DK962343 |
Clone id |
TST39A01NGRL0013_J21 |
Library |
TST39 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_J21. 5' end sequence. |
Accession |
DK962343 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL162Contig1 |
Sequence |
GGCGAACAAGCTGCTGAGCCGCCGCTCTTCCTTTCCTCTTATCTGTGTGTGCAGTGAAGA AGGCGATGGAGTACCATCCAGGCCCAGGTCGGAATCAGCTCTTTGTGCCAGGGCCCGTGA ATGTCCCCGAGCAAGTTCTGCGCGCCATGAACCGCAACAATGAAGACTACCGCTCCCCCG CCATGCCTACCCTCTCCAAGTCCGTTCTTGAGGATATCAAACGCATCTTCAAGACCACAA CAGCTACTTCCTTCATCATTCCCACCACAGGAACTGGTGCTTGGGAGAGTGCTCTAACCA ACACCCTGTCTCCAAGGGACAAAATCCTCACCTTCAGGCTGGGGCAATTCAGTCTTCTAT GGGTAGACCAGATGCAGCGGCTCAATTTTGATGTTGATGTGGTGGATGTGGAATGGGGTG CTGGTGTTGACCTCTCAGTGCTTCGAGCAAAGCTTCAGTCTGACACCAAACATGAAATTA AGGCTGTGTGCGTAGTTCACAATGAGACAGCAACAGGCGTTACCAATGATCTTGCTGGGA TTCGCAATGTCATAGATGCATGCCAGCATCCAGCTCTCTTTCTTGTGGATGGTGTATCAT CTATTTGTGCGCTAGACTTTCGAATGGATGAGTGGTGCATAGATGTTGCACTAACTGGTT C |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
198 |
Score (bit) |
280.0 |
E-value |
4.0e-75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962343|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_J21, 5' (661 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 280 4e-75 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 194 5e-49 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 176 1e-43 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 105 3e-22 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 86 2e-16 sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=... 84 5e-16 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 83 1e-15 sp|P43567|AGX1_YEAST Alanine--glyoxylate aminotransferase 1 OS=S... 75 4e-13 sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyo... 60 8e-09 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 56 1e-07 sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochon... 53 1e-06 sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo ... 51 5e-06 sp|P09139|SPYA_RAT Serine--pyruvate aminotransferase, mitochondr... 51 6e-06 sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto... 49 2e-05 sp|P41689|SPYA_FELCA Serine--pyruvate aminotransferase, mitochon... 49 2e-05 sp|P31029|SPYA_CALJA Serine--pyruvate aminotransferase, mitochon... 49 2e-05 sp|B1HPR6|PHNW_LYSSC 2-aminoethylphosphonate--pyruvate transamin... 44 6e-04 sp|A6L4N0|PHNW_BACV8 2-aminoethylphosphonate--pyruvate transamin... 44 8e-04 sp|Q6HLM0|PHNW_BACHK 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|Q63E45|PHNW_BACCZ 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|Q81TE0|PHNW_BACAN 2-aminoethylphosphonate--pyruvate transamin... 42 0.002 sp|A0RBE9|PHNW_BACAH 2-aminoethylphosphonate--pyruvate transamin... 42 0.003 sp|Q73BH8|PHNW_BACC1 2-aminoethylphosphonate--pyruvate transamin... 42 0.004 sp|Q8RLU1|PHNW_BACCE 2-aminoethylphosphonate--pyruvate transamin... 41 0.005 sp|Q9KLY7|PHNW_VIBCH 2-aminoethylphosphonate--pyruvate transamin... 41 0.006 sp|A5F049|PHNW_VIBC3 2-aminoethylphosphonate--pyruvate transamin... 41 0.006 sp|Q81G81|PHNW_BACCR 2-aminoethylphosphonate--pyruvate transamin... 40 0.011 sp|Q7MF44|PHNW_VIBVY 2-aminoethylphosphonate--pyruvate transamin... 39 0.019 sp|Q57SD3|PHNW_SALCH 2-aminoethylphosphonate--pyruvate transamin... 39 0.019 sp|A1SY89|PHNW_PSYIN 2-aminoethylphosphonate--pyruvate transamin... 39 0.019
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 280 bits (717), Expect = 4e-75 Identities = 130/198 (65%), Positives = 160/198 (80%) Frame = +3
Query: 66 MEYHPGPGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXX 245 M+Y GPGR+ LFVPGPVN+PE V+RAMNRNNEDYRSPA+P L+K++LED+K+IFK Sbjct: 1 MDYMYGPGRHHLFVPGPVNIPEPVIRAMNRNNEDYRSPAIPALTKTLLEDVKKIFKTTSG 60
Query: 246 XXXXXXXXXXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAG 425 GAWESALTNTLSP D+I++F +GQFSLLW+DQ +RLNF+VDVV+ +WG G Sbjct: 61 TPFLFPTTGTGAWESALTNTLSPGDRIVSFLIGQFSLLWIDQQKRLNFNVDVVESDWGQG 120
