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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962274
Clone id TST39A01NGRL0013_G20
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_G20. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGGGACGAGCGATCGGCAGGCCA
CGATGTCGTCGAAGCAGGGTGGTAAAGCCAAACCCTTGAAGGCTCCCAAGGCAGATAAAA
AAGAGTACGATGAGAACGAGAAGGCGTTTCTACAGAAAAAAAAGGAGGAAGAGAAGGCTA
TGAAAGATCTGAAGGCCAAAGCAGCTGGCAAGGGCACCTTTGCCGGGTCAGGCTTGAAGA
AAAGTGGCAGTGGTGGAAAGAAATGATATTACTAGCAGGCACTTGTGAAAGCACTCCTTT
TTTTGTGGCATGTATTATGCACACAGACTGGGATGAAGCGTATAAAGTTTTTAGCCAGTT
TATCATGAGCCCTCTCTTATTAGAGGCCAAGGTACTAGGATGAAGTGGATGTTCTGTTGA
CCTTGGATGTAATCATGCCGATGCTTGTGAATAAGTGGTCC
■■Homology search results ■■ -
sp_hit_id Q05AK9
Definition sp|Q05AK9|CCD72_DANRE Coiled-coil domain-containing protein 72 OS=Danio rerio
Align length 23
Score (bit) 32.3
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962274|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_G20, 5'
         (461 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05AK9|CCD72_DANRE Coiled-coil domain-containing protein 72 O...    32   1.0  
sp|Q8K003|CCD72_MOUSE Coiled-coil domain-containing protein 72 O...    32   1.3  
sp|Q9Y2S6|CCD72_HUMAN Coiled-coil domain-containing protein 72 O...    32   1.3  
sp|A1A4Q4|CCD72_BOVIN Coiled-coil domain-containing protein 72 O...    32   1.3  
sp|Q1HRV4|CCD72_AEDAE Coiled-coil domain-containing protein 72 h...    29   8.5  

>sp|Q05AK9|CCD72_DANRE Coiled-coil domain-containing protein 72
           OS=Danio rerio GN=ccdc72 PE=2 SV=1
          Length = 64

 Score = 32.3 bits (72), Expect = 1.0
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           E DE+E AF QK+KE++KAM+ L
Sbjct: 21  EMDEDEMAFKQKQKEDQKAMEQL 43


>sp|Q8K003|CCD72_MOUSE Coiled-coil domain-containing protein 72
           OS=Mus musculus GN=Ccdc72 PE=2 SV=1
          Length = 64

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           E DE +KAF QK+KEE+K +++L
Sbjct: 21  EMDEEDKAFKQKQKEEQKKLEEL 43


>sp|Q9Y2S6|CCD72_HUMAN Coiled-coil domain-containing protein 72
           OS=Homo sapiens GN=CCDC72 PE=1 SV=1
          Length = 64

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           E DE +KAF QK+KEE+K +++L
Sbjct: 21  EMDEEDKAFKQKQKEEQKKLEEL 43


>sp|A1A4Q4|CCD72_BOVIN Coiled-coil domain-containing protein 72
           OS=Bos taurus GN=CCDC72 PE=3 SV=1
          Length = 64

 Score = 32.0 bits (71), Expect = 1.3
 Identities = 13/23 (56%), Positives = 19/23 (82%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           E DE +KAF QK+KEE+K +++L
Sbjct: 21  EMDEEDKAFKQKQKEEQKKLEEL 43


>sp|Q1HRV4|CCD72_AEDAE Coiled-coil domain-containing protein 72
           homolog OS=Aedes aegypti PE=3 SV=1
          Length = 64

