DK962077 |
Clone id |
TST39A01NGRL0011_O08 |
Library |
TST39 |
Length |
673 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_O08. 5' end sequence. |
Accession |
DK962077 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL375Contig1 |
Sequence |
GTGCTATTAAAGTCATCACAGCTTTCGCTCGTGAAAACGGATAGATCGCAGAAGAGAGGT CCATGGCCATGGCAGCGACAGTGTCGCGTCCGGCATCTTTTGTAGTGACTGTTCCTCTTC CTAAGATGAGTACTTGTTTCAAAGGCCTCTCTCTGCAAGTGCAGCAACGCCCCGCCATCT CTGGGCCTCTCTCCACCTCCTCGCAGGGTTCTCAACTTCCCATCGTGTCCCAACAAAAGC ACTACAAGGCGAAGACGCACCAGGCTTCCGCCAAGCGATTCAGGGTTACTGGCAGTGGAA AGATTATGTGTAGAAGAGCAGGAAAACAGCATTTGTTGTGGAAGAAGAACACCAAGAGAA GGAAGCGTCTGTCAAAGATGGCCCTTGTAGAGAAGTGTGATTATCAAAACATCACTCGTG CTCTTCCCTATTTGAAAGTTTCAAAATCATGAGTCTTCTACGGCAAGGCCGCTTCACCCA AGAAGAGTGAGTGATTCCCTATGAGCTTCTTAGAGAGAGTGGATGCCTCATTGGGGATAA GATTGTAACTTCTGTATCGCACATGAATTTCCCTCTTGCCACAATGTGTAATACTTTGGA GCTTGGGCTGCAGGCCTCCTTAAGACTTATAAGCCAATTTCTTCTCCCTGGTGCAAAGGC TACTTGTTTGCTC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23326 |
Definition |
sp|P23326|RK35_SPIOL 50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea |
Align length |
96 |
Score (bit) |
102.0 |
E-value |
2.0e-21 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q84K87 |
Definition |
tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays |
Align length |
140 |
Score (bit) |
110.0 |
E-value |
6.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962077|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0011_O08, 5' (673 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays GN=... 110 6e-23 tr|A9NKM1|A9NKM1_PICSI 50S ribosomal protein L35 OS=Picea sitche... 110 6e-23 tr|B6TBA3|B6TBA3_MAIZE 50S ribosomal protein L35 OS=Zea mays PE=... 110 8e-23 tr|Q67W51|Q67W51_ORYSJ 50S ribosomal protein L35 OS=Oryza sativa... 110 1e-22 tr|A2YFL7|A2YFL7_ORYSI 50S ribosomal protein L35 OS=Oryza sativa... 110 1e-22 tr|A5BPA4|A5BPA4_VITVI 50S ribosomal protein L35 OS=Vitis vinife... 108 2e-22 tr|A7QZA8|A7QZA8_VITVI 50S ribosomal protein L35 OS=Vitis vinife... 107 7e-22 tr|Q84VR0|Q84VR0_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 106 2e-21 tr|Q84VR3|Q84VR3_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 104 6e-21 tr|B7FGY3|B7FGY3_MEDTR Putative uncharacterized protein OS=Medic... 103 7e-21 tr|Q84VR2|Q84VR2_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 102 3e-20 tr|A9PBS9|A9PBS9_POPTR 50S ribosomal protein L35 OS=Populus tric... 102 3e-20 tr|Q84VR4|Q84VR4_MAIZE 50S ribosomal protein L35 (Fragment) OS=Z... 101 5e-20 tr|Q9LWB6|Q9LWB6_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 100 1e-19 tr|Q8VZ55|Q8VZ55_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 100 1e-19 tr|A9TWE0|A9TWE0_PHYPA 50S ribosomal protein L35 OS=Physcomitrel... 85 5e-15 tr|A9TUC8|A9TUC8_PHYPA 50S ribosomal protein L35 (Fragment) OS=P... 85 5e-15 tr|O82237|O82237_ARATH 50S ribosomal protein L35 OS=Arabidopsis ... 77 1e-12 tr|B4VNM3|B4VNM3_9CYAN Ribosomal protein L35 OS=Microcoleus chth... 67 8e-10 tr|A3YWL8|A3YWL8_9SYNE 50S ribosomal protein L35 OS=Synechococcu... 67 1e-09 tr|B5YLD0|B5YLD0_THEYD Ribosomal protein L35 OS=Thermodesulfovib... 67 1e-09 tr|A1HTD0|A1HTD0_9FIRM 50S ribosomal protein L35 OS=Thermosinus ... 67 1e-09 tr|Q7XYL4|Q7XYL4_BIGNA 50S ribosomal protein L35 (Fragment) OS=B... 67 1e-09 tr|B2J0D1|B2J0D1_NOSP7 Ribosomal protein L35 OS=Nostoc punctifor... 66 2e-09 tr|B5W9E8|B5W9E8_SPIMA Ribosomal protein L35 OS=Arthrospira maxi... 65 3e-09 tr|B8HPI6|B8HPI6_9CHRO Ribosomal protein L35 OS=Cyanothece sp. P... 65 4e-09 tr|B1X4K4|B1X4K4_PAUCH 50S ribosomal protein L35 OS=Paulinella c... 65 4e-09 tr|A0ZI58|A0ZI58_NODSP 50S ribosomal protein L35 OS=Nodularia sp... 65 5e-09 tr|B2ULJ0|B2ULJ0_AKKM8 Ribosomal protein L35 OS=Akkermansia muci... 64 7e-09 tr|B7C325|B7C325_9FIRM Putative uncharacterized protein OS=Roseb... 64 7e-09
