbjct: 22 NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS 81
Query: 297 GTGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRD 476 G A E+AL N L P D L G + VD +R+ V + + G L + + Sbjct: 82 GHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEE 141
Query: 477 KLIADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 L + H+ + + H E++TGV L G + R+ L LVD V+S Sbjct: 142 GL---AQHKPVLLFLTHGESSTGVLQPLDGFGELCH--RYKCLLLVDSVAS 187
>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 Length = 407
Score = 57.0 bits (136), Expect = 8e-08 Identities = 41/168 (24%), Positives = 77/168 (45%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 L PGP N+ +V + + + Y + + +E ++ +F+T + I GT Sbjct: 21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 A E+ ++N + P DK++ G FS R ++ VD +WG L + L+ Sbjct: 81 AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESALV 140
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 H+ + +V ET+TGV + G+ + ++ L +VD V++ Sbjct: 141 ---QHKPSLLTLVFGETSTGVKQQMEGVGELCK--KYNCLLMVDCVAA 183
>sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochondrial OS=Mus musculus GN=Agxt PE=2 SV=2 Length = 413
Score = 56.2 bits (134), Expect = 1e-07 Identities = 44/168 (26%), Positives = 77/168 (45%) Frame = +3
Query: 126 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSFLEDVKRIFKTTGATSFIIPTTGTG 305 L PGP N+ +VL A + + M + + + ++ +F+T + ++ +G Sbjct: 47 LLGPGPSNLAPRVLAAGSLRMIGHMQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHC 106
Query: 306 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGIDLGVLRDKLI 485 A E+AL N L P D LT G + + + R+ V + + G L + + L Sbjct: 107 AMETALFNLLEPGDSFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGL- 165
Query: 486 ADSHHQIKAVCVVHNETATGVTNDLAGIRNVLDRCRHPALFLVDGVSS 629 + H+ + +VH E++TGV L G + R+ L LVD V+S Sbjct: 166 --AQHKPVLLFLVHGESSTGVVQPLDGFGELCH--RYQCLLLVDSVAS 209
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TY57 |
Definition |
tr|A9TY57|A9TY57_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
179 |
Score (bit) |
290.0 |
E-value |
5.0e-77 |
Report |
|