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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962138
Clone id TST39A01NGRL0013_A24
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_A24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGATACCACACCGCACTTAGCGCTCTCCCGCCCCTTCGTCCTCTCCGCACAACCATTCTC
CTTCTCCCCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACA
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTGTCCACAATTCATCCATGAAT
TCTGCCAACCCTCCCCCAAGTTCTGGCTATAGCGAGCTCCTGGAGCGCGTCTCCTCCCTG
GAGCAGTCTGTCCAGAAGCTTCTTTCAGAAAAGAAACGCTCAAATTCTCAGCAGCATCTG
CTTCATTTGGAACAGCAACACGAGACTTGCTCATCTCCCAGGTTGCGAGTGCCTTACCCT
TCCACATTTGGAGTGACCAGCGCTTCCGTGCCTTCCGTTTTCCAGATGCCCCTGCACTAT
CCTCGATTCTCACGTGCGGACTATGAGGCCATGGAGGAGTGGAGGCTGGCTCGCTTGCTG
GAAGAGTATGGTCTGCCTATCCCTTCCACTCTCGCTGACATGCGCGAGCTTGCCA
■■Homology search results ■■ -
sp_hit_id P0A2I5
Definition sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella typhimurium
Align length 41
Score (bit) 31.2
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962138|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_A24, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella...    31   3.3  
sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella...    31   3.3  
sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichi...    31   3.3  
sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos ta...    30   7.4  
sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing prote...    30   7.4  
sp|Q80U38|K0323_MOUSE Protein KIAA0323 OS=Mus musculus GN=Kiaa03...    30   9.7  

>sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella
           typhimurium GN=parE PE=3 SV=1
          Length = 630

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 421 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 302
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella
           typhi GN=parE PE=3 SV=1
          Length = 630

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 421 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 302
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichia
           coli (strain K12) GN=parE PE=1 SV=3
          Length = 630

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -1

Query: 421 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 302
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos
           taurus GN=ARHGAP10 PE=2 SV=1
          Length = 785

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = -1

Query: 532 QARACQREWKG*ADHTLPASEPASTPPWPHSPHVRIEDSAGASGK-------RKAR 386
           QAR+   +W      T P+  PA TPP P  P V +   A  + K       RKAR
Sbjct: 678 QARSSAVQWLNPQSPTTPSCSPAVTPPSPKLPPVPLSLPATVADKPPESIISRKAR 733


>sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1
            OS=Mus musculus GN=Brwd1 PE=1 SV=1
          Length = 2304

 Score = 30.0 bits (66), Expect = 7.4
 Identities = 19/52 (36%), Positives = 24/52 (46%)
 Frame = -1

Query: 448  PHSPHVRIEDSAGASGKRKARKRWSLQMWKGKALATWEMSKSRVAVPNEADA 293
            PHS H  I DS   S  R  RK W+         AT + +KSR    +E D+
Sbjct: 1706 PHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCK-TKSRPIESSEEDS 1756


>sp|Q80U38|K0323_MOUSE Protein KIAA0323 OS=Mus musculus GN=Kiaa0323
           PE=2 SV=2
          Length = 671

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -1

Query: 484 LPASEPASTPPWPHSPHVRIEDSAGASGKRKARKRWSLQMWK 359
           +P+  PA  PPWP     R  D      K++A  R     WK
Sbjct: 353 VPSPPPAPEPPWPCGDRDRDRDRGDRGDKQQAGARGRGSPWK 394
tr_hit_id B6SYT2
Definition tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 47
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962138|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_A24, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m...    68   3e-10
tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m...    65   2e-09
tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00...    64   6e-09
tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs...    64   6e-09
tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza...    64   6e-09
tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08...    62   1e-08
tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m...    62   2e-08
tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza...    61   3e-08
tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    61   4e-08
tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m...    61   4e-08
tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m...    61   4e-08
tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who...    60   5e-08
tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom...    60   5e-08
tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi...    60   7e-08
tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom...    60   7e-08
tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen...    60   7e-08
tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul...    60   9e-08
tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2...    59   1e-07
tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m...    59   2e-07
tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m...    58   3e-07
tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom...    57   5e-07
tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m...    57   6e-07
tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2...    56   1e-06
tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=...    56   1e-06
tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556...    56   1e-06
tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562...    56   1e-06
tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|A3BC93|A3BC93_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi...    48   3e-04

>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 87

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = +1

Query: 394 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           S FQMPLHYPR SR DYEAM EW+L RLL EYGLP+  T+   R  A
Sbjct: 28  SYFQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFA 74


>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 99

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/47 (61%), Positives = 34/47 (72%)
 Frame = +1

Query: 394 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           S F+MPLHYPR+ +ADYEAM EWR+  LL EYGLP+   L   RE A
Sbjct: 43  SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFA 89


>tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein
           OSJNBa0009J19.26 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0009J19.26 PE=4 SV=1
          Length = 82

 Score = 63.5 bits (153), Expect = 6e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 400 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A
Sbjct: 28  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFA 72


>tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0523300 PE=4 SV=1
          Length = 98

 Score = 63.5 bits (153), Expect = 6e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 400 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A
Sbjct: 44  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFA 88


>tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23191 PE=4 SV=1
          Length = 82

 Score = 63.5 bits (153), Expect = 6e-09
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = +1

Query: 400 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A
Sbjct: 28  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFA 72


>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38
           (Putative uncharacterized protein) (Putative
           uncharacterized protein P0443E05.1) OS=Oryza sativa
           subsp. japonica GN=P0483F08.38 PE=4 SV=1
          Length = 79

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +1

Query: 400 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  A
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFA 64


>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00937 PE=4 SV=1
          Length = 79

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 27/45 (60%), Positives = 31/45 (68%)
 Frame = +1

Query: 400 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  A
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFA 64


>tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 104

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 30/63 (47%), Positives = 39/63 (61%)
 Frame = +1

Query: 346 RVPYPSTFGVTSASVPSVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMR 525
           +V  P T   +S +    F MPLHYPR+ +ADYE+M EWR+  LL EYGLP+   L   R
Sbjct: 36  KVEGPRTMNCSSYT----FHMPLHYPRYKKADYESMPEWRVDCLLREYGLPVDGELDSKR 91

Query: 526 ELA 534
           + A
Sbjct: 92  KFA 94


>tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06636 PE=4 SV=1
          Length = 96

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +1

Query: 394 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           S F+MPLHYPR+ +A+YEAM EWR+  LL EYGLP+   L   R  A
Sbjct: 40  SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGNLDAKRRFA 86


>tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subsp.
           japonica GN=B1178F07.4 PE=4 SV=1
          Length = 94

 Score = 60.8 bits (146), Expect = 4e-08
 Identities = 27/47 (57%), Positives = 33/47 (70%)
 Frame = +1

Query: 394 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELA 534
           S F+MPLHYPR+ +A+YEAM EWR+  LL EYGLP+   L   R  A
Sbjct: 38  SSFRMPLHYPRYKKAEYEAMPEWRVDCLLREYGLPVDGDLDAKRRFA 84