NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962255
Clone id TST39A01NGRL0013_F23
Library
Length 650
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_F23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTCCATTCTCTACCATATCGGGCTGCGTCTCCTTGACACCGGGGCTTGCCATTTTCATCC
TGCTCTGCACATTTCTTCATACTCCCAAGCTCCTCTCCCAGCTGCTCTGCAGTACTTCTC
TGCATTCTATTTCGCCACCATCTTTTGCATATACGTAGATCTCCTAGCACTGCGTTTGAT
TTGCTTCTTTTCAATACAGCTATGGGCTTTCGGATTGTGCCCGCGCTGCTTGTAGCTTTT
GCTTGCATCCATTACGTAGCGCTCGCTTCTATCGACGATAACCTCGCTGCCAGCGCCAAG
AAATACAAATCCTGCAAGAAGAGGGCTGCCACTCTCTGCGGGCCTAGCTCCTTCACCTTC
TACCTGCACAACACCGTCTACAACCCCGCCGTCGACAACGCCAATAACTTCACCTCTGTG
TATGGCGTGCAACCTAATGTGACGTGGACCAATACCTACGCCTTCGGCACCACCTCCACA
TTCGAGGACCCGCTCACAAGCGGGCCCGCCACCGACTCGCAGCAGATAGGCGTAGCTCAC
GGCTTCTGGCAGCTCAACAGCAAGGTAGGCTACACTCTCTTCCACATCTTCACCGCCAAC
ATTACCGAGGGCGACCACAAGGGCACCATCGACATCTTTGGCCAGGTTCG
■■Homology search results ■■ -
sp_hit_id P13240
Definition sp|P13240|DR206_PEA Disease resistance response protein 206 OS=Pisum sativum
Align length 102
Score (bit) 53.1
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962255|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_F23, 5'
         (650 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13240|DR206_PEA Disease resistance response protein 206 OS=P...    53   1e-06
sp|O24006|AMP_IMPBA Antimicrobial peptides OS=Impatiens balsamin...    34   0.58 
sp|Q98NF9|ADEC_RHILO Adenine deaminase OS=Rhizobium loti GN=ade ...    34   0.58 
sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE...    30   8.4  

>sp|P13240|DR206_PEA Disease resistance response protein 206
           OS=Pisum sativum GN=PI206 PE=2 SV=2
          Length = 184

 Score = 53.1 bits (126), Expect = 1e-06
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQPNVTWTNTYA----FGTTSTFEDPLTSGPATD 516
           +  FY H+ +YN    NA N TS     P        A    FG    F+DP+T   +  
Sbjct: 33  NLVFYFHDILYNGK--NAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLS 90

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S+Q+G A GF+  ++K  YT +  FT  +    H+GTI   G
Sbjct: 91  SKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAG 132


>sp|O24006|AMP_IMPBA Antimicrobial peptides OS=Impatiens balsamina
           GN=AMP PE=1 SV=1
          Length = 333

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 155 RICKRWWRNRMQRSTAEQLGEELGSMKKCAEQDENGKPRC-QGDAARYGREW 3
           R CKRW  N  + +T +   EE    +    +D+ G+  C  G   RY R W
Sbjct: 246 RYCKRWCHNAAEEATLKAFEEEAAREQPVYSEDQWGRRCCGWGPGRRYCRRW 297


>sp|Q98NF9|ADEC_RHILO Adenine deaminase OS=Rhizobium loti GN=ade
           PE=3 SV=1
          Length = 605

 Score = 34.3 bits (77), Expect = 0.58
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 5/86 (5%)
 Frame = +1

Query: 385 PAVDNANNFTSVYGVQPNVTWTNTYAFGTTSTF-----EDPLTSGPATDSQQIGVAHGFW 549
           P +++A    +V  V   +TW N    G    F      DP+ SG    + + G   G  
Sbjct: 162 PGLEHAGAELTVADVAEAMTWENIIGLGEVMNFPGVAANDPVMSGEIAATVRAGKTVGGH 221

Query: 550 QLNSKVGYTLFHIFTANITEGDHKGT 627
             +  +G   FH + A   E DH+GT
Sbjct: 222 YASRDLGLP-FHGYVAGGPEDDHEGT 246


