DK962361 |
Clone id |
TST39A01NGRL0013_K16 |
Library |
TST39 |
Length |
587 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_K16. 5' end sequence. |
Accession |
DK962361 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL553Contig1 |
Sequence |
GTTAGCATGGCTGCTCTTACCGCTTCTTCAGTCTCCACCACGGCTGCTCTGAAGCATGAA TCAAAGTCTGAGAAGGTAGAGAATCTCAAGAGTTCATCTTTTGTCCCTAGGCTCCCAGCA TCTAGAGTTTCTTGTGCTGCAAATGCCACTGTGAACAATGGTGCTCTCGGGGCTAGGGCG GTGATCACGCCATCCTTGGGCTCGGAAAAGCCCAACCGGACTCGAGCTACAACCAAGGAT CCCTCCTCCCCTGAGTTTCTTCCCATCCCTTCTTTTGAGGAGTGCTTTCCAAACAGCACC AAAGAAAGCAGGGAAATTGTGCATGAACCTACAGGTTCTGTTCTTCATGTACCATTTAGG CGAGTGCATCTGTCTGGTGGGGAACCCCCTTTTGATACTTATGACACCAGTGGACCGCAG AATTTGAATCCCCATTCAGGTCTTCCGAAACTCCGCAAGTCATGGATAGAAAGGAGAGAA AAGAGGGGGGACAAAAGGTGCACACAAATGCATTATGCTAAGCAAGGAACTGTAACTGAA GAGATGGTGTATTGTGCTGCTAGAGAGAACTTTGAGTCCAGACTTCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q04Y23 |
Definition |
sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) |
Align length |
78 |
Score (bit) |
63.2 |
E-value |
9.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962361|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_K16, 5' (587 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Lepto... 63 9e-10 sp|Q04VF1|THIC_LEPBJ Thiamine biosynthesis protein thiC OS=Lepto... 63 9e-10 sp|Q5YNS3|THIC_NOCFA Thiamine biosynthesis protein thiC OS=Nocar... 62 2e-09 sp|P66911|THIC_MYCTU Thiamine biosynthesis protein thiC OS=Mycob... 62 3e-09 sp|A5TZE9|THIC_MYCTA Thiamine biosynthesis protein thiC OS=Mycob... 62 3e-09 sp|A1KFP5|THIC_MYCBP Thiamine biosynthesis protein thiC OS=Mycob... 62 3e-09 sp|P66912|THIC_MYCBO Thiamine biosynthesis protein thiC OS=Mycob... 62 3e-09 sp|Q9ZBL0|THIC_MYCLE Thiamine biosynthesis protein thiC OS=Mycob... 61 4e-09 sp|Q8F7G5|THIC_LEPIN Thiamine biosynthesis protein thiC OS=Lepto... 59 1e-08 sp|Q72NZ8|THIC_LEPIC Thiamine biosynthesis protein thiC OS=Lepto... 59 1e-08 sp|Q5QUD0|THIC_IDILO Thiamine biosynthesis protein thiC OS=Idiom... 58 4e-08 sp|Q3ATM0|THIC_CHLCH Thiamine biosynthesis protein thiC OS=Chlor... 57 7e-08 sp|Q2L083|THIC_BORA1 Thiamine biosynthesis protein thiC OS=Borde... 57 7e-08 sp|Q83EJ0|THIC_COXBU Thiamine biosynthesis protein thiC OS=Coxie... 56 2e-07 sp|Q7N963|THIC_PHOLL Thiamine biosynthesis protein thiC OS=Photo... 55 2e-07 sp|A0PTS1|THIC_MYCUA Thiamine biosynthesis protein thiC OS=Mycob... 55 2e-07 sp|P61426|THIC_MYCPA Thiamine biosynthesis protein thiC OS=Mycob... 55 3e-07 sp|A0QLS0|THIC_MYCA1 Thiamine biosynthesis protein thiC OS=Mycob... 55 3e-07 sp|Q0BGQ9|THIC_BURCM Thiamine biosynthesis protein thiC OS=Burkh... 55 3e-07 sp|Q3B2V9|THIC_PELLD Thiamine biosynthesis protein thiC OS=Pelod... 54 4e-07 sp|A4JCZ0|THIC_BURVG Thiamine biosynthesis protein thiC OS=Burkh... 54 4e-07 sp|Q13WN4|THIC_BURXL Thiamine biosynthesis protein thiC OS=Burkh... 54 6e-07 sp|O34291|THIC_RHIET Thiamine biosynthesis protein thiC OS=Rhizo... 54 8e-07 sp|Q2K206|THIC_RHIEC Thiamine biosynthesis protein thiC OS=Rhizo... 54 8e-07 sp|Q63VF5|THIC_BURPS Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07 sp|A3N7W7|THIC_BURP6 Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07 sp|Q3JU20|THIC_BURP1 Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07 sp|A3NTK3|THIC_BURP0 Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07 sp|A1V2S9|THIC_BURMS Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07 sp|Q62FE9|THIC_BURMA Thiamine biosynthesis protein thiC OS=Burkh... 54 8e-07