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 12/21 (57%), Positives = 17/21 (80%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMK 185
           E DE + AF QK+KE++KAM+
Sbjct: 21  EMDEEDMAFKQKQKEQQKAME 41
tr_hit_id Q653G8
Definition tr|Q653G8|Q653G8_ORYSJ Putative uncharacterized protein P0623A10.17-1 (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 23
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962274|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_G20, 5'
         (461 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q653G8|Q653G8_ORYSJ Putative uncharacterized protein P0623A10...    39   0.13 
tr|B6UDE4|B6UDE4_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|B6SJ00|B6SJ00_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.13 
tr|A2YGD2|A2YGD2_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.13 
tr|B6T191|B6T191_MAIZE Putative uncharacterized protein OS=Zea m...    39   0.17 
tr|A9SYF1|A9SYF1_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.29 
tr|A7P7C0|A7P7C0_VITVI Chromosome chr9 scaffold_7, whole genome ...    38   0.29 
tr|Q5ZF89|Q5ZF89_PLAMJ Putative uncharacterized protein OS=Plant...    37   0.49 
tr|Q7S913|Q7S913_NEUCR Predicted protein OS=Neurospora crassa GN...    37   0.64 
tr|Q9XI42|Q9XI42_ARATH F9L1.21 protein (Putative uncharacterized...    35   1.4  
tr|Q9LW82|Q9LW82_ARATH Arabidopsis thaliana genomic DNA, chromos...    35   1.4  
tr|Q1EBS5|Q1EBS5_ARATH At3g16040 OS=Arabidopsis thaliana PE=4 SV=1     35   1.4  
tr|A9NWF5|A9NWF5_PICSI Putative uncharacterized protein OS=Picea...    35   1.4  
tr|A9NJV8|A9NJV8_PICSI Putative uncharacterized protein OS=Picea...    35   1.4  
tr|A9PAP3|A9PAP3_POPTR Putative uncharacterized protein OS=Popul...    34   3.2  
tr|Q8LCA9|Q8LCA9_ARATH Putative uncharacterized protein OS=Arabi...    33   5.4  

>tr|Q653G8|Q653G8_ORYSJ Putative uncharacterized protein
           P0623A10.17-1 (Putative uncharacterized protein)
           OS=Oryza sativa subsp. japonica GN=P0623A10.17-1 PE=4
           SV=1
          Length = 63

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A+LQKKK+EEKA+K+L
Sbjct: 20  EYDESDLAYLQKKKDEEKALKEL 42


>tr|B6UDE4|B6UDE4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 62

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A+LQKKK+EEKA+K+L
Sbjct: 20  EYDESDLAYLQKKKDEEKALKEL 42


>tr|B6SJ00|B6SJ00_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 62

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A+LQKKK+EEKA+K+L
Sbjct: 20  EYDESDLAYLQKKKDEEKALKEL 42


>tr|A2YGD2|A2YGD2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24233 PE=4 SV=1
          Length = 63

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/23 (69%), Positives = 22/23 (95%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A+LQKKK+EEKA+K+L
Sbjct: 20  EYDESDLAYLQKKKDEEKALKEL 42


>tr|B6T191|B6T191_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 62

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE + A+LQKKK+EEKA+K+L
Sbjct: 20  EYDETDLAYLQKKKDEEKALKEL 42


>tr|A9SYF1|A9SYF1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234487 PE=4 SV=1
          Length = 119

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A LQKKKEEEKA+K+L
Sbjct: 69  EYDESDLANLQKKKEEEKALKEL 91


>tr|A7P7C0|A7P7C0_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034400001
           PE=4 SV=1
          Length = 64

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 17/23 (73%), Positives = 21/23 (91%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE++ A LQKKKEEEKA+K+L
Sbjct: 21  EYDEDDLAKLQKKKEEEKALKEL 43


>tr|Q5ZF89|Q5ZF89_PLAMJ Putative uncharacterized protein OS=Plantago
           major PE=4 SV=1
          Length = 63

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/23 (69%), Positives = 21/23 (91%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE +KA +QKKK+EEKA+K+L
Sbjct: 21  EYDEIDKANIQKKKDEEKALKEL 43


>tr|Q7S913|Q7S913_NEUCR Predicted protein OS=Neurospora crassa
           GN=NCU07972 PE=4 SV=1
          Length = 68

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 16/23 (69%), Positives = 20/23 (86%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           E DE++KAFL+KK+ EEKA KDL
Sbjct: 23  ELDEDDKAFLEKKRAEEKARKDL 45


>tr|Q9XI42|Q9XI42_ARATH F9L1.21 protein (Putative uncharacterized
           protein At1g15270) (Putative uncharacterized protein)
           (Putative uncharacterized protein At1g15270; F9L1.21)
           OS=Arabidopsis thaliana GN=At1g15270/F9L1.21 PE=2 SV=1
          Length = 64

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 123 EYDENEKAFLQKKKEEEKAMKDL 191
           EYDE + A +QKKK+EEKA+K+L
Sbjct: 21  EYDETDLANIQKKKDEEKALKEL 43