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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962296
Clone id TST39A01NGRL0013_H21
Library
Length 646
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_H21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGGCTCTGCTTATCGCTTAGACTTGCGCAGGCAGAGCTCTCTGCTGCTGCAAGTCTAGGC
TAAGCTTAGCTGGGCTCTCCCCTCGCTCTTCCAGGAGCCTGCTCTCTCGCCTTTCTCCGA
TCTTGTGCCCTGTCGCGGTTTTTCTTTGTGCACCATTCTCAGGAATGGCTGCAATGGCAA
AGTCTTGTCTTGACAAGACAACTGCTTTACAGGCCTCACCGTTTAGGCAGGATGGAGTTG
CCTCCTCAGCGAAGTGTGGACAACATGCAATTCTAAGCATGCCCCTCCACCAGAGTAAAA
CCAGAAAGTTGAGACCTGCGAGTTTTGATAAGTTGCCAACACTAAGTTTGCGCAAGGGGA
AGGCTGTTTTGCCACATGGAACATGGAGGACTATATCAGCAATTGCGGCTCCTATCGCAC
CGCCCCTGAGTGATCCTTCGTACAGAGCAAAGCTGGCGGAAGAGTATGGCTTTTCTCAAA
TTGGTGAGCCCGTTCCTCCAAATGTGACACTGAAGAATGTGATGGACTCTTTGCCTCCAG
AGGTGTTTGAGATTAACAACATGAAGGCATGGAGGACTGTAGCTATCACGGTTACTGCCT
ATGCAGCAGGGCTTTTTATGATTGCAAAGGCACCCTGGTATCTTCT
■■Homology search results ■■ -
sp_hit_id P48627
Definition sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus
Align length 67
Score (bit) 102.0
E-value 1.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962296|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_H21, 5'
         (646 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplast...   102   1e-21
sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplast...   100   1e-20
sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplast...    98   4e-20
sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplast...    96   1e-19
sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp. ...    41   0.005
sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensi...    40   0.014
sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43 OS=Arabid...    31   6.4  

>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic
           OS=Brassica napus PE=2 SV=1
          Length = 443

 Score =  102 bits (255), Expect = 1e-21
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 140 AKAPWYL 146


>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic
           OS=Glycine max PE=2 SV=1
          Length = 424

 Score = 99.8 bits (247), Expect = 1e-20
 Identities = 44/68 (64%), Positives = 60/68 (88%)
 Frame = +3

Query: 441 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 620
           YR +LAE+YGF Q+GEP+  +VTLK+V++ LP EVFEI+++KAW++V I+VT+YA GLFM
Sbjct: 78  YRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVFEIDDVKAWKSVLISVTSYALGLFM 137

Query: 621 IAKAPWYL 644
           I+KAPWYL
Sbjct: 138 ISKAPWYL 145


>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic
           OS=Spinacia oleracea GN=FAD6 PE=1 SV=1
          Length = 447

 Score = 97.8 bits (242), Expect = 4e-20
 Identities = 43/65 (66%), Positives = 56/65 (86%)
 Frame = +3

Query: 450 KLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAK 629
           +LAE YGF QIGEP+P +VT+++++ SLP +VFEIN+ KAW TV I+VT+YA G+FMIAK
Sbjct: 87  QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVFEINDTKAWGTVLISVTSYALGIFMIAK 146

Query: 630 APWYL 644
           APWYL
Sbjct: 147 APWYL 151


>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic
           OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2
          Length = 448

 Score = 96.3 bits (238), Expect = 1e-19
 Identities = 44/67 (65%), Positives = 57/67 (85%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KA ++V I+VT+Y  GLFMI
Sbjct: 85  REQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVFEIDDLKALKSVLISVTSYTLGLFMI 144

Query: 624 AKAPWYL 644
           AK+PWYL
Sbjct: 145 AKSPWYL 151


>sp|P20388|DESA_SYNY3 Fatty acid desaturase OS=Synechocystis sp.
           (strain PCC 6803) GN=desA PE=3 SV=1
          Length = 351

 Score = 41.2 bits (95), Expect = 0.005
 Identities = 19/47 (40%), Positives = 28/47 (59%)
 Frame = +3

Query: 501 NVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPWY 641
           ++ L++++ +LP E FE    KAW +V IT+ A A G   I   PWY
Sbjct: 23  DLKLQDIIKTLPKECFEKKASKAWASVLITLGAIAVGYLGIIYLPWY 69


>sp|Q54794|DESA_SPIPL Fatty acid desaturase OS=Spirulina platensis
           GN=desA PE=3 SV=1
          Length = 351

 Score = 39.7 bits (91), Expect = 0.014
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 492 VPPNVTLK-NVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMIAKAPWYL 644
           VP ++ L+ +++++LP  VF  +  KAW TV I V     G   IA APW+L
Sbjct: 18  VPSDLPLEEDIINTLPSGVFVQDRYKAWMTVIINVVMVGLGWLGIAIAPWFL 69


