DK962011 |
Clone id |
TST39A01NGRL0011_L10 |
Library |
TST39 |
Length |
646 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_L10. 5' end sequence. |
Accession |
DK962011 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL94Contig1 |
Sequence |
TGGGTATTGAGGATTCCACATCCCACTATCCCGCTTCGTCTTCCTCCTTTCTCGCTCTCT GAGCTTTTCGGCTATGGCGTCTTGTAGCTTCAGTCACTGCTCTATTTCTACCCTTGAAAA TCAGCGTGTGCTTGCAAAGACCCCCTCTTCATCCGTATCTGCTGCTCCCACTTCGACTCG TGGATTAAGTTCTTCTGCCTCTTTCGCGCAGCTAAGCTTTCAGGAAGGAGTCTGCCTTCG AGGTGTTGCTTCTCGCAGAAGTGTGCACCTTCTTGTTCGTGCTGCTCGTGAGAAGTTTGA GCGCAATAAGCCGCATGTGAACATTGGCACTATTGGCCATGTCGACCACGGGAAAACGAC TCTCACTGCTGCCCTCACAATGGCTGCAGCGTCTGAGCTAGGGAGTGCTCCTAAAAGATA TGATCAGATTGATGCTGCCCCAGAGGAAAGAGCAAGAGGTATTACCATCAACACCGCAGT GGTCGAATATGAGTCTCCCAACAGACACTATGCACACGTGGACTGCCCTGGACATGCTGA CTATGTGAAGAACATGATAACTGGTGCAGCGCAAATGGATGGTGCCATCCTTGTCGTCTC TGGAGCAGATGGTGCCATGCCTCAAACGAAAGAGCACATTCTTTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P68158 |
Definition |
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum |
Align length |
132 |
Score (bit) |
202.0 |
E-value |
2.0e-51 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962011|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_L10, 5' (646 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nico... 202 2e-51 sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Ni... 202 2e-51 sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Ni... 202 2e-51 sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 201 2e-51 sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Gly... 199 8e-51 sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arab... 197 3e-50 sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum ... 196 9e-50 sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlo... 194 4e-49 sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scen... 192 2e-48 sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostr... 191 3e-48 sp|Q9MUP0|EFTU_MESVI Elongation factor Tu, chloroplastic OS=Meso... 191 4e-48 sp|Q1LI13|EFTU_RALME Elongation factor Tu OS=Ralstonia metallidu... 189 8e-48 sp|Q46WC7|EFTU_RALEJ Elongation factor Tu OS=Ralstonia eutropha ... 189 8e-48 sp|Q0K5Z9|EFTU_RALEH Elongation factor Tu OS=Ralstonia eutropha ... 189 8e-48 sp|P42481|EFTU_THICU Elongation factor Tu OS=Thiobacillus cuprin... 189 1e-47 sp|Q8XGZ0|EFTU_RALSO Elongation factor Tu OS=Ralstonia solanacea... 188 2e-47 sp|Q47JA5|EFTU_DECAR Elongation factor Tu OS=Dechloromonas aroma... 187 4e-47 sp|A4JAM5|EFTU_BURVG Elongation factor Tu OS=Burkholderia vietna... 187 4e-47 sp|Q2SU25|EFTU_BURTA Elongation factor Tu OS=Burkholderia thaila... 187 4e-47 sp|Q63PZ6|EFTU_BURPS Elongation factor Tu OS=Burkholderia pseudo... 187 4e-47 sp|A3NEI1|EFTU_BURP6 Elongation factor Tu OS=Burkholderia pseudo... 187 4e-47 sp|Q3JMP6|EFTU_BURP1 Elongation factor Tu OS=Burkholderia pseudo... 187 4e-47 sp|A3P0B5|EFTU_BURP0 Elongation factor Tu OS=Burkholderia pseudo... 187 4e-47 sp|A1V8A5|EFTU_BURMS Elongation factor Tu OS=Burkholderia mallei... 187 4e-47 sp|Q62GK3|EFTU_BURMA Elongation factor Tu OS=Burkholderia mallei... 187 4e-47 sp|A2S7F9|EFTU_BURM9 Elongation factor Tu OS=Burkholderia mallei... 187 4e-47 sp|A3MRT8|EFTU_BURM7 Elongation factor Tu OS=Burkholderia mallei... 187 4e-47 sp|Q06J54|EFTU_BIGNA Elongation factor Tu, chloroplastic OS=Bige... 187 4e-47 sp|Q3SLQ1|EFTU_THIDA Elongation factor Tu OS=Thiobacillus denitr... 187 5e-47 sp|Q20EU5|EFTU_OLTVI Elongation factor Tu, chloroplastic OS=Oltm... 187 5e-47
>sp|P68158|EFTU_TOBAC Elongation factor Tu, chloroplastic OS=Nicotiana tabacum GN=TUFA PE=3 SV=1 Length = 478
Score = 202 bits (513), Expect = 2e-51 Identities = 101/132 (76%), Positives = 105/132 (79%) Frame = +2
Query: 248 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 427 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 428 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 607 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 608 DGAMPQTKEHIL 643 DG MPQTKEHIL Sbjct: 179 DGPMPQTKEHIL 190
>sp|Q43364|EFTUB_NICSY Elongation factor TuB, chloroplastic OS=Nicotiana sylvestris GN=TUFB PE=2 SV=1 Length = 485
Score = 202 bits (513), Expect = 2e-51 Identities = 100/123 (81%), Positives = 103/123 (83%) Frame = +2
Query: 275 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 454 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 75 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERA 134
Query: 455 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 634 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 135 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 194
Query: 635 HIL 643 HIL Sbjct: 195 HIL 197
>sp|Q40450|EFTUA_NICSY Elongation factor TuA, chloroplastic OS=Nicotiana sylvestris GN=TUFA PE=2 SV=2 Length = 478
Score = 202 bits (513), Expect = 2e-51 Identities = 101/132 (76%), Positives = 105/132 (79%) Frame = +2
