DK962167 |
Clone id |
TST39A01NGRL0013_C05 |
Library |
TST39 |
Length |
471 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_C05. 5' end sequence. |
Accession |
DK962167 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2870Contig1 |
Sequence |
GGATTGGAAGCTTGATACTCTCTGTGATCTATATGAGACTCTTGCGATCACTCAGAGTGT CATTTTTGTCAACACTCGCCGTATGGGTGATTGGCTTACGGACAAAATGAGAGCAAGAGA TCATACAGTTGCGGCGACTCATGGAGACTTGGACCAAAATACCAGAGATATTATTATGAG GGAGTTCCGATCTGGATCTTCTCGAGTGCTCATAACCACGGATCTTCTTGCTCGAGGGAT TGACGTGCGGCACGTTTCCCTTGTTATCAATTATGATTTGCCTACCCAACCTGAAAACTA TCTCCGCAGAATTGGGCGGGGTGGCCGCTTTGGTAGAAAGGGAGTGGCAATCAACTTTGT TACCCAACAATATGAAAGGATGCTGACGGACGTTCAAAGGTTTTACAATGTTGTGGTAGA TGAACTACCATCTAATGTTGCAGATCTCATATACGATATATGTGCAGTGGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q6Z2Z4 |
Definition |
sp|Q6Z2Z4|IF4A3_ORYSJ Eukaryotic initiation factor 4A-3 OS=Oryza sativa subsp. japonica |
Align length |
150 |
Score (bit) |
241.0 |
E-value |
9.0e-64 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LRR8 |
Definition |
tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
150 |
Score (bit) |
246.0 |
E-value |
4.0e-64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962167|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_C05, 5' (471 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea... 246 4e-64 tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella paten... 243 3e-63 tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella paten... 243 3e-63 tr|B4FBK3|B4FBK3_MAIZE Eukaryotic initiation factor 4A OS=Zea ma... 242 8e-63 tr|B7EMF9|B7EMF9_ORYSJ cDNA clone:J033048E24, full insert sequen... 241 1e-62 tr|A7P4J8|A7P4J8_VITVI Chromosome chr4 scaffold_6, whole genome ... 241 1e-62 tr|A5BNE8|A5BNE8_VITVI Putative uncharacterized protein OS=Vitis... 241 1e-62 tr|A2X0V4|A2X0V4_ORYSI Putative uncharacterized protein OS=Oryza... 241 1e-62 tr|O24449|O24449_MAIZE Translational initiation factor eIF-4A OS... 241 1e-62 tr|B7EPR0|B7EPR0_ORYSJ cDNA clone:001-114-H08, full insert seque... 241 1e-62 tr|A9SY53|A9SY53_PHYPA Predicted protein OS=Physcomitrella paten... 241 1e-62 tr|A9P851|A9P851_POPTR Putative uncharacterized protein OS=Popul... 241 1e-62 tr|A7P6N2|A7P6N2_VITVI Chromosome chr9 scaffold_7, whole genome ... 241 1e-62 tr|A2YGP5|A2YGP5_ORYSI Putative uncharacterized protein OS=Oryza... 241 1e-62 tr|Q9SYS8|Q9SYS8_MAIZE Translation initiation factor 4A2 (Fragme... 241 2e-62 tr|A9RVE1|A9RVE1_PHYPA Predicted protein OS=Physcomitrella paten... 240 3e-62 tr|A8IP17|A8IP17_CHLRE Eukaryotic initiation factor 4A-like prot... 239 4e-62 tr|A7PE49|A7PE49_VITVI Chromosome chr11 scaffold_13, whole genom... 239 4e-62 tr|A9PA36|A9PA36_POPTR Putative uncharacterized protein OS=Popul... 239 5e-62 tr|A2Q689|A2Q689_MEDTR Helicase, C-terminal OS=Medicago truncatu... 239 5e-62 tr|Q8H1A5|Q8H1A5_PEA DEAD box RNA helicase OS=Pisum sativum PE=2... 239 7e-62 tr|Q6T8C6|Q6T8C6_HELAN Initiation factor eIF4A-15 OS=Helianthus ... 239 7e-62 tr|B8LMF4|B8LMF4_PICSI Putative uncharacterized protein OS=Picea... 239 7e-62 tr|B7FJJ2|B7FJJ2_MEDTR Putative uncharacterized protein OS=Medic... 239 7e-62 tr|A9PD17|A9PD17_POPTR Putative uncharacterized protein OS=Popul... 239 7e-62 tr|A8MRZ7|A8MRZ7_ARATH Uncharacterized protein At3g13920.3 OS=Ar... 239 7e-62 tr|A9PA53|A9PA53_POPTR Putative uncharacterized protein OS=Popul... 238 9e-62 tr|Q9SE87|Q9SE87_BRAOL EIF4A protein (Fragment) OS=Brassica oler... 238 1e-61 tr|O24558|O24558_MAIZE Translation initiation factor OS=Zea mays... 238 1e-61 tr|Q4U474|Q4U474_PENAM Eukaryotic initiation factor 4A OS=Pennis... 238 1e-61
>tr|B8LRR8|B8LRR8_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 413
Score = 246 bits (628), Expect = 4e-64 Identities = 124/150 (82%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 DWKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMRARDHTV+ATHGD+DQNTRDIIMR Sbjct: 264 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMR 323
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNVVV+ELPSNVADL+ Sbjct: 384 TKDDERMLQDIQRFYNVVVEELPSNVADLL 413
>tr|A9SGN5|A9SGN5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233331 PE=3 SV=1 Length = 413
Score = 243 bits (621), Expect = 3e-63 Identities = 121/150 (80%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 +WKLDTLCDLYETLAITQSVIF+NTRR DWLTDKMRARDHTV+ATHGD+DQNTRDIIMR Sbjct: 264 EWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMR 323
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T++ ERML D+QRFYN VV+ELPSNVADL+ Sbjct: 384 TKEDERMLQDIQRFYNTVVEELPSNVADLL 413