>tr|Q84K87|Q84K87_MAIZE 50S ribosomal protein L35 OS=Zea mays GN=prpl35-1 PE=2 SV=1 Length = 143
Score = 110 bits (276), Expect = 6e-23 Identities = 67/140 (47%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +3
Query: 63 MAMAATVSRPASFVVTV-----PLPKMSTCFKGLSL----QVQQRPAISGPLS---TSSQ 206 MA++ +++RPA V+ LP S F S +++ PL +S Sbjct: 1 MALSLSLARPAPLAVSAGAGARKLPAASLAFPAKSFFGAPLAATAASVASPLPRKPATST 60
Query: 207 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 386 S + + +K YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM Sbjct: 61 TSLEVVAAGKKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQ 120
Query: 387 VEKCDYQNITRALPYLKVSK 446 V K DY N+T ALPYLKV++ Sbjct: 121 VNKSDYDNVTGALPYLKVNR 140
>tr|A9NKM1|A9NKM1_PICSI 50S ribosomal protein L35 OS=Picea sitchensis PE=2 SV=1 Length = 153
Score = 110 bits (276), Expect = 6e-23 Identities = 69/141 (48%), Positives = 82/141 (58%), Gaps = 13/141 (9%) Frame = +3
Query: 63 MAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISGPLSTSSQGSQLPI------ 224 +A V RP + + LP S FKGLSL + + + S G Q I Sbjct: 13 LAHVFPVKRPLN---STTLPLSSLSFKGLSLNLSSNGSRATGFSQWVLGRQSAIHPRRQG 69
Query: 225 -------VSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMA 383 V K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKR+ RLSKM Sbjct: 70 SGFETVTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLVKKNTKRKNRLSKMT 129
Query: 384 LVEKCDYQNITRALPYLKVSK 446 V+K DY N+ ALPYLKV++ Sbjct: 130 YVDKSDYANVIGALPYLKVNR 150
>tr|B6TBA3|B6TBA3_MAIZE 50S ribosomal protein L35 OS=Zea mays PE=2 SV=1 Length = 143
Score = 110 bits (275), Expect = 8e-23 Identities = 67/140 (47%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +3
Query: 63 MAMAATVSRPASFVVTV-----PLPKMSTCFKGLSL----QVQQRPAISGPLS---TSSQ 206 MA++ +++RPA V+ LP S F S +++ PL +S Sbjct: 1 MALSLSLARPAPLAVSAGAGARKLPAASLAFPAKSFFGAPLAATAASVASPLPRKPATST 60
Query: 207 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 386 S +V+ + YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM Sbjct: 61 TSLEVVVAGKNGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQ 120
Query: 387 VEKCDYQNITRALPYLKVSK 446 V K DY N+T ALPYLKV++ Sbjct: 121 VNKSDYDNVTGALPYLKVNR 140
>tr|Q67W51|Q67W51_ORYSJ 50S ribosomal protein L35 OS=Oryza sativa subsp. japonica GN=OJ1226_A12.25 PE=2 SV=1 Length = 146
Score = 110 bits (274), Expect = 1e-22 Identities = 55/76 (72%), Positives = 63/76 (82%) Frame = +3
Query: 222 IVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCD 401 +V+ K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKRRKRLSKM V K D Sbjct: 69 VVAAGKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMIQVNKSD 128
Query: 402 YQNITRALPYLKVSKS 449 Y N+T ALPYLKV+++ Sbjct: 129 YNNVTGALPYLKVNRN 144
>tr|A2YFL7|A2YFL7_ORYSI 50S ribosomal protein L35 OS=Oryza sativa subsp. indica GN=OsI_23900 PE=3 SV=1 Length = 146
Score = 110 bits (274), Expect = 1e-22 Identities = 55/76 (72%), Positives = 63/76 (82%) Frame = +3
Query: 222 IVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCD 401 +V+ K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKNTKRRKRLSKM V K D Sbjct: 69 VVAAGKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLSKKNTKRRKRLSKMIQVNKSD 128
Query: 402 YQNITRALPYLKVSKS 449 Y N+T ALPYLKV+++ Sbjct: 129 YNNVTGALPYLKVNRN 144
