DK961953 |
Clone id |
TST39A01NGRL0011_I23 |
Library |
TST39 |
Length |
413 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_I23. 5' end sequence. |
Accession |
DK961953 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL241Contig1 |
Sequence |
TGCAAAATGACTTGCGCCTCAAGGCATCCTACCTTCGCTTCGACATCAACACTGTGATTG CCTCGAAAAGCAAGGCGGAGAAGAAGGCTTTGAAGCCCCTTGTGGACAAGCTCTTCGATG AGATTAACAATCTTGATTACGCAGCCAGAAGTAAGAGTGTCCCCAATGCAAACAAGTACT ACTCGACGACTGTATCATCGTTGAATGACGTGCTGGCAAAACTTGGTTGAGTGCTGGCCT CAAGAATCTGCCACCATGATGCTATTGTAATTGTGCGATTATGCTTTCCTAAGGAGCTCA TACTTCTGTTCTTTGAAAAGTGCGGCACATATAATCTTAACGCAATCCCGGGTCCTCGTG AGATTGTTCTTCTTTTTGTTCACCCCCAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q41932 |
Definition |
sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana |
Align length |
75 |
Score (bit) |
93.2 |
E-value |
4.0e-19 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961953|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_I23, 5' (387 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chlo... 93 4e-19 sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chlo... 86 4e-17 sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chlorop... 80 3e-15 sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chlorop... 79 9e-15 sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chlo... 77 3e-14 sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chlo... 77 4e-14 sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chlorop... 71 2e-12 sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chlorop... 71 2e-12 sp|Q65QD4|ILVD_MANSM Dihydroxy-acid dehydratase OS=Mannheimia su... 37 0.031 sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chlorop... 35 0.12 sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chlorop... 32 1.00 sp|Q2IIW6|LIPA_ANADE Lipoyl synthase OS=Anaeromyxobacter dehalog... 31 2.2 sp|P53156|YGI1_YEAST Uncharacterized protein YGL081W OS=Saccharo... 31 2.2 sp|Q8RLE0|KITH_MYCGA Thymidine kinase OS=Mycoplasma gallisepticu... 31 2.2 sp|Q9CA30|LBD42_ARATH LOB domain-containing protein 42 OS=Arabid... 29 6.4 sp|Q6S6U7|HELI_EHV1V Probable ATP-dependent helicase 57 OS=Equin... 29 6.5 sp|P28934|HELI_EHV1B Probable ATP-dependent helicase 57 OS=Equin... 29 6.5 sp|A8XGY6|GLOB9_CAEBR Globin-like protein 9 OS=Caenorhabditis br... 29 6.5
>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis thaliana GN=PSBQ2 PE=1 SV=2 Length = 230
Score = 93.2 bits (230), Expect = 4e-19 Identities = 49/75 (65%), Positives = 55/75 (73%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 QNDLRL+ASYLR+D+NTVI L KLF I+NLDYAARSKS P+A KYY Sbjct: 156 QNDLRLRASYLRYDLNTVISAKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYY 215
Query: 183 STTVSSLNDVLAKLG 227 S TVSSLN+VLAKLG Sbjct: 216 SETVSSLNNVLAKLG 230
>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis thaliana GN=PSBQ1 PE=1 SV=3 Length = 224
Score = 86.3 bits (212), Expect = 4e-17 Identities = 44/75 (58%), Positives = 52/75 (69%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 QNDLR KASYLR+D+NT+I L KLFD I+NLDYAA+ KS A KYY Sbjct: 150 QNDLRSKASYLRYDLNTIISSKPKDEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYY 209
Query: 183 STTVSSLNDVLAKLG 227 + TVS+LN+VLAKLG Sbjct: 210 AETVSALNEVLAKLG 224
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia oleracea GN=PSBQ PE=1 SV=1 Length = 232
Score = 80.1 bits (196), Expect = 3e-15 Identities = 41/75 (54%), Positives = 50/75 (66%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 QNDLRL+ASYLR+D+ TVI L KLF I+NLD+AA+ KS A KYY Sbjct: 158 QNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYY 217
