NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962106
Clone id TST39A01NGRL0011_P13
Library
Length 650
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0011_P13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTAGCCATAGCCAACACCAGACAGTTTCGGCATCGAGGAAGCTCTTCTTTTAGTGGGTTT
TCAGGAGTCAAGAGTGATTATCAAAGATTAGCGGGTAATTAATCTCTGCATTCCCTGCAT
CATCATGCAAGGCGCAGCGCTGCTCACTAGCCCCGCTGCCACTGCTGCTGCATTGACTCC
CTGTGCTGCATTCCTGCGCTACACCTCCACAAATGTGAGGTGTACCAGTCCCCTCCCCTT
GTTTTCTTCAAGATCTCTGCAACAGAAGCGGCGCCCACTTCTTCGTGCACAGCAACAAGA
TCAGGATTATGTTACCTACGATGCGAAGAAATCGGTTTTCCCTGCTGAGGCTTGTGAAGA
GCTCGGTGGTGAAGCATGTGAAGTTGATGGTGTTGGCCCTGAGGTGAAGGGCTCTGCCTC
TGCTCCCAAGCAACAATCTTCGTCGAAGGCTGGGAGTGGTCCGGATCGGGAGTACGTGGA
TTACAAGGAAAACAAGACTGTCTTTCCTGGAGAGGCTTGCGATGACCTCGGAGGTGAGTT
TTGCGAGCCAGAGTACCAAACTGGTGTTTTCCCGGAGAAGGCAGCGGCCAAGAAGTGAAG
TCAGGAACTGTTTGCTGTTTTGTTCAGCTCCTTATCAACAGTTTCTTAGC
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 28
Score (bit) 49.3
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962106|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_P13, 5'
         (650 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su...    49   2e-05
sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus ...    31   6.4  
sp|O13549|VPS63_YEAST Putative uncharacterized protein VPS63 OS=...    30   8.4  

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
           subsp. japonica GN=LIR1 PE=2 SV=1
          Length = 128

 Score = 49.3 bits (116), Expect = 2e-05
 Identities = 20/28 (71%), Positives = 23/28 (82%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCE 547
           DR+Y+ Y E  TVFP EACDDLGGEFC+
Sbjct: 99  DRDYLSYDEPTTVFPEEACDDLGGEFCK 126



 Score = 36.2 bits (82), Expect = 0.15
 Identities = 17/34 (50%), Positives = 22/34 (64%)
 Frame = +2

Query: 476 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPE 577
           VDY  N +VFP EACD +GGE C  +    ++PE
Sbjct: 50  VDYSSNISVFPMEACDLIGGEACNVQ----MYPE 79


>sp|Q9QXG9|TINF2_MOUSE TERF1-interacting nuclear factor 2 OS=Mus
           musculus GN=Tinf2 PE=2 SV=1
          Length = 341

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 22/46 (47%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
 Frame = -1

Query: 617 QQTVPDFTSWPLPSP--GKHQFGTLARKTHLRGHR---KPLQERQS 495
           QQT P F S PLP    G HQ  +L    HL GHR    PL +R+S
Sbjct: 211 QQTRPAFHS-PLPKAKLGPHQPASLEHPEHLAGHRFNLAPLGKRKS 255


>sp|O13549|VPS63_YEAST Putative uncharacterized protein VPS63
           OS=Saccharomyces cerevisiae GN=VPS63 PE=5 SV=1
          Length = 108

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -2

Query: 616 SKQFLTSLLGRCLLRENTSLVLWLAKLTSEVIASLSRKDSLVFL 485
           SK +   L  RCL  +  S +LW+AK+  +++ +   ++SL+FL
Sbjct: 53  SKLYSKRLPNRCLNFKTASQLLWIAKM--QIVQTKINRESLIFL 94
tr_hit_id Q3ZDJ4
Definition tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) OS=Picea abies
Align length 44
Score (bit) 76.6
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962106|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0011_P13, 5'
         (650 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O...    77   1e-12
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea...    77   1e-12
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea...    75   3e-12
tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom...    75   3e-12
tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic...    70   1e-10
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=...    68   4e-10
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe...    66   2e-09
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ...    66   2e-09
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m...    66   2e-09
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B...    64   6e-09
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ...    63   1e-08
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ...    63   2e-08
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet...    62   2e-08
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1       62   4e-08
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T...    60   9e-08
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE...    60   1e-07
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome...    58   6e-07
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali...    55   3e-06
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul...    55   3e-06
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul...    55   3e-06
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1        49   2e-04
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen...    49   2e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P...    48   6e-04
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ...    35   5.2  