Query: 426 VDLSVLRAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSI 605 +L VL +KL D H IKA+C+VHNETATGVTND++ +R ++D +HPAL LVDGVSSI Sbjct: 121 ANLQVLASKLSQDENHTIKAICIVHNETATGVTNDISAVRTLLDHYKHPALLLVDGVSSI 180
Query: 606 CALDFRMDEWCIDVALTG 659 CALDFRMDEW +DVALTG Sbjct: 181 CALDFRMDEWGVDVALTG 198
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 194 bits (492), Expect = 5e-49 Identities = 95/187 (50%), Positives = 120/187 (64%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 LF+PGP N+P+ V AMN ED RSP P + + ED+K+ FK G Sbjct: 7 LFIPGPTNIPDAVRMAMNIPMEDMRSPEFPKFTLPLFEDLKKAFKMKDGRVFIFPSSGTG 66
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 AWESA+ NTL+ DK+L R GQFSLLWVD +RL V+V D EWG GV + L Sbjct: 67 AWESAVENTLATGDKVLMSRFGQFSLLWVDMCERLGLKVEVCDEEWGTGVPVEKYADILA 126
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 638 D HEIKAV V HNETATGV++D+AG+R +DA +HPAL +VDGVSS+ +LD RM EW Sbjct: 127 KDKNHEIKAVFVTHNETATGVSSDVAGVRKALDAAKHPALLMVDGVSSVGSLDMRMGEWG 186
Query: 639 IDVALTG 659 +D ++G Sbjct: 187 VDCCVSG 193
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 176 bits (445), Expect = 1e-43 Identities = 86/169 (50%), Positives = 109/169 (64%) Frame = +3
Query: 84 PGRNQLFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXX 263 PGRN LFVPGP N+P++V+RAM +ED+RS P+L+K + ED K++F Sbjct: 2 PGRNHLFVPGPTNIPDRVMRAMMVQSEDHRSVDFPSLTKPLFEDTKKVFGSTEGTIFLFP 61
Query: 264 XXXXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVL 443 G WESAL+NTL+ DK+L R GQFS LW+D QRL DV V + EWG G + Sbjct: 62 ASGTGIWESALSNTLARGDKVLAARFGQFSHLWIDMAQRLGLDVVVQEEEWGTGAKPEKI 121
Query: 444 RAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVD 590 L++D HEIKAV VVHNETATGVT+++ +R IDA HPAL VD Sbjct: 122 EEALRADKNHEIKAVMVVHNETATGVTSNIGAVRKAIDAAGHPALLFVD 170
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 105 bits (261), Expect = 3e-22 Identities = 63/187 (33%), Positives = 97/187 (51%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 L +PGP VPE L A+ ++ +R+ + V +++K + + G Sbjct: 7 LMIPGPTPVPEAALLALAKHPIGHRTSEFSNMMGEVTQNLKWLHQTESDVLMLNVSGT-G 65
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 A E+ + N LSP D+IL G+F WV+ Q +V+ + EWG +D KLQ Sbjct: 66 AVEAGMINFLSPGDRILVGSNGKFGERWVEVGQAFGLNVEAITAEWGQPLDPDKFAQKLQ 125
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 638 +DT EIKAV + H+ET+TGV NDL I + + AL +VD V+S+ A + +D Sbjct: 126 ADTNKEIKAVIITHSETSTGVINDLVAINSHVKE-HGQALIIVDAVTSLGAYNVPVDALG 184
Query: 639 IDVALTG 659 +DV +G Sbjct: 185 LDVVASG 191
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 85.5 bits (210), Expect = 2e-16 Identities = 55/187 (29%), Positives = 89/187 (47%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 L +PGP VPE VL ++ ++ +RS + ++ IK + + G Sbjct: 7 LMIPGPTPVPESVLLSLGKHPIGHRSGEFSQIMAAMTAGIKWLHQTQNEVLILAASGT-G 65
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 A E+ + N LS D+++ G+F W + + + WG ++ +A L Sbjct: 66 AMEAGIINFLSAGDRVVVGCNGKFGDRWGEVCDAYGLTTERISAPWGQPLNPDDFKAVLD 125
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 638 + KAV V H+ET+TGV NDL I + A AL +VD V+S+ A+ +DEW Sbjct: 126 GHRQKPSKAVIVTHSETSTGVINDLEAINRHVKA-HGQALIIVDAVTSLGAVSVPIDEWG 184
Query: 639 IDVALTG 659 +DV +G Sbjct: 185 LDVVGSG 191
>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1 Length = 385
Score = 84.3 bits (207), Expect = 5e-16 Identities = 57/187 (30%), Positives = 93/187 (49%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 L +PGP VP +VL AM +R+ L + +E +K++F Sbjct: 10 LMIPGPTMVPPEVLNAMALPVIGHRTKDYSNLLEDTIEKLKKVF-ITENDTFLITGSGTA 68
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 A + A++N + DK+L G F + + ++ + +DVEWG + ++ L Sbjct: 69 AMDMAISNIIKRGDKVLNIVTGNFGERFANIVKAYKGEAIRLDVEWGDMAEPEAVKEIL- 127
