DK961964 |
Clone id |
TST39A01NGRL0011_J10 |
Library |
TST39 |
Length |
675 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_J10. 5' end sequence. |
Accession |
DK961964 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL6Contig1 |
Sequence |
AGCAGGTGACGGTAGGAGCAAGGAGGATCAAGAAGAAGAAAGAGAAGAAGAAGCCATGGC TGCCGTCTCTGCTTCTACTCTCTCCGCCTCGGTGGCGGCAACTGCCCCCGCTGCTTCTCT GAAGTCGGAATTCTCTGGCGTTCAGGTGCAGGGCATCCCCTCCCTCTCTCCTAAGCTATC CGCCCGCTCCCTCAGAATCGAGGCAAGTGGTGTCAAGAAGATCTCGACCAAAACTCCCTT GGGACCTTCCGGCGATACCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAA GGGAAAGGGAGTCTACCAATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCC TATCTATGTCCCAGAGGAATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGG ATTGGCTATCTGGGCAGTTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTA CAACACCAGTGCCCTTGCTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATT CTGACACACTATGCGTCTTCCATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGA GAATGAAAAAGTGTAGCTCCTTGTGAATTGCAATTTAGTTATTTGCATGTTAAAAAAAAG AAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40163 |
Definition |
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum |
Align length |
121 |
Score (bit) |
137.0 |
E-value |
5.0e-32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK961964|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_J10, 5' (651 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 137 5e-32 sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 136 1e-31 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 135 2e-31 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 133 9e-31 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 132 1e-30 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 129 2e-29 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 127 5e-29 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 31 4.9 sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (i... 31 4.9
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 137 bits (345), Expect = 5e-32 Identities = 70/121 (57%), Positives = 82/121 (67%) Frame = +2
Query: 140 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 319 + V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQ Sbjct: 20 ISVKGLPSLTR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQ 77
Query: 320 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 499 Y KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 78 YVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
Query: 500 Q 502 Q Sbjct: 138 Q 138
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 136 bits (342), Expect = 1e-31 Identities = 70/119 (58%), Positives = 81/119 (68%) Frame = +2
Query: 146 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 325 V+G+PSL+ S+ S ++ ASGVKK+ T P G +G + +DASGRK KGKGVYQY Sbjct: 22 VKGLPSLAR--SSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79
Query: 326 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 502 KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALAQ 138
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 135 bits (339), Expect = 2e-31 Identities = 68/119 (57%), Positives = 82/119 (68%) Frame = +2
Query: 146 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 325 V+G+PSL+ S+ S R++ASGVKK+ T P G +G + +DASGRK KGKGVYQ+ Sbjct: 20 VKGLPSLAR--SSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFV 77
Query: 326 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 502 KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT V+NTSALAQ Sbjct: 78 DKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALAQ 136
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 133 bits (334), Expect = 9e-31 Identities = 69/121 (57%), Positives = 80/121 (66%) Frame = +2
Query: 140 VQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQ 319 + +G+PSL+ + S S RI ASGVKKI T P G +G + +DASGRK KG GVY+ Sbjct: 22 MSARGLPSLT-RASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYK 80
Query: 320 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALA 499 + KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT VYNTSALA Sbjct: 81 FVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
Query: 500 Q 502 Q Sbjct: 141 Q 141
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 132 bits (333), Expect = 1e-30 Identities = 69/119 (57%), Positives = 79/119 (66%) Frame = +2
Query: 146 VQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYT 325 V+G+PSLS S+ S + ASGVKKI PLG G K + +D+SGRK GKGVYQ+ Sbjct: 24 VKGLPSLSR--SSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFV 81
Query: 326 KKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 502 KYGANVDGYSPIY EEW+ +GD YA G TGL IWAVT VYNTSALAQ Sbjct: 82 DKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 129 bits (323), Expect = 2e-29 Identities = 68/118 (57%), Positives = 77/118 (65%) Frame = +2
Query: 149 QGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAKGKGVYQYTK 328 +G+PSL+ + S +I ASGVKKI T P G +G + +DASGRK KG GVY+Y Sbjct: 25 RGLPSLTR--ARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82
Query: 329 KYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVYNTSALAQ 502 KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT VYNTSALAQ Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALAQ 140
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 127 bits (319), Expect = 5e-29 Identities = 69/126 (54%), Positives = 77/126 (61%) Frame = +2
Query: 122 KSEFSGVQVQGIPSLSPKLSARSLRIEASGVKKISTKTPLGPSGDTKFKGNLDASGRKAK 301 +S+ GV+ PS P SL I A KK+ T P GP G FK +DASGR AK Sbjct: 21 RSKLGGVR----PSARP-----SLVIVAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAK 71
Query: 302 GKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTXXXXXXXXXXXVY 481 GKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT VY Sbjct: 72 GKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVY 131
Query: 482 NTSALA 499 +TSALA Sbjct: 132 STSALA 137
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 31.2 bits (69), Expect = 4.9 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2
Query: 626 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 537 SQG+ L+HS D I N+ D +DA VR+ Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|B2MW49|L_LATVB RNA-directed RNA polymerase OS=Latino virus (isolate Rat/Bolivia/MARU 1924/1965) GN=L PE=3 SV=1 Length = 2238
Score = 31.2 bits (69), Expect = 4.9 Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 6/87 (6%) Frame = +2
Query: 140 VQVQGIPSLSPKLSARSLRIEASGVKKIST----KTPLGPSGDTKFKGNLDASGRKA--K 301 ++ + IPSL + ++ + G KKI K+ S + F G + G K Sbjct: 1591 IETEEIPSLIKSIQSKLSKNFVKGAKKILAESINKSAFQSSIASGFIGFCQSVGSKCVRT 1650
Query: 302 GKGVYQYTKKYGANVDGYSPIYVPEEW 382 G+G + Y K+ + VD Y P V W Sbjct: 1651 GEGGFYYIKELKSKVDLYCPCEVCARW 1677
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NK29 |
Definition |
tr|A9NK29|A9NK29_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
129 |
Score (bit) |
144.0 |
E-value |
6.0e-33 |
Report |
|