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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962387
Clone id TST39A01NGRL0013_L19
Library
Length 626
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_L19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCTCCTCTCCTCTCTCACCTGCTCCCTCATCTCCCTAGCAATGTCTATACGAGAAGCT
ATCCGCTTCCGCACCAAAGCTCAACAACTGGTATCAGAGCTTTGGGGAAAGGTCTTGTAG
GTATTCATGAGTTGAGGTATAAAGGCGGGTTTCCAAAGAAGTGGGGTTGGTCTGTGTCAT
ACCAGATACTACTAGAGTGAAGGGACTTCTTGGGAGCCATCATCAGCATGCACGGCTCCG
AGCTTCCAGGAGATCTCATTCATGGATTTAGCTATTGCCCGCTGAATGTTGCCAGCGAGA
AGGCTGTTGCAGCAGTGCTCGCTTGTGGTGCTCTCTTGTCTTCCCCCTCGATAATATAGC
CTCAATAGGGAGCTCGACAGGCCAAAGGCCCGTGAGAAGGGAAGCCTCGAAGGGGCATAG
CCAGCCTTGAGATGAGGGCAATAGCCCGGGGGCTGAGCATACGAAACTAGAGAAGGAAAA
TTGGAAGCATGAGGCTCAGGCCCGGATCCGGTGATAGAGAGGGGCAGCAGCAGCACGTGA
TGAGCGAGGGCTTTGAGAGCACTGCAGAGGGTCGAGTGGTGGCCCGAATGGGTCACCATT
CTCATGAGAGTCACGGGCAGGCCGGA
■■Homology search results ■■ -
sp_hit_id P15195
Definition sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum
Align length 55
Score (bit) 42.7
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_L19, 5'
         (626 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 memb...    43   0.002
sp|O73689|ZIC1_XENLA Zinc finger protein ZIC 1 OS=Xenopus laevis...    31   5.9  
sp|Q5D862|FILA2_HUMAN Filaggrin-2 OS=Homo sapiens GN=FLG2 PE=1 SV=1    31   5.9  

>sp|P15195|CB23_POLMU Chlorophyll a-b binding protein type 1 member
           F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3
           SV=1
          Length = 265

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = -2

Query: 271 LNP*MRSPGSSEPCMLMMAPKKSLHSSSIWYDTDQP----HFFGNPPLYLNS*IP 119
           +N   R  G+ E  + MMAPK    S SIWY +D+P     F G+PP YL+   P
Sbjct: 20  VNELSRKVGAGEARVQMMAPKSKAPSGSIWYGSDRPLYLGPFSGSPPSYLSGEFP 74


>sp|O73689|ZIC1_XENLA Zinc finger protein ZIC 1 OS=Xenopus laevis
           GN=zic1 PE=2 SV=1
          Length = 443

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = +3

Query: 480 IGSMRLRPGSGDREGQQQHVMSEGFESTAEGRVVARMGHHSHESH 614
           +G+ +L P S D    Q       F S A G   A +GHH H  H
Sbjct: 44  MGAFKLNPSSHDLASGQT-----AFTSQAPGYAAAALGHHHHPGH 83


>sp|Q5D862|FILA2_HUMAN Filaggrin-2 OS=Homo sapiens GN=FLG2 PE=1 SV=1
          Length = 2391

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 504 GSGDREGQQQHVMSEGFESTAEGRVVARMGHHSHESHG 617
           GSG   G  QHV   G +S+  G+  +R GH S+  HG
Sbjct: 661 GSGQSSGFGQHVSGSG-QSSGFGQHESRSGHSSYGQHG 697
tr_hit_id A5V437
Definition tr|A5V437|A5V437_SPHWW Beta-lactamase domain protein OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Align length 87
Score (bit) 36.2
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962387|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_L19, 5'
         (626 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5V437|A5V437_SPHWW Beta-lactamase domain protein OS=Sphingom...    36   1.6  
tr|Q0CF36|Q0CF36_ASPTN Predicted protein OS=Aspergillus terreus ...    34   8.1  

>tr|A5V437|A5V437_SPHWW Beta-lactamase domain protein
           OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM
           10273) GN=Swit_0686 PE=4 SV=1
          Length = 597

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +3

Query: 369 GARQAKGP*EGKPRRG-IASLEMRAIARGLSIRN*RRKIGSMRLRPGSGDREGQQQHVMS 545
           G R+  GP  G+P +G + S   R   RGL+ R  RR+  +  L P  G R G+Q   +S
Sbjct: 156 GGRRLLGP-AGQPGQGRLGSASRRDARRGLADRP-RREPPARHLPPSDGHRPGRQHPDLS 213

Query: 546 EGFESTAEGRVVARMGHHSHESHGQAG 626
               +  EGR  AR G H     G  G
Sbjct: 214 SR-SADGEGRRGARAGQHGDLGVGGRG 239


>tr|Q0CF36|Q0CF36_ASPTN Predicted protein OS=Aspergillus terreus
           (strain NIH 2624) GN=ATEG_07698 PE=4 SV=1
          Length = 514

 Score = 33.9 bits (76), Expect = 8.1
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 54  RSYPLPHQSSTTGIRALGKGLVGIHELRYKGGFP-KKWGWSVSYQILLE*RDFLGAIISM 230
           + + LPH +  T       G+ G H L    GFP +KWGW V   + LE  D  GAI  +
Sbjct: 147 KGFALPHGTCPT------VGVAG-HSLGGGWGFPSRKWGWLVDRIVALEFVDVNGAIKQL 199

Query: 231 HGSELPGD 254
             S +  D
Sbjct: 200 SASSVGSD 207