DK962070 |
Clone id |
TST39A01NGRL0011_N23 |
Library |
TST39 |
Length |
427 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_N23. 5' end sequence. |
Accession |
DK962070 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL19Contig1 |
Sequence |
TTGGTGTTGAGCTTCTGTGAAGGCGTCTTTGCACACGCCTCCTGTTGGAGCTTAGCCGAA CTTCTCGTCCGTCGCTCTTTCGGCTCCAGCGAAAATGAGAGAGTGCATCTCCATCCACAT TGGCCAGGCTGGGATTCAGGTCGGCTATGCCTGCTGGGAGCTTTACTGTCTCGAACATGG TATCCGGCCATATGGTCAGATGCCAAGTGACACGACTGTTGGTGGAGGAGATGATGCATT TAACACTTTTTTTAGTGAGACAGGGGCTGGTAAGCATGTGCCTAGGCCCATCTTTGTGGA CCAGGACCCAACTGTGATTGATGAAGTGCGAACTGGCTGCTATAGGCAGCTTTTCTACCC AGAGAAACTCATAAGTGGCAAGGAGCATGCTGCCAACAACTTTGGCCGTGGCCATTATAC CATTGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6VAF9 |
Definition |
sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain OS=Gossypium hirsutum |
Align length |
111 |
Score (bit) |
210.0 |
E-value |
2.0e-54 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1PGA4 |
Definition |
tr|Q1PGA4|Q1PGA4_STRAF Alpha-tubulin (Fragment) OS=Striga asiatica |
Align length |
111 |
Score (bit) |
212.0 |
E-value |
7.0e-54 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962070|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_N23, 5' (412 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q1PGA4|Q1PGA4_STRAF Alpha-tubulin (Fragment) OS=Striga asiati... 212 7e-54 tr|Q9M3T2|Q9M3T2_BETVE Alpha-tubulin OS=Betula verrucosa GN=atub... 211 2e-53 tr|Q84XV0|Q84XV0_POPTM Alpha tubulin OS=Populus tremuloides PE=2... 211 2e-53 tr|Q84TK6|Q84TK6_POPTM Alpha-tubulin 1 OS=Populus tremuloides PE... 211 2e-53 tr|A9PHZ8|A9PHZ8_POPTR Putative uncharacterized protein OS=Popul... 211 2e-53 tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii G... 210 2e-53 tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 210 2e-53 tr|A9PL16|A9PL16_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 210 2e-53 tr|A5BZF5|A5BZF5_VITVI Putative uncharacterized protein (Chromos... 210 2e-53 tr|Q8H6L8|Q8H6L8_GOSHI Alpha-tubulin 4 (Fragment) OS=Gossypium h... 210 3e-53 tr|Q5ME66|Q5ME66_PSEMZ Alpha tubulin 1 OS=Pseudotsuga menziesii ... 210 3e-53 tr|Q3HRW7|Q3HRW7_SOLTU Alpha-tubulin-like protein OS=Solanum tub... 210 3e-53 tr|Q0WV25|Q0WV25_ARATH Tubulin alpha-2/alpha-4 chain OS=Arabidop... 210 3e-53 tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1 210 3e-53 tr|A9QVH4|A9QVH4_9CONI Alpha tubulin OS=Picea wilsonii GN=TUA1 P... 210 3e-53 tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 210 3e-53 tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Popul... 210 3e-53 tr|A8DSD0|A8DSD0_POPTM Alpha-tubulin 7 OS=Populus tremuloides PE... 210 3e-53 tr|A5HJR1|A5HJR1_THEHA TUA2 (TUA2-2) OS=Thellungiella halophila ... 210 3e-53 tr|Q9FVI3|Q9FVI3_ORYSA Alpha-tubulin OS=Oryza sativa GN=TubA1 PE... 209 4e-53 tr|Q75GI3|Q75GI3_ORYSJ Os03g0726100 protein OS=Oryza sativa subs... 209 4e-53 tr|Q10DN1|Q10DN1_ORYSJ Tubulin alpha-1 chain, putative, expresse... 209 4e-53 tr|A9PL15|A9PL15_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 209 4e-53 tr|A7QZH1|A7QZH1_VITVI Chromosome chr7 scaffold_275, whole genom... 209 4e-53 tr|A2XLK9|A2XLK9_ORYSI Putative uncharacterized protein OS=Oryza... 209 4e-53 tr|Q2TM96|Q2TM96_CYPBE Putative alpha-tubulin (Fragment) OS=Sola... 209 6e-53 tr|A7PMS7|A7PMS7_VITVI Chromosome chr14 scaffold_21, whole genom... 209 7e-53 tr|A4K4Y1|A4K4Y1_WHEAT Alpha tubulin-2A (Alpha tubulin-2D) (Alph... 209 7e-53 tr|Q8VXD1|Q8VXD1_TOBAC Alpha-tubulin OS=Nicotiana tabacum GN=tub... 208 9e-53 tr|Q8VXC9|Q8VXC9_TOBAC Alpha-tubulin OS=Nicotiana tabacum GN=tub... 208 9e-53
