| DK962395 |
| Clone id |
TST39A01NGRL0013_M03 |
| Library |
TST39 |
| Length |
641 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_M03. 5' end sequence. |
| Accession |
DK962395 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1476Contig1 |
| Sequence |
GCCAAAGCGAAGCTTCTGCGTCTAGCAGGCAAACAAAGAGCAGCAGAGATTACAATTTGT CCGATTACAACCATCACATTTCCCTGAACGAGGAGGCCTCTGGCCATGGGGTTGATCAAC TTGCATGTGGGCCTCTTAGGTTTCCCATCAAGAAGGATGATGACGATGGAAAGCTAGAGT TTACAGGTAAAACTTTTCATTCTTCAAGTTTCTGTGGCAGAGAAAGCAGGAAGCACGAAG TTTGCTGTAGTCTTGGAGAGTTTCATGCAGATATCAATCAAAGCAAGGCTTGCATGGTTT TCACACCACATACACCACTTTGGTGTGAGTCAAACCCATCCAGCAATGCCAGAAACTACA GCGTAAGGTCAACAAATCATACCCATGGAGTTCCTGATTTCGCCATGCTTCCCGATGATA TTCTGTTAAGAGTCATGGGATCCTTCTCTTGGAAAGATTTGTGGTCAGCAAGCAGGGTCT GCCGTTCTTGGTGCCTGGCCTTGGCGCCTCTTCGGGAAGCCATGCACTTTGTTCATTGGG GAAAAAGGTTTAAGCATGGCCGTGGAGGAATTGCTCGGAATGTGGATAAAGCTTTGCTCT CTTTTCTAAATGGAGCCAAGCGGGGCTGTACTGCTGCTATG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q94C27 |
| Definition |
sp|Q94C27|FB84_ARATH F-box protein At1g70590 OS=Arabidopsis thaliana |
| Align length |
105 |
| Score (bit) |
104.0 |
| E-value |
4.0e-22 |
| Report |
 |
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A7QXZ9 |
| Definition |
tr|A7QXZ9|A7QXZ9_VITVI Chromosome undetermined scaffold_235, whole genome shotgun sequence OS=Vitis vinifera |
| Align length |
82 |
| Score (bit) |
100.0 |
| E-value |
6.0e-20 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962395|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_M03, 5' (641 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QXZ9|A7QXZ9_VITVI Chromosome undetermined scaffold_235, who... 100 6e-20 tr|A9REC1|A9REC1_PHYPA Predicted protein (Fragment) OS=Physcomit... 100 1e-19 tr|A5ACX1|A5ACX1_VITVI Putative uncharacterized protein OS=Vitis... 85 3e-15 tr|Q7XKU0|Q7XKU0_ORYSJ OSJNBa0022H21.17 protein OS=Oryza sativa ... 53 2e-05 tr|Q0JCE6|Q0JCE6_ORYSJ Os04g0476000 protein OS=Oryza sativa subs... 53 2e-05 tr|Q01IX3|Q01IX3_ORYSA OSIGBa0106G07.11 protein OS=Oryza sativa ... 53 2e-05 tr|B8AVG0|B8AVG0_ORYSI Putative uncharacterized protein OS=Oryza... 53 2e-05 tr|B6U9W6|B6U9W6_MAIZE Sel1-like repeat OS=Zea mays PE=2 SV=1 53 2e-05 tr|Q2R1T3|Q2R1T3_ORYSJ F-box domain containing protein, expresse... 40 0.12 tr|A2XQL5|A2XQL5_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.12 tr|A2Z307|A2Z307_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.27 tr|Q6H596|Q6H596_ORYSJ Putative uncharacterized protein OSJNBa00... 39 0.35 tr|A2Z0U3|A2Z0U3_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.35 tr|Q5ZDE3|Q5ZDE3_ORYSJ Putative uncharacterized protein P0537A05... 38 0.60 tr|Q5ZDC7|Q5ZDC7_ORYSJ Putative uncharacterized protein P0537A05... 38 0.60 tr|Q0JN53|Q0JN53_ORYSJ Os01g0327900 protein (Putative uncharacte... 