Query: 183 STTVSSLNDVLAKLG 227 TVS++N+VLAKLG Sbjct: 218 GQTVSNINEVLAKLG 232
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis viciifolia GN=PSBQ PE=2 SV=1 Length = 231
Score = 78.6 bits (192), Expect = 9e-15 Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 1/75 (1%) Frame = +3
Query: 6 NDLRLKASYLRFDINTVIXXXXXXXXXXXXPL-VDKLFDEINNLDYAARSKSVPNANKYY 182 NDLRL+ASYLR+D+NTVI KLF +I+NLDYAA+ KS P A KYY Sbjct: 157 NDLRLRASYLRYDLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYY 216
Query: 183 STTVSSLNDVLAKLG 227 + VS+LNDVL+K+G Sbjct: 217 ADAVSTLNDVLSKIG 231
>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays GN=PSBQ2 PE=3 SV=1 Length = 213
Score = 77.0 bits (188), Expect = 3e-14 Identities = 39/75 (52%), Positives = 49/75 (65%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 QNDLRL+ASYLR+D+ TVI L KLF I++LD+AA+ KS P A KY+ Sbjct: 139 QNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYF 198
Query: 183 STTVSSLNDVLAKLG 227 + T +L DVLAKLG Sbjct: 199 AATKDALGDVLAKLG 213
>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays GN=PSBQ1 PE=2 SV=1 Length = 217
Score = 76.6 bits (187), Expect = 4e-14 Identities = 39/75 (52%), Positives = 49/75 (65%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 QNDLRL+ASYLR+D+ TVI L KLF I++LD+AA+ KS P A KY+ Sbjct: 143 QNDLRLRASYLRYDLKTVIASKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYF 202
Query: 183 STTVSSLNDVLAKLG 227 + T +L DVLAKLG Sbjct: 203 AATKDALGDVLAKLG 217
>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0544800 PE=2 SV=1 Length = 217
Score = 70.9 bits (172), Expect = 2e-12 Identities = 38/75 (50%), Positives = 48/75 (64%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 ++DLRL+ASYLR+D+ TVI L KLF I+ LD+AA+ KS A KYY Sbjct: 143 RDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYY 202
Query: 183 STTVSSLNDVLAKLG 227 + T S+L DVLAKLG Sbjct: 203 TLTKSALGDVLAKLG 217
>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_025465 PE=1 SV=2 Length = 217
Score = 70.9 bits (172), Expect = 2e-12 Identities = 38/75 (50%), Positives = 48/75 (64%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 ++DLRL+ASYLR+D+ TVI L KLF I+ LD+AA+ KS A KYY Sbjct: 143 RDDLRLRASYLRYDLKTVINSKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYY 202
Query: 183 STTVSSLNDVLAKLG 227 + T S+L DVLAKLG Sbjct: 203 TLTKSALGDVLAKLG 217
>sp|Q65QD4|ILVD_MANSM Dihydroxy-acid dehydratase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=ilvD PE=3 SV=1 Length = 615
Score = 37.0 bits (84), Expect = 0.031 Identities = 18/50 (36%), Positives = 27/50 (54%) Frame = +3
Query: 150 SKSVPNANKYYSTTVSSLNDVLAKLG*VLASRICHHDAIVIVRLCFPKEL 299 SK PN NKY+ V V+A LG + + + HHD ++ L F ++L Sbjct: 316 SKVAPNTNKYHMEDVHRAGGVMAILGELDRANLLHHDTKTVLGLTFAEQL 365
>sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBQ PE=2 SV=1 Length = 199
Score = 35.0 bits (79), Expect = 0.12 Identities = 21/72 (29%), Positives = 32/72 (44%) Frame = +3
Query: 3 QNDLRLKASYLRFDINTVIXXXXXXXXXXXXPLVDKLFDEINNLDYAARSKSVPNANKYY 182 + LR + LRFD+NT+ L + + +LD+A R K +A K Sbjct: 125 REQLRRQVGTLRFDLNTLASTKEKEAKKAALGLRKEFIQAVEDLDFALREKDQASAAKKL 184
Query: 183 STTVSSLNDVLA 218 T + L+ VLA Sbjct: 185 EITKAKLDSVLA 196
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A8CF48 |
Definition |
tr|A8CF48|A8CF48_BRACM Oxygen-evolving enhancer protein 3-2 OS=Brassica campestris |
Align length |
75 |
Score (bit) |
96.3 |
E-value |
7.0e-19 |
Report |
|