DK962372 |
Clone id |
TST39A01NGRL0013_L04 |
Library |
TST39 |
Length |
622 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_L04. 5' end sequence. |
Accession |
DK962372 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL45Contig1 |
Sequence |
ATTAGGGTTTCGTGATAGTGGACAACCATGGTGTCCCTCAAGCTGCAGAAGCGCCTCGCG GCTAGCGTGCTGAAGTGTGGGAAGCGCAAGGTCTGGCTCGATCCCAATGAGGTCAACGAA ATCTCTATGGCCAATTCAAGGCAAAACATAAGAAAGCTGGTCAAGGATGGCTTTGTGATT CGGAAACCGACCAAGATTCACTCGCGGGCAAGAGCAAAGCGTGCTTTGGAGGCTAAAAGG AAAGGCCGTCATTCAGGATATGGTAAGAGGCGGGGTACTAGGGAGGCCAGGCTACCCTCT AAAGTTCTCTGGTTGAGGCGTATGCGAGTGCTTCGCCGGTTGCTGAGAAAGTACCGGGAG GCTAAGAAGATTGACAAGCATATGTACCATGATATGTATATGAAGGTCAAGGGTAACGTG TTCAAAAATAAGCGCGTGCTCATGGAGAGTATTCACAAGTCTAAAGCAGAGAAGGCTCGT GAGAAGACACTGTCTGATCAGTTTGAAGCCCGTAGAGCTAAGGGAAAAGCTAACAGGGAG CGAAAAAGTGCCAGGAGGGAAGAGCGCTTGGCACAGGGATTGAGTACTGAAGCAGCACCA GCCATCCCTGCAGCTGCCCCCG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49693 |
Definition |
sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana |
Align length |
184 |
Score (bit) |
273.0 |
E-value |
7.0e-73 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962372|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_L04, 5' (622 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis... 273 7e-73 sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis... 271 3e-72 sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis... 266 8e-71 sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila mel... 209 7e-54 sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19 OS=Xenopus laevis... 208 2e-53 sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicu... 208 2e-53 sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii G... 208 2e-53 sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus G... 208 2e-53 sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicu... 208 2e-53 sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens G... 208 2e-53 sp|Q3T0W9|RL19_BOVIN 60S ribosomal protein L19 OS=Bos taurus GN=... 208 2e-53 sp|Q6P5L3|RL19_DANRE 60S ribosomal protein L19 OS=Danio rerio GN... 203 7e-52 sp|Q90YU8|RL19_ICTPU 60S ribosomal protein L19 OS=Ictalurus punc... 202 1e-51 sp|O42699|RL19B_SCHPO 60S ribosomal protein L19-B OS=Schizosacch... 197 5e-50 sp|P05734|RL19A_SCHPO 60S ribosomal protein L19-A OS=Schizosacch... 196 8e-50 sp|P14329|RL19_DICDI 60S ribosomal protein L19 OS=Dictyostelium ... 194 3e-49 sp|O02639|RL19_CAEEL 60S ribosomal protein L19 OS=Caenorhabditis... 188 2e-47 sp|P05735|RL19_YEAST 60S ribosomal protein L19 OS=Saccharomyces ... 178 2e-44 sp|O59437|RL19_PYRHO 50S ribosomal protein L19e OS=Pyrococcus ho... 103 7e-22 sp|Q08066|RL19_MAIZE 60S ribosomal protein L19 (Fragment) OS=Zea... 103 9e-22 sp|Q9V1V3|RL19_PYRAB 50S ribosomal protein L19e OS=Pyrococcus ab... 102 1e-21 sp|Q8U016|RL19_PYRFU 50S ribosomal protein L19e OS=Pyrococcus fu... 100 8e-21 sp|O28372|RL19_ARCFU 50S ribosomal protein L19e OS=Archaeoglobus... 87 7e-17 sp|P54043|RL19_METJA 50S ribosomal protein L19e OS=Methanocaldoc... 85 3e-16 sp|O26129|RL19_METTH 50S ribosomal protein L19e OS=Methanobacter... 82 2e-15 sp|P14024|RL19_METVA 50S ribosomal protein L19e OS=Methanococcus... 80 6e-15 sp|P14119|RL19_HALMA 50S ribosomal protein L19e OS=Haloarcula ma... 65 3e-10 sp|Q9HPB6|RL19E_HALSA 50S ribosomal protein L19e OS=Halobacteriu... 65 4e-10 sp|O05639|RL19_SULAC 50S ribosomal protein L19e OS=Sulfolobus ac... 64 8e-10 sp|Q9YF93|RL19_AERPE 50S ribosomal protein L19e OS=Aeropyrum per... 62 2e-09
>sp|P49693|RL193_ARATH 60S ribosomal protein L19-3 OS=Arabidopsis thaliana GN=RPL19C PE=2 SV=3 Length = 208
Score = 273 bits (697), Expect = 7e-73 Identities = 140/184 (76%), Positives = 150/184 (81%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 MVSLKLQKRLA+SVLKCGKRKVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHS Sbjct: 1 MVSLKLQKRLASSVLKCGKRKVWLDPNEGSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRHSGYGKR+GTREARLP+KV E KKID+HMY Sbjct: 61 SRARQLNIAKRKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSARREER 567 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEA+RAK KA+RERK ARREER Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180
Query: 568 LAQG 579 LA+G Sbjct: 181 LAKG 184
>sp|Q9SRX2|RL191_ARATH 60S ribosomal protein L19-1 OS=Arabidopsis thaliana GN=RPL19A PE=2 SV=1 Length = 214
