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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962381
Clone id TST39A01NGRL0013_L13
Library
Length 253
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_L13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTAAGTGGTAGTCGACGAGCTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGTGGGAGA
GAGAGAGAGAGAGATGGCTTCCGATAAGGGCATAGTCGCACTGTTCCTGGTGCTCATGGT
CTCGTGTTGGTGGGACTGATGGGCGCCGCCGCGCAGCCTCCGCCTCCGGCTCTGCGGTGC
ACTCCCCTGATAGACCTTGTGCCGGGTTGCCAGGCTGTAACTCTCTTCCCCGCCCTTGCC
CGAGTGCTCGCCT
■■Homology search results ■■ -
sp_hit_id O61661
Definition sp|O61661|CHK1_DROME Serine/threonine-protein kinase grp OS=Drosophila melanogaster
Align length 48
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962381|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_L13, 5'
         (253 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O61661|CHK1_DROME Serine/threonine-protein kinase grp OS=Dros...    30   2.8  
sp|Q9UL59|ZN214_HUMAN Zinc finger protein 214 OS=Homo sapiens GN...    30   4.8  
sp|Q3T0N1|F125A_BOVIN Multivesicular body subunit 12A OS=Bos tau...    30   4.8  

>sp|O61661|CHK1_DROME Serine/threonine-protein kinase grp
           OS=Drosophila melanogaster GN=grp PE=1 SV=2
          Length = 512

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = -2

Query: 228 EESYSLATRHKVYQGSAPQSRRRRLRGGAHQSHQHETMSTRNSATMPL 85
           E SY L       +  +P+++R+RL+  AH S+  +   +RN  + P+
Sbjct: 287 ERSYDLVDSAAALEICSPKAKRQRLQSSAHLSNGLDDSISRNYCSQPM 334


>sp|Q9UL59|ZN214_HUMAN Zinc finger protein 214 OS=Homo sapiens
           GN=ZNF214 PE=2 SV=1
          Length = 606

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = -2

Query: 240 GKGGEESYSLATRHKVYQGSAPQSRRRRLRGGAHQSHQH 124
           GKG   S +L    +V+ G  P   R   +G  H SH H
Sbjct: 560 GKGFSHSSALRIHQRVHAGEKPYKCREYYKGFDHNSHLH 598


>sp|Q3T0N1|F125A_BOVIN Multivesicular body subunit 12A OS=Bos taurus
           GN=FAM125A PE=2 SV=1
          Length = 273

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 4/30 (13%)
 Frame = +1

Query: 106 PGAHGLVLVGLMGAAAQPPPP----ALRCT 183
           PGA+G+ L GL  ++A  PPP    A+ CT
Sbjct: 5   PGANGMPLAGLAWSSASAPPPRGFSAISCT 34
tr_hit_id B5HV36
Definition tr|B5HV36|B5HV36_9ACTO Sugar ABC transporter integral membrane protein OS=Streptomyces sviceus ATCC 29083
Align length 32
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962381|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_L13, 5'
         (253 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5HV36|B5HV36_9ACTO Sugar ABC transporter integral membrane p...    34   3.2  
tr|B6PV09|B6PV09_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B6PSZ3|B6PSZ3_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B6LJQ6|B6LJQ6_BRAFL Putative uncharacterized protein OS=Branc...    33   5.5  
tr|B1LVG3|B1LVG3_METRJ SMP-30/Gluconolaconase/LRE domain protein...    33   9.3  
tr|A6R0S3|A6R0S3_AJECN Putative uncharacterized protein OS=Ajell...    33   9.3  

>tr|B5HV36|B5HV36_9ACTO Sugar ABC transporter integral membrane
           protein OS=Streptomyces sviceus ATCC 29083 GN=SSEG_09146
           PE=4 SV=1
          Length = 427

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 92  IVALFLVLMVSCWWD*WAPPRSLRLRLCGALP 187
           +  L +VL +  WW  W  P  LRLR CG  P
Sbjct: 221 VTVLAVVLFIGSWWLLWRTPFGLRLRSCGENP 252


>tr|B6PV09|B6PV09_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_132993 PE=4 SV=1
          Length = 1197

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 252 GEH--SGKGGEESYSLATRHKVYQGSAPQSRRRRLR-GGAHQSHQHETMSTRNSATMPLS 82
           G H  SG+GG E  S + R +   G++P+S RR +R GG H S Q       +S +MP  
Sbjct: 24  GRHARSGRGGSERRS-SERRREEDGASPRSMRRHVRRGGRHDSRQ-----PSSSPSMPRL 77

Query: 81  EAI 73
            A+
Sbjct: 78  SAV 80


>tr|B6PSZ3|B6PSZ3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_110591 PE=4 SV=1
          Length = 676

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 252 GEH--SGKGGEESYSLATRHKVYQGSAPQSRRRRLR-GGAHQSHQHETMSTRNSATMPLS 82
           G H  SG+GG E  S + R +   G++P+S RR +R GG H S Q       +S +MP  
Sbjct: 125 GRHARSGRGGSERRS-SERRREEDGASPRSMRRHVRRGGRHDSRQ-----PSSSPSMPRL 178

Query: 81  EAI 73
            A+
Sbjct: 179 SAV 181


>tr|B6LJQ6|B6LJQ6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_71391 PE=4 SV=1
          Length = 366

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = -2

Query: 252 GEH--SGKGGEESYSLATRHKVYQGSAPQSRRRRLR-GGAHQSHQHETMSTRNSATMPLS 82
           G H  SG+GG E  S + R +   G++P+S RR +R GG H S Q       +S +MP  
Sbjct: 150 GRHARSGRGGSERRS-SERRREEDGASPRSMRRHVRRGGRHDSRQ-----PSSSPSMPRL 203

Query: 81  EAI 73
            A+
Sbjct: 204 SAV 206


>tr|B1LVG3|B1LVG3_METRJ SMP-30/Gluconolaconase/LRE domain protein
           OS=Methylobacterium radiotolerans (strain ATCC 27329 /
           DSM 1819 / JCM 2831) GN=Mrad2831_0597 PE=3 SV=1
          Length = 407

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +1

Query: 97  RTVPGAHGLVLVGLMGAAAQPPPPALRCTPLIDLVPGCQAVTLF 228
           RTV  A G + V    AAAQP PP+   +P  D  PG    T F
Sbjct: 23  RTVLAALGTLAVTAGDAAAQPAPPSTVTSPPRDFRPGAPPTTYF 66


>tr|A6R0S3|A6R0S3_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03230 PE=4 SV=1
          Length = 876

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
 Frame = -2

Query: 231 GEESYSLATRHKVYQGSAPQSRRRRLRG----------GAHQSHQHETMSTRNSATM 91
           G  S   ATR   YQG AP ++RRR+RG          GA  S Q +TM++   +T+
Sbjct: 458 GYNSVGSATR---YQGRAPPNKRRRVRGGGGSGLAPVRGASNSVQPDTMASAQVSTL 511