DK962214
Clone id TST39A01NGRL0013_E05
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_E05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
AGAGGATGAGGCGCGCGCCAGCAGGTGCTGTCCTTGCGAGAAGACGGCTGCACAACAGGT
ATTTGTCCTGCCAGAGCACCTAGCGTTGTCCCATACGCAGCTTCCTTGTTTAATGCCATG
GGTTTTCAAGGTTATGGAAGGTGATTGCATTCAAGGGGGTTGCTCTACAGGCTCAGGTGG
CGAGGACGTGGCAGCAAGAGCTTTTTCATGCGTTGTTCTGCTCGTTTAATGCCGCAGGCG
GGCTTCTCAAGGTCGTTGAAGGCGATCGTGCAGGCTGAGGTTATGAGCACTGATTGTGTT
GCTCTTCGTGGTTCAGTACACGTGCTGAATGGAGCACGAGACATGTAATTTCCATGTACT
TATTGTAGCCTATATGACAGGCCACAAAGGGCAGAAAAATGCTTTGTAATAGGTTCTTGT
TTCGGGTGGTTATCATTATATTGTGTCATGGCAGCAAGTATGAGGATTTGTTTTGATGTA
TGAGCTTTTGAGCTACATTATCTAGTGGAAGATTCTTTGTCTGTCCTGCTTTGTACAAGC
TTTTGAGCTACATTATCTAGTGGAAGATTCTCTCT
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 31.2
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962214|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_E05, 5'
(575 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M... 31 3.9
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein... 31 3.9

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
musculus GN=Zdhhc24 PE=2 SV=2
Length = 284

Score = 31.2 bits (69), Expect = 3.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2

Query: 385 VACHIGYNKYMEITCLVLHSARVLNH 308
+ C +G++ Y CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
tatB homolog OS=Pseudomonas stutzeri (strain A1501)
GN=tatB PE=3 SV=1
Length = 139

Score = 31.2 bits (69), Expect = 3.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2

Query: 334 LHSARVLNHEEQHNQCS*PQPARSPSTTLRSPPA 233
LH+ R+L+ E + Q P PA +P+ T SPP+
Sbjct: 63 LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96


tr_hit_id B6PLA8
Definition tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 71
Score (bit) 35.4
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962214|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_E05, 5'
(575 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branc... 35 2.3
tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc... 34 5.0

>tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_116539 PE=4 SV=1
Length = 370

Score = 35.4 bits (80), Expect = 2.3
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = -2

Query: 379 CHIGYNKYMEITCLVLHSARVLNHEEQHNQ------CS*PQPARSPSTTLRSPPAALNEQ 218
C G +K+ E C + S +N + ++N C +P P L SPPA N Q
Sbjct: 106 CDCGNSKFPENKCKLDPSKAPVNTDNKYNHNFHGLYCICDRPYPDPDDEL-SPPAFFNPQ 164

Query: 217 NNA*KSSCCHV 185
NN +CC++
Sbjct: 165 NNTKSYTCCNL 175


>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
Length = 1131

Score = 34.3 bits (77), Expect = 5.0
Identities = 19/60 (31%), Positives = 30/60 (50%)
Frame = -1

Query: 494 SSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALCGLSYRLQ*VHGNYMSRAPFSTCT 315
S ++ +Q+ ++A + QY+ HP+ P+ + F L L NY SRAP T T
Sbjct: 91 SFRSFRLEQVRLVACVCQYSSEHPQALPMDQLFQGLSQLPKTETTDISNYFSRAPEETTT 150