Query: 248 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 427 A+ R VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+ Sbjct: 59 ATHRHRRFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASMGNSAPKKYDE 118
Query: 428 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 607 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILV SGA Sbjct: 119 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSGA 178
Query: 608 DGAMPQTKEHIL 643 DG MPQTKEHIL Sbjct: 179 DGPMPQTKEHIL 190
>sp|P46280|EFTU2_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1 Length = 479
Score = 201 bits (512), Expect = 2e-51 Identities = 100/123 (81%), Positives = 103/123 (83%) Frame = +2
Query: 275 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 454 VRAAR KFER KPHVNIGTIGHVDHGK S SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERA 128
Query: 455 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 634 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 635 HIL 643 HIL Sbjct: 189 HIL 191
>sp|Q43467|EFTU1_SOYBN Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFA PE=3 SV=1 Length = 479
Score = 199 bits (507), Expect = 8e-51 Identities = 98/123 (79%), Positives = 103/123 (83%) Frame = +2
Query: 275 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 454 VRAAR KFER KPHVNIGTIGHVDHGK + SAPK+YD+IDAAPEERA Sbjct: 69 VRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERA 128
Query: 455 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 634 RGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 129 RGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 188
Query: 635 HIL 643 HI+ Sbjct: 189 HII 191
>sp|P17745|EFTU_ARATH Elongation factor Tu, chloroplastic OS=Arabidopsis thaliana GN=TUFA PE=1 SV=1 Length = 476
Score = 197 bits (502), Expect = 3e-50 Identities = 101/132 (76%), Positives = 106/132 (80%) Frame = +2
Query: 248 ASRRSVHLLVRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQ 427 ++RRS VRAAR KFER KPHVNIGTIGHVDHGK S S K+YD+ Sbjct: 59 STRRS--FTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
Query: 428 IDAAPEERARGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 607 IDAAPEERARGITINTA VEYE+ NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 608 DGAMPQTKEHIL 643 DG MPQTKEHIL Sbjct: 177 DGPMPQTKEHIL 188
>sp|O24310|EFTU_PEA Elongation factor Tu, chloroplastic OS=Pisum sativum GN=tufA PE=2 SV=1 Length = 488
Score = 196 bits (498), Expect = 9e-50 Identities = 97/123 (78%), Positives = 101/123 (82%) Frame = +2
Query: 275 VRAAREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERA 454 VRAAR KFER KPH+NIGTIGHVDHGK SAPK+YD+IDAAPEERA Sbjct: 78 VRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALACLGNSAPKKYDEIDAAPEERA 137
Query: 455 RGITINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKE 634 RGITINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKE Sbjct: 138 RGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKE 197
Query: 635 HIL 643 HIL Sbjct: 198 HIL 200
>sp|A2CI56|EFTU_CHLAT Elongation factor Tu, chloroplastic OS=Chlorokybus atmophyticus GN=tufA PE=3 SV=1 Length = 410
Score = 194 bits (492), Expect = 4e-49 Identities = 95/120 (79%), Positives = 99/120 (82%) Frame = +2
Query: 284 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 463 AREKFER KPHVNIGTIGHVDHGK + G+ KRYD+IDAAPEERARGI Sbjct: 2 AREKFERKKPHVNIGTIGHVDHGKTTLTAAITMALAASTGAKGKRYDEIDAAPEERARGI 61
Query: 464 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 643 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
>sp|Q1KVS9|EFTU_SCEOB Elongation factor Tu, chloroplastic OS=Scenedesmus obliquus GN=tufA PE=3 SV=1 Length = 419
Score = 192 bits (487), Expect = 2e-48 Identities = 93/120 (77%), Positives = 101/120 (84%) Frame = +2
Query: 284 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 463 AR KFER+KPHVNIGTIGHVDHGK + G+ K+YD+ID+APEE+ARGI Sbjct: 2 ARAKFERSKPHVNIGTIGHVDHGKTTLTAAITMALAALGGATGKKYDEIDSAPEEKARGI 61
Query: 464 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 643 TINTA VEYE+PNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
>sp|Q0P3M7|EFTU_OSTTA Elongation factor Tu, chloroplastic OS=Ostreococcus tauri GN=tufA PE=3 SV=1 Length = 409
Score = 191 bits (485), Expect = 3e-48 Identities = 93/120 (77%), Positives = 100/120 (83%) Frame = +2
Query: 284 AREKFERNKPHVNIGTIGHVDHGKXXXXXXXXXXXXSELGSAPKRYDQIDAAPEERARGI 463 AREKFER KPHVNIGTIGHVDHGK + GSA K+YD+ID++PEE+ARGI Sbjct: 2 AREKFERTKPHVNIGTIGHVDHGKTTLTAAITMAMAARGGSAGKKYDEIDSSPEEKARGI 61
Query: 464 TINTAVVEYESPNRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGAMPQTKEHIL 643 TINTA VEYE+ RHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG MPQTKEHIL Sbjct: 62 TINTAHVEYETATRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIL 121
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6TFK5 |
Definition |
tr|B6TFK5|B6TFK5_MAIZE Elongation factor Tu OS=Zea mays |
Align length |
132 |
Score (bit) |
206.0 |
E-value |
8.0e-52 |
Report |
|