>tr|Q1PGA4|Q1PGA4_STRAF Alpha-tubulin (Fragment) OS=Striga asiatica PE=2 SV=1 Length = 206
Score = 212 bits (540), Expect = 7e-54 Identities = 99/111 (89%), Positives = 104/111 (93%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSDTTVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDTTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR +FVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|Q9M3T2|Q9M3T2_BETVE Alpha-tubulin OS=Betula verrucosa GN=atub PE=2 SV=1 Length = 451
Score = 211 bits (536), Expect = 2e-53 Identities = 98/111 (88%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIKPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR +FVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|Q84XV0|Q84XV0_POPTM Alpha tubulin OS=Populus tremuloides PE=2 SV=1 Length = 451
Score = 211 bits (536), Expect = 2e-53 Identities = 99/111 (89%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR IFVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|Q84TK6|Q84TK6_POPTM Alpha-tubulin 1 OS=Populus tremuloides PE=2 SV=1 Length = 451
Score = 211 bits (536), Expect = 2e-53 Identities = 99/111 (89%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR IFVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|A9PHZ8|A9PHZ8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 451
Score = 211 bits (536), Expect = 2e-53 Identities = 99/111 (89%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR IFVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii GN=TUA1 PE=2 SV=1 Length = 450
Score = 210 bits (535), Expect = 2e-53 Identities = 99/111 (89%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR IFVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA9 PE=2 SV=1 Length = 450
Score = 210 bits (535), Expect = 2e-53 Identities = 98/111 (88%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR +FVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|A9PL16|A9PL16_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TUA7 PE=2 SV=1 Length = 451
Score = 210 bits (535), Expect = 2e-53 Identities = 99/111 (89%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR IFVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAIFVDLEPTVIDEVRTGTYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|A5BZF5|A5BZF5_VITVI Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00015032001 PE=3 SV=1 Length = 451
Score = 210 bits (535), Expect = 2e-53 Identities = 98/111 (88%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECISIHIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR +FVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
>tr|Q8H6L8|Q8H6L8_GOSHI Alpha-tubulin 4 (Fragment) OS=Gossypium hirsutum GN=ATub4 PE=2 SV=1 Length = 311
Score = 210 bits (534), Expect = 3e-53 Identities = 97/111 (87%), Positives = 103/111 (92%) Frame = +2
Query: 80 MRECISIHIGQAGIQVGYACWELYCLEHGIRPYGQMPSDTTVGGGDDAFNTFFSETGAGK 259 MRECIS+HIGQAGIQVG ACWELYCLEHGI+P GQMPSD TVGGGDDAFNTFFSETGAGK Sbjct: 1 MRECISVHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGK 60
Query: 260 HVPRPIFVDQDPTVIDEVRTGCYRQLFYPEKLISGKEHAANNFGRGHYTIG 412 HVPR +FVD +PTVIDEVRTG YRQLF+PE+LISGKE AANNF RGHYTIG Sbjct: 61 HVPRAVFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAANNFARGHYTIG 111
|