>tr|A5BPA4|A5BPA4_VITVI 50S ribosomal protein L35 OS=Vitis vinifera GN=GSVIVT00009281001 PE=3 SV=1 Length = 153
Score = 108 bits (271), Expect = 2e-22 Identities = 70/141 (49%), Positives = 87/141 (61%), Gaps = 12/141 (8%) Frame = +3
Query: 60 SMAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISG-----PLSTS-------S 203 S+ + ++ S P+S V + + S + SL++ ISG PL S S Sbjct: 11 SLRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLRHSTLNSPSPS 70
Query: 204 QGSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMA 383 Q S L +VS K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKN KRR RLSKM Sbjct: 71 QPSSLTVVSA-KGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMH 129
Query: 384 LVEKCDYQNITRALPYLKVSK 446 V + DY N+ ALPYLKV++ Sbjct: 130 PVSRSDYDNVIGALPYLKVNR 150
>tr|A7QZA8|A7QZA8_VITVI 50S ribosomal protein L35 OS=Vitis vinifera GN=GSVIVT00010569001 PE=3 SV=1 Length = 153
Score = 107 bits (267), Expect = 7e-22 Identities = 69/140 (49%), Positives = 86/140 (61%), Gaps = 12/140 (8%) Frame = +3
Query: 63 MAMAATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISG-----PLSTS-------SQ 206 + + ++ S P+S V + + S + SL++ ISG PL S SQ Sbjct: 12 LRLPSSFSSPSSVRVPNEVVQFSPFSRACSLKLSSSRNISGFAPILPLRHSTLNSPSPSQ 71
Query: 207 GSQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMAL 386 S L +VS K YK KTH+ASAKRFRVTG GKI+ RRAGKQHLL KKN KRR RLSKM Sbjct: 72 PSSLTVVSA-KGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMHP 130
Query: 387 VEKCDYQNITRALPYLKVSK 446 V + DY N+ ALPYLKV++ Sbjct: 131 VSRSDYDNVIGALPYLKVNR 150
>tr|Q84VR0|Q84VR0_MAIZE 50S ribosomal protein L35 (Fragment) OS=Zea mays GN=prpl35-1 PE=2 SV=1 Length = 120
Score = 106 bits (264), Expect = 2e-21 Identities = 63/125 (50%), Positives = 83/125 (66%) Frame = +3
Query: 72 AATVSRPASFVVTVPLPKMSTCFKGLSLQVQQRPAISGPLSTSSQGSQLPIVSQQKHYKA 251 AA+++ PA PL + ++ + ++PA S +TS + + + +K YK Sbjct: 3 AASLAFPAKSFFGAPLAATAA---SVASPLPRKPATS---TTSLE----VVAAGKKGYKM 52
Query: 252 KTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCDYQNITRALPY 431 KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM V K DY N+T ALPY Sbjct: 53 KTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQVNKSDYDNVTGALPY 112
Query: 432 LKVSK 446 LKV++ Sbjct: 113 LKVNR 117
>tr|Q84VR3|Q84VR3_MAIZE 50S ribosomal protein L35 (Fragment) OS=Zea mays GN=prpl35-1 PE=3 SV=1 Length = 76
Score = 104 bits (259), Expect = 6e-21 Identities = 52/71 (73%), Positives = 59/71 (83%) Frame = +3
Query: 234 QKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKRLSKMALVEKCDYQNI 413 +K YK KTH+ASAKRFRVTG GKI+ R AGKQHLL KKNTKR+KRLSKM V K DY N+ Sbjct: 3 KKGYKMKTHKASAKRFRVTGRGKIVRRCAGKQHLLAKKNTKRKKRLSKMVQVNKSDYDNV 62
Query: 414 TRALPYLKVSK 446 T ALPYLKV++ Sbjct: 63 TGALPYLKVNR 73
>tr|B7FGY3|B7FGY3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 148
Score = 103 bits (258), Expect = 7e-21 Identities = 68/146 (46%), Positives = 87/146 (59%), Gaps = 18/146 (12%) Frame = +3
Query: 63 MAMA---ATVSRPASFVVTVPLPKMSTCFKGL---------SLQVQQRPAISGPLSTSSQ 206 MA+A ATVS A+ ++ P F + SL++ +IS P+ + Sbjct: 1 MALASATATVSSFAALRLSPPSTSTRVSFSSVKSPFSNNVNSLKLNWSCSISAPILNQNH 60
Query: 207 G------SQLPIVSQQKHYKAKTHQASAKRFRVTGSGKIMCRRAGKQHLLWKKNTKRRKR 368 L IVS K YK KTH+ASAKRFRVTG+GKI+ RRAGKQHLL+KKN KR+ R Sbjct: 61 SIVTTSPRSLTIVSA-KGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHLLYKKNKKRKLR 119
Query: 369 LSKMALVEKCDYQNITRALPYLKVSK 446 LSKM V + DY N+ ALPYLKV++ Sbjct: 120 LSKMIQVNRSDYDNVIGALPYLKVNR 145
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