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 638 D +IKAV VVHNET+TG N + I V+ + AL++VD VSS+ +D++ Sbjct: 128 -DKYDDIKAVTVVHNETSTGARNPIKEIGEVVK--DYDALYIVDTVSSLGGDYVNVDKFH 184
Query: 639 IDVALTG 659 ID+ +TG Sbjct: 185 IDICVTG 191
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 83.2 bits (204), Expect = 1e-15 Identities = 54/188 (28%), Positives = 91/188 (48%), Gaps = 1/188 (0%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 + PGPV V +VLR M+ PA + +E ++ +F+ Sbjct: 14 IMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRA 73
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 E+ L + + P D +L G+F L + +R +V +++ EWG D + +++ Sbjct: 74 GIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWGTVFDPEDIIREIK 133
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQ-HPALFLVDGVSSICALDFRMDEW 635 K + K V +VH ET+TG + L I +AC+ ALF+VD V++I + ++DEW Sbjct: 134 ---KVKPKIVAMVHGETSTGRIHPLKAIG---EACRTEDALFIVDAVATIGGCEVKVDEW 187
Query: 636 CIDVALTG 659 ID A+ G Sbjct: 188 KIDAAIGG 195
>sp|P43567|AGX1_YEAST Alanine--glyoxylate aminotransferase 1 OS=Saccharomyces cerevisiae GN=AGX1 PE=1 SV=1 Length = 385
Score = 74.7 bits (182), Expect = 4e-13 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 7/193 (3%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 L +PGP+ + V +A++ + + SP ++ + VL++ + +FK Sbjct: 8 LLIPGPIILSGAVQKALDVPSLGHTSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGS 67
Query: 279 A---WESALTNTL---SPRDKILTFRLGQFSLLWVDQMQRLNFDVDVV-DVEWGAGVDLS 437 W+ +N + +P +L G FS + D ++ VDVV ++ G V L Sbjct: 68 GTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGAQVDVVRPLKIGESVPLE 127
Query: 438 VLRAKLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALD 617 ++ KL +++ AV V H +T+T V +DL I I F+VD V SI + Sbjct: 128 LITEKL---SQNSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE 184
Query: 618 FRMDEWCIDVALT 656 F DEW +D ALT Sbjct: 185 FEFDEWGVDFALT 197
>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 Length = 407
Score = 60.5 bits (145), Expect = 8e-09 Identities = 43/187 (22%), Positives = 83/187 (44%) Frame = +3
Query: 99 LFVPGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXXXXG 278 L PGP N+ +V + + + Y + + +E ++ +F+ Sbjct: 21 LLGPGPSNLHPRVNQQLISSMVGYTDASYYKVMDETMELMRYLFQTDNHFTIPISGAGTA 80
Query: 279 AWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRAKLQ 458 A E+ ++N + P DK++ G FS R ++ VD +WG L + + L Sbjct: 81 AMETCVSNLIEPGDKVVCLVSGFFSDRIYQMAVRYGGNILKVDKQWGQWFALEEIESAL- 139
Query: 459 SDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMDEWC 638 +H+ + +V ET+TGV + G+ + ++ L +VD V+++ + +D+W Sbjct: 140 --VQHKPSLLTLVFGETSTGVKQQMEGVGELCK--KYNCLLMVDCVAALGGVPVFVDDWK 195
Query: 639 IDVALTG 659 ID TG Sbjct: 196 IDACYTG 202
>sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo sapiens GN=AGXT PE=1 SV=1 Length = 392
Score = 56.2 bits (134), Expect = 1e-07 Identities = 50/190 (26%), Positives = 80/190 (42%), Gaps = 1/190 (0%) Frame = +3
Query: 93 NQLFV-PGPVNVPEQVLRAMNRNNEDYRSPAMPTLSKSVLEDIKRIFKXXXXXXXXXXXX 269 NQL + PGP N+P +++ A S M + + E I+ +F+ Sbjct: 22 NQLLLGPGPSNLPPRIMAAGGLQMIGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGS 81
Query: 270 XXGAWESALTNTLSPRDKILTFRLGQFSLLWVDQMQRLNFDVDVVDVEWGAGVDLSVLRA 449 A E+AL N L P D L G + VD +R+ V + + G L + Sbjct: 82 GHCALEAALVNVLEPGDSFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEE 141
Query: 450 KLQSDTKHEIKAVCVVHNETATGVTNDLAGIRNVIDACQHPALFLVDGVSSICALDFRMD 629 L +H+ + + H E++TGV L G + ++ L LVD V+S+ MD Sbjct: 142 GL---AQHKPVLLFLTHGESSTGVLQPLDGFGELCH--RYKCLLLVDSVASLGGTPLYMD 196
Query: 630 EWCIDVALTG 659 ID+ +G Sbjct: 197 RQGIDILYSG 206
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8LKC9 |
Definition |
tr|B8LKC9|B8LKC9_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
193 |
Score (bit) |
293.0 |
E-value |
6.0e-78 |
Report |
|