38 0.60 tr|B8A758|B8A758_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.60 tr|A2ZSJ6|A2ZSJ6_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.60 tr|A2WPB6|A2WPB6_ORYSI Putative uncharacterized protein OS=Oryza... 38 0.60 tr|B6PWU9|B6PWU9_BRAFL Putative uncharacterized protein OS=Branc... 38 0.60 tr|A3A5E7|A3A5E7_ORYSJ Putative uncharacterized protein OS=Oryza... 37 1.0 tr|A2X3B5|A2X3B5_ORYSI Putative uncharacterized protein OS=Oryza... 37 1.0 tr|Q6ESU3|Q6ESU3_ORYSJ Putative uncharacterized protein P0521F09... 37 1.3 tr|Q2R1C8|Q2R1C8_ORYSJ F-box domain containing protein OS=Oryza ... 37 1.3 tr|A2XCE5|A2XCE5_ORYSI Putative uncharacterized protein OS=Oryza... 37 1.3 tr|B0X2D2|B0X2D2_CULQU Putative uncharacterized protein OS=Culex... 36 1.7 tr|B3ERT8|B3ERT8_AMOA5 Putative uncharacterized protein OS=Amoeb... 36 2.3 tr|Q2R1U0|Q2R1U0_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 36 2.3 tr|A3C3B8|A3C3B8_ORYSJ Putative uncharacterized protein OS=Oryza... 36 2.3 tr|B6PGQ4|B6PGQ4_BRAFL Putative uncharacterized protein OS=Branc... 36 2.3
>tr|A7QXZ9|A7QXZ9_VITVI Chromosome undetermined scaffold_235, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009477001 PE=4 SV=1 Length = 335
Score = 100 bits (250), Expect = 6e-20 Identities = 49/82 (59%), Positives = 59/82 (71%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIA 575 DF+ LPDDIL ++ +F+ DL +AS VCRSW +L PLREAM + WGKRFKHG GG+ Sbjct: 52 DFSKLPDDILQKIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVR 111
Query: 576 RNVDKALLSFLNGAKRGCTAAM 641 N+ KAL SFL GA RG T AM Sbjct: 112 PNIQKALDSFLKGAARGSTLAM 133
>tr|A9REC1|A9REC1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_24572 PE=4 SV=1 Length = 256
Score = 100 bits (248), Expect = 1e-19 Identities = 46/78 (58%), Positives = 59/78 (75%) Frame = +3
Query: 408 LPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIARNVD 587 LP D+L R+ GSFSW DLW+A+ C++W ALAPLRE M F+H+GK+FKHG +++N+D Sbjct: 1 LPFDVLQRIAGSFSWHDLWNATCTCKTWNKALAPLREGMLFLHYGKKFKHGH-EVSKNLD 59
Query: 588 KALLSFLNGAKRGCTAAM 641 KAL F GA RGC AAM Sbjct: 60 KALQMFTKGAIRGCAAAM 77
>tr|A5ACX1|A5ACX1_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023688 PE=4 SV=1 Length = 943
Score = 85.1 bits (209), Expect = 3e-15 Identities = 41/71 (57%), Positives = 50/71 (70%) Frame = +3
Query: 429 RVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIARNVDKALLSFL 608 ++ +F+ DL +AS VCRSW +L PLREAM + WGKRFKHG GG+ N+ KAL SFL Sbjct: 46 KIAATFTLPDLQTASLVCRSWRDSLRPLREAMLLLKWGKRFKHGHGGVRPNIQKALDSFL 105
Query: 609 NGAKRGCTAAM 641 GA RG T AM Sbjct: 106 KGAARGSTLAM 116
>tr|Q7XKU0|Q7XKU0_ORYSJ OSJNBa0022H21.17 protein OS=Oryza sativa subsp. japonica GN=OSJNBa0022H21.17 PE=4 SV=2 Length = 381
Score = 52.8 bits (125), Expect = 2e-05 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIA 575 DF+ LP +++ R + + D+ +ASR CR+W AL PLREA G+R KH G A Sbjct: 88 DFSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGRRVKHAAGAAA 147