>sp|Q84WP6|NAC43_ARATH NAC domain-containing protein 43
           OS=Arabidopsis thaliana GN=EMB2301 PE=2 SV=2
          Length = 365

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 204 QLSCQDKTLPLQPFLRMVHKEKPRQ-GTRSEKGERAGSWKSEGRAQLSLA*TCSSRELCL 28
           Q  C+  T P   +    HK+K    GTR+ +   AG WK+ GR ++  +   + R + +
Sbjct: 62  QEMCKIGTTPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKIIYS---NGRRIGM 118

Query: 27  RKS 19
           RK+
Sbjct: 119 RKT 121
tr_hit_id A9TJT1
Definition tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 67
Score (bit) 109.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962296|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_H21, 5'
         (646 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella paten...   109   2e-22
tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea...   105   2e-21
tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Popul...   105   2e-21
tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2...   102   2e-20
tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4...   102   2e-20
tr|Q6DT48|Q6DT48_ARALP AT4G30950 (Fragment) OS=Arabidopsis lyrat...   102   2e-20
tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplas...   102   3e-20
tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase OS=...   101   4e-20
tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase...   100   8e-20
tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase, c...    99   2e-19
tr|B8BB37|B8BB37_ORYSI Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|A3BTJ3|A3BTJ3_ORYSJ Putative uncharacterized protein OS=Oryza...    99   2e-19
tr|B6TGK8|B6TGK8_MAIZE Putative uncharacterized protein OS=Zea m...    98   5e-19
tr|Q5U9G0|Q5U9G0_OLEEU Chloroplast fatty acid desaturase 6 OS=Ol...    94   5e-18
tr|Q9AXY4|Q9AXY4_BRAOL Omega 6 reductase (Fragment) OS=Brassica ...    89   3e-16
tr|A3QQP5|A3QQP5_MESVI Chloroplast omega-6 fatty acid desaturase...    86   2e-15
tr|Q9AXY2|Q9AXY2_BRANA Omega 6 reductase (Fragment) OS=Brassica ...    82   2e-14
tr|Q9AXY3|Q9AXY3_BRACM Omega 6 reductase (Fragment) OS=Brassica ...    80   8e-14
tr|Q9AXY5|Q9AXY5_BRANA Omega 6 reductase (Fragment) OS=Brassica ...    80   1e-13
tr|Q9SBU4|Q9SBU4_CHLSW Chloroplast w6 desaturase OS=Chlamydomona...    75   3e-12
tr|Q9C600|Q9C600_ARATH Omega 6 reductase (Fragment) OS=Arabidops...    75   4e-12
tr|O48663|O48663_CHLRE Chloroplast w6 desaturase (Omega-6-FAD, c...    67   9e-10
tr|A9SI95|A9SI95_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   8e-09
tr|Q9ZSV8|Q9ZSV8_ACEAT Putative chloroplast desaturase (Fragment...    57   1e-06
tr|A9SCR5|A9SCR5_PHYPA Predicted protein (Fragment) OS=Physcomit...    56   2e-06
tr|Q55231|Q55231_SYNP2 Delta 12 desaturase OS=Synechococcus sp. ...    53   1e-05
tr|A7R2X6|A7R2X6_VITVI Chromosome undetermined scaffold_462, who...    53   2e-05
tr|B0C0E1|B0C0E1_ACAM1 Fatty acid desaturase (Delta(12) desatura...    49   3e-04
tr|B1WXI5|B1WXI5_CYAA5 Fatty acid desaturase OS=Cyanothece (stra...    48   4e-04
tr|A0ZMU5|A0ZMU5_NODSP Fatty acid desaturase OS=Nodularia spumig...    47   8e-04

>tr|A9TJT1|A9TJT1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222981 PE=4 SV=1
          Length = 454

 Score =  109 bits (272), Expect = 2e-22
 Identities = 49/67 (73%), Positives = 60/67 (89%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAEEYGF+QIGEPVP +VTLK V+DS P EVFEIN++KAW+T+AI+V +Y+ GLFMI
Sbjct: 92  RQRLAEEYGFTQIGEPVPADVTLKKVIDSFPSEVFEINDLKAWKTIAISVASYSLGLFMI 151

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 152 AKAPWYL 158


>tr|A9NV95|A9NV95_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 460

 Score =  105 bits (263), Expect = 2e-21
 Identities = 47/67 (70%), Positives = 60/67 (89%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +++E+YGF+QIGEPVP N+ LKNV+DSLP EVFEI++ KAW+TVAI+V AY+ GLF+I
Sbjct: 98  RNRISEKYGFTQIGEPVPDNIILKNVIDSLPQEVFEIDDTKAWKTVAISVAAYSLGLFLI 157

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 158 AKAPWYL 164


>tr|A9PGN3|A9PGN3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 444

 Score =  105 bits (262), Expect = 2e-21
 Identities = 46/68 (67%), Positives = 60/68 (88%)
 Frame = +3