>sp|Q04Y23|THIC_LEPBL Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=thiC PE=3 SV=1 Length = 511
Score = 63.2 bits (152), Expect = 9e-10 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Frame = +1
Query: 349 VPFRRVHLSGGEPPFDTYDTSGPQNLNPHS----GLPKLRKSWIERREKRGDKRCTQMHY 516 VP + + L+ G + +Y T G + S G+PK+RK WI R RGD +QM+Y Sbjct: 9 VPLKTIRLTDGTE-YQSYHTEGSLSDKKPSDYKNGIPKIRKEWIRTRLDRGDTNHSQMYY 67
Query: 517 AKQGTVTEEMVYCAAREN 570 AK+G +TEEM Y A REN Sbjct: 68 AKKGIITEEMRYVALREN 85
>sp|Q04VF1|THIC_LEPBJ Thiamine biosynthesis protein thiC OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=thiC PE=3 SV=1 Length = 511
Score = 63.2 bits (152), Expect = 9e-10 Identities = 34/78 (43%), Positives = 46/78 (58%), Gaps = 4/78 (5%) Frame = +1
Query: 349 VPFRRVHLSGGEPPFDTYDTSGPQNLNPHS----GLPKLRKSWIERREKRGDKRCTQMHY 516 VP + + L+ G + +Y T G + S G+PK+RK WI R RGD +QM+Y Sbjct: 9 VPLKTIRLTDGTE-YQSYHTEGSLSDKKPSDYKNGIPKIRKEWIRTRLDRGDTNHSQMYY 67
Query: 517 AKQGTVTEEMVYCAAREN 570 AK+G +TEEM Y A REN Sbjct: 68 AKKGIITEEMRYVALREN 85
>sp|Q5YNS3|THIC_NOCFA Thiamine biosynthesis protein thiC OS=Nocardia farcinica GN=thiC PE=3 SV=1 Length = 547
Score = 62.4 bits (150), Expect = 2e-09 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 5/86 (5%) Frame = +1
Query: 343 LHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRKSWIERREKRGDKRCTQ 507 L +P RR++L+ GE FD YDTSGP ++ +GLPKLR SW ++ G + TQ Sbjct: 32 LRIPVRRINLTNGET-FDVYDTSGPYTDENATIDLEAGLPKLRDSW-DKPTVAGPR--TQ 87
Query: 508 MHYAKQGTVTEEMVYCAARENFESRL 585 + +A+ G VT EM + AARE E L Sbjct: 88 LAWARAGIVTPEMRFIAAREGVEPEL 113
>sp|P66911|THIC_MYCTU Thiamine biosynthesis protein thiC OS=Mycobacterium tuberculosis GN=thiC PE=3 SV=1 Length = 547
Score = 61.6 bits (148), Expect = 3e-09 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Frame = +1
Query: 295 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 459 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGD-HFDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 460 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENFESRL 585 R R TQ+ A+ G +T EM + AARE+ + L Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAEL 109
>sp|A5TZE9|THIC_MYCTA Thiamine biosynthesis protein thiC OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=thiC PE=3 SV=1 Length = 547
Score = 61.6 bits (148), Expect = 3e-09 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Frame = +1
Query: 295 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 459 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGD-HFDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 460 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENFESRL 585 R R TQ+ A+ G +T EM + AARE+ + L Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAEL 109