Query: 576 --------RNVDKALLSFLNGAKRGCTAAM 641 +AL F A+ G AAM Sbjct: 148 AAGAEGRKAERQRALGLFQRAARLGSAAAM 177
>tr|Q0JCE6|Q0JCE6_ORYSJ Os04g0476000 protein OS=Oryza sativa subsp. japonica GN=Os04g0476000 PE=4 SV=1 Length = 475
Score = 52.8 bits (125), Expect = 2e-05 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIA 575 DF+ LP +++ R + + D+ +ASR CR+W AL PLREA G+R KH G A Sbjct: 182 DFSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGRRVKHAAGAAA 241
Query: 576 --------RNVDKALLSFLNGAKRGCTAAM 641 +AL F A+ G AAM Sbjct: 242 AAGAEGRKAERQRALGLFQRAARLGSAAAM 271
>tr|Q01IX3|Q01IX3_ORYSA OSIGBa0106G07.11 protein OS=Oryza sativa GN=OSIGBa0106G07.11 PE=4 SV=1 Length = 385
Score = 52.8 bits (125), Expect = 2e-05 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIA 575 DF+ LP +++ R + + D+ +ASR CR+W AL PLREA G+R KH G A Sbjct: 92 DFSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGRRVKHAAGAAA 151
Query: 576 --------RNVDKALLSFLNGAKRGCTAAM 641 +AL F A+ G AAM Sbjct: 152 AAGAEGRKAERQRALGLFQRAARLGSAAAM 181
>tr|B8AVG0|B8AVG0_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_16304 PE=4 SV=1 Length = 313
Score = 52.8 bits (125), Expect = 2e-05 Identities = 33/90 (36%), Positives = 45/90 (50%), Gaps = 8/90 (8%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKHGRGGIA 575 DF+ LP +++ R + + D+ +ASR CR+W AL PLREA G+R KH G A Sbjct: 20 DFSALPPELVHRALAAAGASDVAAASRACRAWRDALRPLREAAALHARGRRVKHAAGAAA 79
Query: 576 --------RNVDKALLSFLNGAKRGCTAAM 641 +AL F A+ G AAM Sbjct: 80 AAGAEGRKAERQRALGLFQRAARLGSAAAM 109
>tr|B6U9W6|B6U9W6_MAIZE Sel1-like repeat OS=Zea mays PE=2 SV=1 Length = 358
Score = 52.8 bits (125), Expect = 2e-05 Identities = 35/99 (35%), Positives = 48/99 (48%), Gaps = 17/99 (17%) Frame = +3
Query: 396 DFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLREAMHFVHWGKRFKH------ 557 DF+ LP D++ R + + D+ +ASR CR+W AL PLREA +G+R KH Sbjct: 54 DFSALPPDLVHRALAAACASDVAAASRACRAWWDALRPLREAAALHAYGRRVKHDPVTGA 113
Query: 558 --------GRGG---IARNVDKALLSFLNGAKRGCTAAM 641 RGG + +AL F A+ G AAM Sbjct: 114 RAVPAAAASRGGGERVETERQRALGLFRRAARLGSAAAM 152
>tr|Q2R1T3|Q2R1T3_ORYSJ F-box domain containing protein, expressed OS=Oryza sativa subsp. japonica GN=Os11g0593700 PE=4 SV=1 Length = 423
Score = 40.0 bits (92), Expect = 0.12 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = +3
Query: 387 GVPDFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLR 515 G+ D++ LP DI++ VMG DL SA VC SW A +R Sbjct: 2 GISDWSSLPKDIVIVVMGKLEIPDLLSAGAVCASWRAACTAVR 44
>tr|A2XQL5|A2XQL5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_14931 PE=4 SV=1 Length = 423
Score = 40.0 bits (92), Expect = 0.12 Identities = 19/43 (44%), Positives = 25/43 (58%) Frame = +3
Query: 387 GVPDFAMLPDDILLRVMGSFSWKDLWSASRVCRSWCLALAPLR 515 G+ D++ LP DI++ VMG DL SA VC SW A +R Sbjct: 2 GISDWSSLPKDIVIVVMGKLEIPDLLSAGAVCASWRAACTAVR 44
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