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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962069
Clone id TST39A01NGRL0011_N22
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_N22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTTGGACCTACCTCATCTTGGCGTTTGTGGGTGCCCAAGATTGACGCAGACTGCTACCAC
CCACAATCTCTCTCTGCCTCTTTGTGCTTTTGCGTGAGCAGGAATCTCTCAGAATCGCGA
GAAGGTTAGAAGCTCAGATGAATGAGTCTTTTCAAAAGGTAGCGGACATGGAAAAACAGA
GTCCTGTAATTCCTTTGGGTCTTGATTATGGGGGCAAAGGTAATGATGGTAGTTTCTTGA
GAGTGAAGTTGTGCAGGTAGGTCGAAGCTGCGCAAGCAATATCATATAGTGGTCTGAAAA
TTATAAGTTGAGGGCATTTGAGAAAAGAGCATGTTGAGCAAGGCGGATCATGATGATGCA
TGGCCAGTTAGTGTCTCCAACAAAAAAAAGGAAGTGGAAAGCAGGGCTAACTGCCTTACT
CCTTCCAATTCTGCTTTGACTGAACACGATTACTTAGGGCTATCAAAGACATCCGACTCG
TCCCCGGTACAAAACACTCAATTAGCCTATTCTACAGCATGTGATGAGTGTGATGCAGAG
GACAAGGGACTGGAATGCGGAGATACAGAGCTAAGGCTGGGCATAGGGCCGTTAGGTAAC
GAGGATGCAAGTTCAGCATCACAACCTGCCCATGC
■■Homology search results ■■ -
sp_hit_id Q9V3Q6
Definition sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase 7 OS=Drosophila melanogaster
Align length 56
Score (bit) 32.0
E-value 2.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_N22, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kin...    32   2.7  
sp|Q6BQ02|DRE2_DEBHA Protein DRE2 OS=Debaryomyces hansenii GN=DR...    31   4.7  
sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF O...    31   6.1  
sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor ...    31   6.1  
sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type recepto...    31   6.1  
sp|Q01020|VTER_SHV21 Probable DNA packaging protein OS=Saimiriin...    30   8.0  
sp|O14234|CCH1_SCHPO Calcium-channel protein cch1 OS=Schizosacch...    30   8.0  

>sp|Q9V3Q6|M3K7_DROME Mitogen-activated protein kinase kinase kinase
           7 OS=Drosophila melanogaster GN=Tak1 PE=2 SV=1
          Length = 678

 Score = 32.0 bits (71), Expect = 2.7
 Identities = 19/56 (33%), Positives = 33/56 (58%)
 Frame = +1

Query: 358 AWPVSVSNKKKEVESRANCLTPSNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACD 525
           A P S+S+++ E+   +  LTP+ +A    + + +SKT+ SS  +NT    ST+ D
Sbjct: 301 AQPDSLSSQEGELSPSSTQLTPTTAANANVNAIAISKTTTSSMTENTS---STSSD 353


>sp|Q6BQ02|DRE2_DEBHA Protein DRE2 OS=Debaryomyces hansenii GN=DRE2
           PE=3 SV=2
          Length = 339

 Score = 31.2 bits (69), Expect = 4.7
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 15/75 (20%)
 Frame = +1

Query: 367 VSVSNKKKEVE---SRANCLTPSNSALTEHDYLGLSKTSDSSP------------VQNTQ 501
           VS+  KKKEV    +   CL       + H  +GL+ TS S+             +Q T+
Sbjct: 125 VSIPLKKKEVAVGGASKQCLPSFKKLSSTHAAVGLTDTSASNTDEENDDVNSKRKLQETK 184

Query: 502 LAYSTACDECDAEDK 546
           LAY +  D+ D ED+
Sbjct: 185 LAYFSESDDEDEEDQ 199


>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
            OS=Arabidopsis thaliana GN=CEF PE=1 SV=2
          Length = 1097

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = -3

Query: 231  YHHYLCPHNQDPKELQDSVFPCPLPFEKTHSSE 133
            Y   +  H+ D  + +++V PCP+P +  H S+
Sbjct: 949  YPRMIAVHDLDANDNEENVVPCPIPLQSEHLSD 981


>sp|O88278|CELR3_RAT Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Rattus norvegicus GN=Celsr3 PE=2 SV=1
          Length = 3313

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 493  NTQLAYSTACDECDAEDKGLECGDTELRLGIGPLGNEDASSASQP 627
            N  L+Y  A  EC+A    L+   +E RLG+    N+DA++ +QP
Sbjct: 2945 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQP 2987