Score = 271 bits (692), Expect = 3e-72 Identities = 139/184 (75%), Positives = 149/184 (80%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 MVSLKLQKRLAASV+KCGK KVWLDPNE ++ISMANSRQNIRKLVKDGF+IRKPTKIHS Sbjct: 1 MVSLKLQKRLAASVMKCGKGKVWLDPNESSDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRHSGYGKR+GTREARLP+KV E KKIDKHMY Sbjct: 61 SRARKMKIAKMKGRHSGYGKRKGTREARLPTKVLWMRRMRVLRRLLKKYRETKKIDKHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSARREER 567 HDMYM+VKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEA+RAK KA+RERK ARREER Sbjct: 121 HDMYMRVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKHARREER 180
Query: 568 LAQG 579 LA+G Sbjct: 181 LAKG 184
>sp|Q9LUQ6|RL192_ARATH 60S ribosomal protein L19-2 OS=Arabidopsis thaliana GN=RPL19B PE=2 SV=1 Length = 209
Score = 266 bits (679), Expect = 8e-71 Identities = 135/184 (73%), Positives = 147/184 (79%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 MVSLK+QKRLAASV+KCGK KVWLDPNE +ISMANSRQNIRKLVKDGF+IRKPTKIHS Sbjct: 1 MVSLKIQKRLAASVMKCGKGKVWLDPNESGDISMANSRQNIRKLVKDGFIIRKPTKIHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRHSGYGKR+GTREARLP+K+ E+KKID+HMY Sbjct: 61 SRARALNEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRFLSKYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSARREER 567 HDMYMKVKGNVFKNKRVLMESIHK KAEKAREKTL+DQFEA+R K KA+RERK ARREER Sbjct: 121 HDMYMKVKGNVFKNKRVLMESIHKMKAEKAREKTLADQFEAKRIKNKASRERKFARREER 180
Query: 568 LAQG 579 LAQG Sbjct: 181 LAQG 184
>sp|P36241|RL19_DROME 60S ribosomal protein L19 OS=Drosophila melanogaster GN=RpL19 PE=1 SV=2 Length = 203
Score = 209 bits (533), Expect = 7e-54 Identities = 106/182 (58%), Positives = 128/182 (70%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M SLKLQKRLAASVL+CGK+KVWLDPNE+NEI+ NSRQNIRKL+KDG +I+KP +HS Sbjct: 1 MSSLKLQKRLAASVLRCGKKKVWLDPNEINEIANTNSRQNIRKLIKDGLIIKKPVVVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G+GKR+GT AR+P+K+ ++KKID+H+Y Sbjct: 61 YRVRKNTEARRKGRHCGFGKRKGTANARMPTKLLWMQRQRVLRRLLKKYRDSKKIDRHLY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSARREER 567 HD+YMK KGNVFKNKRVLME IHK KAEK R K L+DQ EARR K + R+ RREER Sbjct: 121 HDLYMKCKGNVFKNKRVLMEYIHKKKAEKQRSKMLADQAEARRQKVREARK----RREER 176
Query: 568 LA 573 +A Sbjct: 177 IA 178
>sp|Q7ZYS1|RL19_XENLA 60S ribosomal protein L19 OS=Xenopus laevis GN=rpl19 PE=2 SV=1 Length = 197
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKLVKDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLVKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P K+ E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKLSWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKSLSKE 191
>sp|P84100|RL19_RAT 60S ribosomal protein L19 OS=Rattus norvegicus GN=Rpl19 PE=1 SV=1 Length = 196
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P KV E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKTLSKE 191
>sp|Q5RB99|RL19_PONAB 60S ribosomal protein L19 OS=Pongo abelii GN=RPL19 PE=2 SV=1 Length = 196
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P KV E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKTLSKE 191
>sp|P84099|RL19_MOUSE 60S ribosomal protein L19 OS=Mus musculus GN=Rpl19 PE=2 SV=1 Length = 196
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P KV E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKTLSKE 191
>sp|Q8HXN9|RL19_MACFA 60S ribosomal protein L19 OS=Macaca fascicularis GN=RPL19 PE=2 SV=2 Length = 196
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P KV E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKTLSKE 191
>sp|P84098|RL19_HUMAN 60S ribosomal protein L19 OS=Homo sapiens GN=RPL19 PE=1 SV=1 Length = 196
Score = 208 bits (529), Expect = 2e-53 Identities = 106/191 (55%), Positives = 131/191 (68%), Gaps = 3/191 (1%) Frame = +1
Query: 28 MVSLKLQKRLAASVLKCGKRKVWLDPNEVNEISMANSRQNIRKLVKDGFVIRKPTKIHSX 207 M L+LQKRLA+SVL+CGK+KVWLDPNE NEI+ ANSRQ IRKL+KDG +IRKP +HS Sbjct: 1 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 60
Query: 208 XXXXXXXXXXXXGRHSGYGKRRGTREARLPSKVXXXXXXXXXXXXXXXXXEAKKIDKHMY 387 GRH G GKR+GT AR+P KV E+KKID+HMY Sbjct: 61 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 120
Query: 388 HDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEARRAKGKANRERKSAR---R 558 H +Y+KVKGNVFKNKR+LME IHK KA+KAR+K L+DQ EARR+K K R+R+ R + Sbjct: 121 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 180
Query: 559 EERLAQGLSTE 591 +E + + LS E Sbjct: 181 KEEIIKTLSKE 191
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S5S6 |
Definition |
tr|A9S5S6|A9S5S6_PHYPA Ribosomal protein L19 OS=Physcomitrella patens subsp. patens |
Align length |
186 |
Score (bit) |
281.0 |
E-value |
3.0e-74 |
Report |
|