Query: 441 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 620
           YR +LAE YGF +IGEP+P N+TLK VMD+LP +VFEI++MKAW++V ++VT+YA GLFM
Sbjct: 81  YRKQLAESYGFRKIGEPLPDNITLKGVMDTLPKKVFEIDDMKAWKSVLVSVTSYAFGLFM 140

Query: 621 IAKAPWYL 644
           I+KAPWYL
Sbjct: 141 ISKAPWYL 148


>tr|Q6DUV9|Q6DUV9_BRANA Omega-6 desaturase OS=Brassica napus PE=2
           SV=1
          Length = 443

 Score =  102 bits (255), Expect = 2e-20
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 140 AKAPWYL 146


>tr|Q6DUV4|Q6DUV4_BRANA Omega-6 desaturase OS=Brassica napus PE=4
           SV=1
          Length = 443

 Score =  102 bits (254), Expect = 2e-20
 Identities = 46/67 (68%), Positives = 59/67 (88%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIG+ +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+YA GLFMI
Sbjct: 80  REQLAESYGFKQIGQNLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYALGLFMI 139

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 140 AKAPWYL 146


>tr|Q6DT48|Q6DT48_ARALP AT4G30950 (Fragment) OS=Arabidopsis lyrata
           subsp. petraea PE=4 SV=1
          Length = 203

 Score =  102 bits (254), Expect = 2e-20
 Identities = 46/67 (68%), Positives = 58/67 (86%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+Y  GLFMI
Sbjct: 50  REQLAESYGFKQIGENLPDNVTLKDIMDTLPKEVFEIDDLKAWKSVLISVTSYTLGLFMI 109

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 110 AKAPWYL 116


>tr|Q09GN7|Q09GN7_DESSO Omega-6 fatty acid desaturase (Chloroplast
           delta-12 fatty acid desaturase) OS=Descurainia sophia
           GN=FAD6 PE=2 SV=1
          Length = 447

 Score =  102 bits (253), Expect = 3e-20
 Identities = 46/67 (68%), Positives = 58/67 (86%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +LAE YGF QIGE +P NVTLK++MD+LP EVFEI+++KAW++V I+VT+Y  GLFMI
Sbjct: 84  REQLAESYGFRQIGEDLPDNVTLKDIMDTLPKEVFEIDDVKAWKSVLISVTSYTLGLFMI 143

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 144 AKAPWYL 150


>tr|A9UKE1|A9UKE1_OLEEU Plastidial delta-12 oleate desaturase
           OS=Olea europaea GN=FAD6 PE=2 SV=1
          Length = 443

 Score =  101 bits (251), Expect = 4e-20
 Identities = 44/67 (65%), Positives = 60/67 (89%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R +L+E YGF QIGEP+P NVTLK+++D+LP +VFEI+++KAW++V I+VT+YA G+FMI
Sbjct: 81  RKQLSENYGFRQIGEPLPDNVTLKDIVDTLPRKVFEIDDVKAWKSVLISVTSYALGIFMI 140

Query: 624 AKAPWYL 644
           AKAPWYL
Sbjct: 141 AKAPWYL 147


>tr|A7XZU9|A7XZU9_9ROSI Chloroplast omega-6 fatty acid desaturase
           OS=Jatropha curcas PE=2 SV=1
          Length = 440

 Score =  100 bits (249), Expect = 8e-20
 Identities = 42/68 (61%), Positives = 59/68 (86%)
 Frame = +3

Query: 441 YRAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFM 620
           YR +LAE YGF QIGEP+P N+TL+ ++D+LP +VFEI+++KAW++V ++VT+YA GL M
Sbjct: 77  YRKQLAESYGFRQIGEPLPENITLREIIDTLPKKVFEIDDVKAWKSVLVSVTSYALGLLM 136

Query: 621 IAKAPWYL 644
           I+KAPWYL
Sbjct: 137 ISKAPWYL 144


>tr|Q6Z9G4|Q6Z9G4_ORYSJ Putative Omega-6 fatty acid desaturase,
           chloroplast OS=Oryza sativa subsp. japonica
           GN=P0528B09.19 PE=4 SV=1
          Length = 414

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 43/67 (64%), Positives = 58/67 (86%)
 Frame = +3

Query: 444 RAKLAEEYGFSQIGEPVPPNVTLKNVMDSLPPEVFEINNMKAWRTVAITVTAYAAGLFMI 623
           R ++ E+YGF QIGE +P NVTLK+VMDSLP EVFEI+++K+W +V I+VT+YA G+F+I
Sbjct: 52  RKQMCEDYGFKQIGEQLPDNVTLKDVMDSLPKEVFEIDDLKSWTSVLISVTSYALGIFLI 111

Query: 624 AKAPWYL 644
           +KAPWYL
Sbjct: 112 SKAPWYL 118