>sp|Q9NZV5|SELN_HUMAN Selenoprotein N OS=Homo sapiens GN=SEPN1 PE=1
           SV=4
          Length = 590

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = +1

Query: 397 NANNFTSVYGVQPNVTWTNTYAFGTTSTFEDPLTS 501
           NAN F  +  V+P    +N ++F  +STFEDP T+
Sbjct: 539 NANYFLDITSVKPEEIESNLFSF--SSTFEDPSTA 571
tr_hit_id Q9SDQ9
Definition tr|Q9SDQ9|Q9SDQ9_THUPL Dirigent protein OS=Thuja plicata
Align length 102
Score (bit) 52.4
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962255|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_F23, 5'
         (650 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9SDQ9|Q9SDQ9_THUPL Dirigent protein OS=Thuja plicata GN=psd_...    52   2e-05
tr|B2WS85|B2WS85_9BRAS Disease resistance-responsive family prot...    52   4e-05
tr|Q9SDQ8|Q9SDQ8_THUPL Dirigent-like protein OS=Thuja plicata GN...    51   5e-05
tr|Q9SYU1|Q9SYU1_PEA Pathogenesis-related protein OS=Pisum sativ...    51   7e-05
tr|Q9SDR1|Q9SDR1_THUPL Dirigent-like protein OS=Thuja plicata GN...    50   9e-05
tr|Q9SDR0|Q9SDR0_THUPL Dirigent-like protein OS=Thuja plicata GN...    50   9e-05
tr|Q9SDR5|Q9SDR5_THUPL Dirigent-like protein OS=Thuja plicata GN...    50   2e-04
tr|Q9SDR2|Q9SDR2_THUPL Dirigent-like protein OS=Thuja plicata GN...    50   2e-04
tr|A8IXC9|A8IXC9_BRACM Disease resistance response protein OS=Br...    50   2e-04
tr|Q9T017|Q9T017_ARATH Putative disease resistance response prot...    49   3e-04
tr|Q27J96|Q27J96_PICSI Dirigent protein pDIR16 OS=Picea sitchens...    49   3e-04
tr|B2WS65|B2WS65_ARAHA Putative disease resistance protein OS=Ar...    49   3e-04
tr|A7NXR4|A7NXR4_VITVI Chromosome chr5 scaffold_2, whole genome ...    49   3e-04
tr|Q9SUQ8|Q9SUQ8_ARATH Putative disease resistance response prot...    49   3e-04
tr|Q9SH66|Q9SH66_ARATH F22C12.8 (Putative dirigent protein) (At1...    49   3e-04
tr|Q9SDR3|Q9SDR3_THUPL Dirigent-like protein OS=Thuja plicata GN...    48   5e-04
tr|Q943Q0|Q943Q0_ORYSJ Putative uncharacterized protein P0011G08...    48   5e-04
tr|A2ZPF2|A2ZPF2_ORYSJ Putative uncharacterized protein OS=Oryza...    48   5e-04
tr|Q27JA4|Q27JA4_9CONI Dirigent protein pDIR8 OS=Picea engelmann...    48   6e-04
tr|A6YR10|A6YR10_PICSI Dirigent-like protein OS=Picea sitchensis...    48   6e-04
tr|A6YR09|A6YR09_PICSI Dirigent-like protein OS=Picea sitchensis...    47   8e-04
tr|Q27J97|Q27J97_PICSI Dirigent protein pDIR15 OS=Picea sitchens...    47   0.001
tr|Q27J94|Q27J94_PICGL Dirigent protein pDIR18 OS=Picea glauca P...    47   0.001
tr|A6YQZ8|A6YQZ8_PICSI Dirigent-like protein (Putative uncharact...    47   0.001
tr|A7NXR5|A7NXR5_VITVI Chromosome chr5 scaffold_2, whole genome ...    47   0.001
tr|A2WKV1|A2WKV1_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|Q8S3J2|Q8S3J2_THUPL Dirigent-like protein OS=Thuja plicata GN...    46   0.002
tr|Q27JA7|Q27JA7_9CONI Dirigent protein pDIR5 OS=Picea engelmann...    45   0.003
tr|Q27J93|Q27J93_PICSI Dirigent protein pDIR19 (Fragment) OS=Pic...    45   0.003
tr|Q9SDQ7|Q9SDQ7_TSUHE Dirigent-like protein OS=Tsuga heterophyl...    45   0.004