>sp|Q91ZI0|CELR3_MOUSE Cadherin EGF LAG seven-pass G-type receptor 3
            OS=Mus musculus GN=Celsr3 PE=2 SV=1
          Length = 3301

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 493  NTQLAYSTACDECDAEDKGLECGDTELRLGIGPLGNEDASSASQP 627
            N  L+Y  A  EC+A    L+   +E RLG+    N+DA++ +QP
Sbjct: 2937 NDLLSYWPALGECEAAPCALQAWGSERRLGLD--SNKDAANNNQP 2979


>sp|Q01020|VTER_SHV21 Probable DNA packaging protein OS=Saimiriine
           herpesvirus 2 (strain 11) GN=29 PE=3 SV=1
          Length = 683

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -3

Query: 384 FVGDTNWPCIIMIRLAQHA--LFSNALNL*FSDHYMILLAQLRPTCTTSLSRNYHHYLCP 211
           F+   + P I+   L + A  +F +++N    D     L  L+      L  N  +Y+CP
Sbjct: 320 FIKKDSLPAILGFMLQKDAKLIFISSVNS--GDRATSFLFNLKNASEKML--NIVNYICP 375

Query: 210 HNQDPKELQDSVFPCP 163
            ++D   LQDS+  CP
Sbjct: 376 DHKDDFSLQDSLISCP 391


>sp|O14234|CCH1_SCHPO Calcium-channel protein cch1
           OS=Schizosaccharomyces pombe GN=cch1 PE=2 SV=1
          Length = 1854

 Score = 30.4 bits (67), Expect = 8.0
 Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
 Frame = +1

Query: 349 HDDAWPVSVSNKKKEVESRANCLTPSNSALTEHDYLGLSKTSDSSP--VQNTQLAYSTAC 522
           HDD++  +V+  +  V    + ++ ++  +  H+ LG+++T D     +   QLAY T  
Sbjct: 46  HDDSYLDNVNPFEYNVADDEDTISMTSDGVEFHN-LGITETVDEQDKILSELQLAYPTVS 104

Query: 523 DECDAEDKGLECGD 564
              +  DKGL  GD
Sbjct: 105 RYSETLDKGLLNGD 118
tr_hit_id Q948Q1
Definition tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens
Align length 69
Score (bit) 35.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_N22, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens ...    35   2.9  
tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.9  
tr|B6NQ16|B6NQ16_BRAFL Putative uncharacterized protein (Fragmen...    34   8.4  

>tr|Q948Q1|Q948Q1_PHYPA IAA/AUX protein OS=Physcomitrella patens
           GN=PpIAA1b PE=2 SV=1
          Length = 503

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 424 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDTELRLG----IGP 591
           S S L EHDY GLS+ S S+     Q       ++C  E+  L    T L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 592 LGNEDASSA 618
            G+ D + A
Sbjct: 111 SGHADGADA 119


>tr|A9T8J7|A9T8J7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_219923 PE=4 SV=1
          Length = 503

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +1

Query: 424 SNSALTEHDYLGLSKTSDSSPVQNTQLAYSTACDECDAEDKGLECGDTELRLG----IGP 591
           S S L EHDY GLS+ S S+     Q       ++C  E+  L    T L+LG    + P
Sbjct: 57  SGSTLKEHDYFGLSEVSSSNSSSGKQ------PEKCCREELNLNESATTLQLGPPAAVKP 110

Query: 592 LGNEDASSA 618
            G+ D + A
Sbjct: 111 SGHADGADA 119


>tr|B6NQ16|B6NQ16_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_268227 PE=4 SV=1
          Length = 562

 Score = 33.9 bits (76), Expect = 8.4
 Identities = 32/114 (28%), Positives = 48/114 (42%)
 Frame = -3

Query: 501 LSVLYRGRVGCL**P*VIVFSQSRIGRSKAVSPAFHFLFFVGDTNWPCIIMIRLAQHALF 322
           LS+L+ G +GC   P   V + S IG+ +A+     FL FVG      I+ I   +H   
Sbjct: 86  LSLLFTG-LGCTVPPLGGVLADSLIGKYRAICVTA-FLHFVGKL----ILKILKTRHV-- 137

Query: 321 SNALNL*FSDHYMILLAQLRPTCTTSLSRNYHHYLCPHNQDPKELQDSVFPCPL 160
                       +  L+     C  +++  +  Y  P N   KE  DS+FP  L
Sbjct: 138 ---------PSRIFFLSSSGMACMVAVAFPFESYFGPENSPSKETLDSIFPAAL 182