>sp|A1KFP5|THIC_MYCBP Thiamine biosynthesis protein thiC OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=thiC PE=3 SV=1 Length = 547
Score = 61.6 bits (148), Expect = 3e-09 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Frame = +1
Query: 295 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 459 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGD-HFDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 460 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENFESRL 585 R R TQ+ A+ G +T EM + AARE+ + L Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAEL 109
>sp|P66912|THIC_MYCBO Thiamine biosynthesis protein thiC OS=Mycobacterium bovis GN=thiC PE=3 SV=1 Length = 547
Score = 61.6 bits (148), Expect = 3e-09 Identities = 42/102 (41%), Positives = 54/102 (52%), Gaps = 5/102 (4%) Frame = +1
Query: 295 STKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKLRK 459 S K REI +G+ L VPFRRVHLS G+ FD YDTSGP ++ +GLP Sbjct: 17 SAKAYREIEAPGSGATLQVPFRRVHLSTGD-HFDLYDTSGPYTDTDTVIDLTAGLP---- 71
Query: 460 SWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENFESRL 585 R R TQ+ A+ G +T EM + AARE+ + L Sbjct: 72 ----HRPGVVRDRGTQLQRARAGEITAEMAFIAAREDMSAEL 109
>sp|Q9ZBL0|THIC_MYCLE Thiamine biosynthesis protein thiC OS=Mycobacterium leprae GN=thiC PE=3 SV=1 Length = 547
Score = 61.2 bits (147), Expect = 4e-09 Identities = 43/104 (41%), Positives = 53/104 (50%), Gaps = 5/104 (4%) Frame = +1
Query: 289 PNSTKESREIVHEPTGSVLHVPFRRVHLSGGEPPFDTYDTSGPQN-----LNPHSGLPKL 453 P S+K RE+ + G L VPFRRVHLS G FD YDTSGP +N +GLP Sbjct: 19 PGSSKAYREVANPDGGPSLRVPFRRVHLSTG-AHFDLYDTSGPYTDPDAVINLTAGLPP- 76
Query: 454 RKSWIERREKRGDKRCTQMHYAKQGTVTEEMVYCAARENFESRL 585 R I R TQ+ A+ G +T EM + A RE + L Sbjct: 77 RPGVIR-------DRGTQLQRARAGEITAEMAFIADREGMPAEL 113
>sp|Q8F7G5|THIC_LEPIN Thiamine biosynthesis protein thiC OS=Leptospira interrogans GN=thiC PE=3 SV=1 Length = 495
Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Frame = +1
Query: 343 LHVPFRRVHLSGGEPPFDTYDT----SGPQNLNPHSGLPKLRKSWIERREKRGDKRCTQM 510 L +P++ + LS G + +Y T SG Q + +G+P RK WI++R + +QM Sbjct: 7 LQIPYKSIRLSDGTE-YQSYHTEGALSGKQPADYKNGIPAFRKEWIQKRFNHSNH--SQM 63
Query: 511 HYAKQGTVTEEMVYCAARENFE 576 ++AK+G +TEEM Y A REN E Sbjct: 64 YFAKKGIITEEMRYAAFRENME 85
>sp|Q72NZ8|THIC_LEPIC Thiamine biosynthesis protein thiC OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=thiC PE=3 SV=2 Length = 495
Score = 59.3 bits (142), Expect = 1e-08 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 4/82 (4%) Frame = +1
Query: 343 LHVPFRRVHLSGGEPPFDTYDT----SGPQNLNPHSGLPKLRKSWIERREKRGDKRCTQM 510 L +P++ + LS G + +Y T SG Q + +G+P RK WI++R + +QM Sbjct: 7 LQIPYKSIRLSDGTE-YQSYHTEGALSGKQPADYKNGIPAFRKEWIQKRFNHSNH--SQM 63
Query: 511 HYAKQGTVTEEMVYCAARENFE 576 ++AK+G +TEEM Y A REN E Sbjct: 64 YFAKKGIITEEMRYAAFRENME 85
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9PJ85 |
Definition |
tr|A9PJ85|A9PJ85_POPJC Putative uncharacterized protein OS=Populus jackii |
Align length |
154 |
Score (bit) |
189.0 |
E-value |
8.0e-47 |
Report |
|