>tr|Q9SDQ9|Q9SDQ9_THUPL Dirigent protein OS=Thuja plicata GN=psd_Tp7
           PE=2 SV=1
          Length = 192

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 35/102 (34%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQP---NVT-WTNTYAFGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    NA N TS     P   N+T  T  Y FG  S F+DP+T      
Sbjct: 41  NLVLYFHDIIYNGK--NAGNATSTLVAAPQGANLTIMTGNYHFGDLSVFDDPITVDNNLH 98

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S  +G A GF+  + K  ++ +  FT  +   D+KGTI   G
Sbjct: 99  SPPVGRAQGFYFYDMKNTFSAWLGFTFVLNSTDYKGTITFGG 140


>tr|B2WS85|B2WS85_9BRAS Disease resistance-responsive family protein
           OS=Capsella rubella GN=6J23.5 PE=4 SV=1
          Length = 187

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 30/97 (30%), Positives = 47/97 (48%)
 Frame = +1

Query: 352 FTFYLHNTVYNPAVDNANNFTSVYGVQPNVTWTNTYAFGTTSTFEDPLTSGPATDSQQIG 531
           F+FY H+ +Y+   DN  N TS   V P       + FG    F+DP+T      S+ + 
Sbjct: 43  FSFYFHDILYDG--DNVANATSAAIVSP--PGLGNFKFGKFVIFDDPITMDKNYLSEPVA 98

Query: 532 VAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
            A GF+  + K+ +  +  +T       HKGT++I G
Sbjct: 99  RAQGFYFYDMKMDFNAWFCYTLVFNSTQHKGTLNIMG 135


>tr|Q9SDQ8|Q9SDQ8_THUPL Dirigent-like protein OS=Thuja plicata
           GN=psd_Tp8 PE=2 SV=1
          Length = 192

 Score = 51.2 bits (121), Expect = 5e-05
 Identities = 34/102 (33%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQP---NVT-WTNTYAFGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    NA N TS     P   N+T  T  Y FG  + F+DP+T      
Sbjct: 41  NLVLYFHDIIYNGK--NAGNATSTLVAAPQGANLTIMTGNYHFGDLAVFDDPITVDNNLH 98

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S  +G A GF+  + K  ++ +  FT  +   D+KGTI   G
Sbjct: 99  SPPVGRAQGFYFYDMKNTFSAWLGFTFVLNSTDYKGTITFGG 140


>tr|Q9SYU1|Q9SYU1_PEA Pathogenesis-related protein OS=Pisum sativum
           GN=DRR206-c PE=4 SV=1
          Length = 184

 Score = 50.8 bits (120), Expect = 7e-05
 Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQPNVTWTNTYA----FGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    NA N TS     P        A    FG    F+DP+T   +  
Sbjct: 33  NLVLYFHDILYNGK--NAANATSAIVAAPEGVSLTKLAPQSHFGNIIVFDDPITLSHSLS 90

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S+Q+G A GF+  ++K  YT +  FT  +    H+GTI   G
Sbjct: 91  SKQVGRAQGFYIYDTKNTYTSWLSFTFVLNSTHHQGTITFAG 132


>tr|Q9SDR1|Q9SDR1_THUPL Dirigent-like protein OS=Thuja plicata
           GN=psd_Tp5 PE=2 SV=1
          Length = 190

 Score = 50.4 bits (119), Expect = 9e-05
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQP---NVT-WTNTYAFGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    NA N TS     P   N+T  T    FG  + F+DP+T      
Sbjct: 39  NLVLYFHDIIYNGK--NAENATSALVAAPEGANLTIMTGNNHFGNLAVFDDPITLDNNLH 96

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S  +G A GF+  + K  ++ +  FT  +   DHKGTI   G
Sbjct: 97  SPPVGRAQGFYFYDMKNTFSAWLGFTFVLNSTDHKGTITFNG 138


>tr|Q9SDR0|Q9SDR0_THUPL Dirigent-like protein OS=Thuja plicata
           GN=psd_Tp6 PE=2 SV=1
          Length = 190