>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
           OS=Picea abies GN=LIR PE=2 SV=1
          Length = 117

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
 Frame = +2

Query: 464 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 592
           DREYV+Y  E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK  AK
Sbjct: 74  DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 117


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
 Frame = +2

Query: 464 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 592
           DREYV+Y  E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK  AK
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 143


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 75.5 bits (184), Expect = 3e-12
 Identities = 35/44 (79%), Positives = 38/44 (86%), Gaps = 1/44 (2%)
 Frame = +2

Query: 464 DREYVDY-KENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAAK 592
           DREYV+Y  E KTVFPGEACDDLGGEFCEPEYQ+GV+ EK  AK
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFCEPEYQSGVYKEKEPAK 143


>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
           PE=4 SV=1
          Length = 139

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 32/39 (82%), Positives = 34/39 (87%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEK 580
           DREY++Y   KTVFPGEACDDLGGEFCEPEYQ GVF EK
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFCEPEYQEGVFQEK 139


>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 144

 Score = 70.1 bits (170), Expect = 1e-10
 Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 1/127 (0%)
 Frame = +2

Query: 194 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 370
           + + +TN+  + P  L +SRS   +   + +     D   V Y++  SVFP         
Sbjct: 21  ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 371 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEP 550
                D + PEV                   +REY+DY E KTVF  EACDDLGG FCEP
Sbjct: 79  DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFCEP 137

Query: 551 EYQTGVF 571
           +YQ GV+
Sbjct: 138 DYQKGVY 144


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
           SV=1
          Length = 137

 Score = 68.2 bits (165), Expect = 4e-10
 Identities = 42/112 (37%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
 Frame = +2

Query: 248 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 415
           +RS+ ++ +  L+A+     QD   V Y +  SVFP             V+ + PEV   
Sbjct: 30  TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 416 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVF 571
                           +REY+ Y   KTVFP EACDDLGGEFC+PEYQ GV+
Sbjct: 89  PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFCDPEYQKGVY 137


>tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium
           perenne GN=LIR1 PE=2 SV=1
          Length = 136

 Score = 66.2 bits (160), Expect = 2e-09
 Identities = 29/38 (76%), Positives = 31/38 (81%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPE 577
           +REY+ Y E KTVFPGEACDDLGGEFCE  YQTGV  E
Sbjct: 99  EREYLSYDEAKTVFPGEACDDLGGEFCEAPYQTGVSKE 136



 Score = 33.9 bits (76), Expect = 8.8
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = +2

Query: 476 VDYKENKTVFPGEACDDLGGEFCE-----PEYQTGVFPEKAAAKK 595
           VDY  + +VFP EACD +G E CE     PE +       AAA K
Sbjct: 50  VDYSSDVSVFPMEACDLVGVEACEAAEMYPETKLSDSASAAAASK 94


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/42 (71%), Positives = 32/42 (76%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 589
           DR+Y+ Y E KTVFPGEACDDLGGEFCE  YQ GV  E A A
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138



 Score = 36.2 bits (82), Expect = 1.8
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 476 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 589
           +DY  + +VFP EACD LGG+ C         P  AAA
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDACNGPMXPEAKPXSAAA 87


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 65.9 bits (159), Expect = 2e-09
 Identities = 30/42 (71%), Positives = 32/42 (76%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 589
           DR+Y+ Y E KTVFPGEACDDLGGEFCE  YQ GV  E A A
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSKELAHA 138



 Score = 35.4 bits (80), Expect = 3.0
 Identities = 17/38 (44%), Positives = 21/38 (55%)
 Frame = +2

Query: 476 VDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 589
           +DY  + +VFP EACD LGG+ C         P  AAA
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDACNGPMFPEAKPASAAA 87


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 125

 Score = 65.5 bits (158), Expect = 3e-09
 Identities = 30/42 (71%), Positives = 32/42 (76%)
 Frame = +2

Query: 464 DREYVDYKENKTVFPGEACDDLGGEFCEPEYQTGVFPEKAAA 589
           DR+Y+ Y E KTVFPGEACDDLGGEFCE  YQ GV  E A A
Sbjct: 84  DRDYLSYDEPKTVFPGEACDDLGGEFCEAPYQDGVSRELAHA 125