DK962426 [AcEST]

DK962426
Clone id	TST39A01NGRL0013_N12
Library	TST39
Length	610
Definition	Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_N12. 5' end sequence.
Accession	DK962426
Tissue type	prothallia with plantlets
Developmental stage	gametophytes with sporophytes
Contig ID	CL187Contig1
Sequence	GTCAAGGGCTATAGCTCAGCGGTAGAGCGCCTCGCTTACACGTGCGCCGACGTTTTTTTG GAAGATTGGTCGAAACCCAACGACTCATGCAAAAACAAGACAATGCATGACCTATCTCTG CCTTACTTTTTTTTTTTCCACAAAGGAACAGTAGCATGACAGACAAATCAATTGCAAATC GATTTCAGAAAGTTGATATGGTGGATAATTGGTTTCTCCAATGCTACAAATGGTTGGACA ATGTGAGGACCACACGAAATCTCTTCCTCGTTTCACGAACTTTCGGGTGTAGGAGGTTTC GCGAAGCTAGCTTCTCCAAGCGACAGAGACTATTTAGGCTTGCGAGCTGGATTTCTGCCC AGCAGAGACAAACCTGTGTCAACACATAACTTATAATCTTATCAAAATACTTCGGGATTG CTTAATTCAGTTCTTATTCATCATGTAGTTCTTCCCAATTTTCTAATTTGAAGGAATATC TGTAAAAGAAAAGGATTAATCGAGCATCCGGAACCATCTCTCCTCACTTATCTGTGAAAC GAAGGTTGGTATATCAGCGCTTGTTTGCCCTCCAGTTGGGGAACAGTTGGTTAAAGAGCC CGATGCCGCG
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q2JW78
Definition	sp\|Q2JW78\|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab)
Align length	49
Score (bit)	30.4
E-value	7.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK962426\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_N12, 5' (610 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q2JW78\|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp.... 30 7.5 >sp\|Q2JW78\|DNAJ_SYNJA Chaperone protein dnaJ OS=Synechococcus sp. (strain JA-3-3Ab) GN=dnaJ PE=3 SV=1 Length = 394 Score = 30.4 bits (67), Expect = 7.5 Identities = 16/49 (32%), Positives = 24/49 (48%) Frame = +1 Query: 247 GPHEISSSFHELSGVGGFAKLASPSDRDYLGLRAGFLPSRDKPVSTHNL 393 G +S F + +G+GGFA L ++ G G+ SR PV +L Sbjct: 74 GAAAAASGFQDFAGIGGFADLFESFFTNFAGGGVGYSRSRQGPVRGDDL 122
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q0C475
Definition	tr\|Q0C475\|Q0C475_HYPNA Conserved domain protein OS=Hyphomonas neptunium (strain ATCC 15444)
Align length	34
Score (bit)	33.5
E-value	10.0
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK962426\|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_N12, 5' (610 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q0C475\|Q0C475_HYPNA Conserved domain protein OS=Hyphomonas ne... 33 10.0 >tr\|Q0C475\|Q0C475_HYPNA Conserved domain protein OS=Hyphomonas neptunium (strain ATCC 15444) GN=HNE_0740 PE=4 SV=1 Length = 166 Score = 33.5 bits (75), Expect = 10.0 Identities = 16/34 (47%), Positives = 22/34 (64%) Frame = +1 Query: 415 GLLNSVLIHHVVLPNFLI*RNICKRKGLIEHPEP 516 G LN VL H +LP+ + R + K GLI+HP+P Sbjct: 129 GQLNQVLCHDELLPSRRMLRPVQKDAGLIQHPKP 162