>tr|A9TZ99|A9TZ99_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_226898 PE=3 SV=1 Length = 413
Score = 243 bits (620), Expect = 3e-63 Identities = 120/150 (80%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 +WKLDTLCDLYETLAITQSVIF+NTRR DWLTDKMRARDHTV+ATHGD+DQNTRDIIMR Sbjct: 264 EWKLDTLCDLYETLAITQSVIFINTRRKVDWLTDKMRARDHTVSATHGDMDQNTRDIIMR 323
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T++ ERML D+QRFYN V++ELPSNVADL+ Sbjct: 384 TKEDERMLQDIQRFYNTVIEELPSNVADLL 413
>tr|B4FBK3|B4FBK3_MAIZE Eukaryotic initiation factor 4A OS=Zea mays PE=2 SV=1 Length = 410
Score = 242 bits (617), Expect = 8e-63 Identities = 121/150 (80%), Positives = 130/150 (86%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 DWKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 261 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 320
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 321 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 380
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNV V+ELP+NVADL+ Sbjct: 381 TRDDERMLFDIQRFYNVTVEELPANVADLL 410
>tr|B7EMF9|B7EMF9_ORYSJ cDNA clone:J033048E24, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 414
Score = 241 bits (616), Expect = 1e-62 Identities = 120/150 (80%), Positives = 130/150 (86%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 DWKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 265 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 324
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 384
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNV ++ELP+NVADL+ Sbjct: 385 TRDDERMLFDIQRFYNVTIEELPANVADLL 414
>tr|A7P4J8|A7P4J8_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032180001 PE=3 SV=1 Length = 413
Score = 241 bits (616), Expect = 1e-62 Identities = 121/150 (80%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 +WKL+TLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 323
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNVVV+ELPSNVADL+ Sbjct: 384 TKDDERMLFDIQRFYNVVVEELPSNVADLL 413
>tr|A5BNE8|A5BNE8_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040122 PE=3 SV=1 Length = 413
Score = 241 bits (616), Expect = 1e-62 Identities = 121/150 (80%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 +WKL+TLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 264 EWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 323
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 324 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 383
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNVVV+ELPSNVADL+ Sbjct: 384 TKDDERMLFDIQRFYNVVVEELPSNVADLL 413
>tr|A2X0V4|A2X0V4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05839 PE=3 SV=1 Length = 414
Score = 241 bits (616), Expect = 1e-62 Identities = 120/150 (80%), Positives = 130/150 (86%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 DWKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 265 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 324
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 384
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNV ++ELP+NVADL+ Sbjct: 385 TRDDERMLFDIQRFYNVTIEELPANVADLL 414
>tr|O24449|O24449_MAIZE Translational initiation factor eIF-4A OS=Zea mays GN=tif-4A3 PE=2 SV=1 Length = 414
Score = 241 bits (615), Expect = 1e-62 Identities = 119/150 (79%), Positives = 131/150 (87%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 DWKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMR+RDHTV+ATHGD+DQNTRDIIMR Sbjct: 265 DWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMR 324
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 384
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+Q+FYNV+++ELP+NVADL+ Sbjct: 385 TRDNERMLFDIQKFYNVLIEELPANVADLL 414
>tr|B7EPR0|B7EPR0_ORYSJ cDNA clone:001-114-H08, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 414
Score = 241 bits (615), Expect = 1e-62 Identities = 120/150 (80%), Positives = 130/150 (86%) Frame = +2
Query: 2 DWKLDTLCDLYETLAITQSVIFVNTRRMGDWLTDKMRARDHTVAATHGDLDQNTRDIIMR 181 +WKLDTLCDLYETLAITQSVIFVNTRR DWLTDKMR RDHTV+ATHGD+DQNTRDIIMR Sbjct: 265 EWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRGRDHTVSATHGDMDQNTRDIIMR 324
Query: 182 EFRSGSSRVLITTDLLARGIDVRHVSLVINYDLPTQPENYLXXXXXXXXXXXXXVAINFV 361 EFRSGSSRVLITTDLLARGIDV+ VSLVINYDLPTQPENYL VAINFV Sbjct: 325 EFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFV 384
Query: 362 TQQYERMLTDVQRFYNVVVDELPSNVADLI 451 T+ ERML D+QRFYNVV++ELP+NVADL+ Sbjct: 385 TRDDERMLFDIQRFYNVVIEELPANVADLL 414
|