 Score = 50.4 bits (119), Expect = 9e-05
 Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQP---NVT-WTNTYAFGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    NA N TS     P   N+T  T    FG  + F+DP+T      
Sbjct: 39  NLVLYFHDIIYNGK--NAENATSALVAAPEGANLTIMTGNNHFGNLAVFDDPITLDNNLH 96

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S  +G A GF+  + K  ++ +  FT  +   DHKGTI   G
Sbjct: 97  SPPVGRAQGFYFYDMKNTFSAWLGFTFVLNSTDHKGTITFNG 138


>tr|Q9SDR5|Q9SDR5_THUPL Dirigent-like protein OS=Thuja plicata
           GN=psd_Tp1 PE=2 SV=1
          Length = 189

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 4/102 (3%)
 Frame = +1

Query: 349 SFTFYLHNTVYNPAVDNANNFTSVYGVQPN----VTWTNTYAFGTTSTFEDPLTSGPATD 516
           +   Y H+ +YN    N +N T+     P      T+   + FG    F+DP+T      
Sbjct: 38  NLVLYFHDILYNGK--NIHNATAALVAAPAWGNLTTFAEPFKFGDVVVFDDPITLDNNLH 95

Query: 517 SQQIGVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           S  +G A GF+  N K  Y  +  FT  +   D+KGTI   G
Sbjct: 96  SPPVGRAQGFYLYNMKTTYNAWLGFTFVLNSTDYKGTITFNG 137


>tr|Q9SDR2|Q9SDR2_THUPL Dirigent-like protein OS=Thuja plicata
           GN=psd_Tp4 PE=2 SV=1
          Length = 192

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
 Frame = +1

Query: 361 YLHNTVYNPAVDNANNFTSVYGVQP---NVT-WTNTYAFGTTSTFEDPLTSGPATDSQQI 528
           Y H+ +YN    NA+N TS     P   N+T  T    FG  + F+DP+T      S  +
Sbjct: 45  YFHDILYNGK--NAHNATSALVAAPEGANLTIMTGNNHFGNIAVFDDPITLDNNLHSPSV 102

Query: 529 GVAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
           G A GF+  + K  +  +  FT  +   DHKGTI   G
Sbjct: 103 GRAQGFYFYDMKDTFNAWLGFTFVLNSTDHKGTITFNG 140


>tr|A8IXC9|A8IXC9_BRACM Disease resistance response protein
           OS=Brassica campestris PE=2 SV=1
          Length = 187

 Score = 49.7 bits (117), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 46/97 (47%)
 Frame = +1

Query: 352 FTFYLHNTVYNPAVDNANNFTSVYGVQPNVTWTNTYAFGTTSTFEDPLTSGPATDSQQIG 531
           F+FY H+ +Y+   DN  N TS   V P       + FG    F+ P+T      S+ + 
Sbjct: 43  FSFYFHDILYDG--DNVANATSAAIVSP--PGLGNFKFGKFVIFDGPITMDKNYLSEPVA 98

Query: 532 VAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFG 642
            A GF+  + K  +  +  FT      +HKGT++I G
Sbjct: 99  RAQGFYFYDMKTDFNSWFSFTLVFNSTEHKGTLNIMG 135


>tr|Q9T017|Q9T017_ARATH Putative disease resistance response protein
           (At4g11190) OS=Arabidopsis thaliana GN=AT4g11190 PE=2
           SV=1
          Length = 184

 Score = 48.9 bits (115), Expect = 3e-04
 Identities = 29/98 (29%), Positives = 46/98 (46%)
 Frame = +1

Query: 352 FTFYLHNTVYNPAVDNANNFTSVYGVQPNVTWTNTYAFGTTSTFEDPLTSGPATDSQQIG 531
           F FYLHN  Y+   DN +N TS   V P       ++FG     ++P+T      S+Q+ 
Sbjct: 39  FVFYLHNVAYDG--DNTDNATSAAIVNP--LGLGDFSFGKFVIMDNPVTMDQNMLSEQVA 94

Query: 532 VAHGFWQLNSKVGYTLFHIFTANITEGDHKGTIDIFGQ 645
              GF+  + K  Y  +  ++       HKG ++I G+
Sbjct: 95  RVQGFFFYHGKTKYDTWLSWSVVFNSTQHKGALNIMGE 132