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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962440
Clone id TST39A01NGRL0013_O04
Library
Length 214
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_O04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCAGAGTTCCAACCCTAGACAGCAGAAGCCGCGAGCGAGGATGTTTTTGGGAGCTATTC
CACGCAGGCCGGAGAAGGCAGAGGCATACAAGGAGCTGCGGCGCCATCTCACCATGCTCG
GCGTTTGGATCGCTGTCATCCGGGCCGTTTCTTACGCCGTGCACTTCCTCTCAAAGCGCG
GCCAAGAGCAGGAGCTCACGCTTGATTTCTGATC
■■Homology search results ■■ -
sp_hit_id Q9XIA7
Definition sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6 homolog OS=Arabidopsis thaliana
Align length 56
Score (bit) 53.1
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_O04, 5'
         (214 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6 ...    53   4e-07
sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus (...    31   1.7  
sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus (...    30   3.7  

>sp|Q9XIA7|TOM6_ARATH Mitochondrial import receptor subunit TOM6
           homolog OS=Arabidopsis thaliana GN=TOM6 PE=1 SV=1
          Length = 54

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLDF 209
           MF G   R+P+KAEA K+LR H+ + G W+ +IRA  Y + + S    + EL +DF
Sbjct: 1   MFPGMFMRKPDKAEALKQLRTHVALFGSWVVIIRAAPYVLSYFS--DSKDELKIDF 54


>sp|Q02597|POLG_TUMVQ Genome polyprotein OS=Turnip mosaic virus
            (strain Quebec) PE=1 SV=2
          Length = 3163

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +1

Query: 13   TLDSRSRERGCFWELFHAGRRRQ 81
            T DSR+RE+G  W + H G RR+
Sbjct: 2739 TFDSRTREKGDLWFMSHQGHRRE 2761


>sp|P89509|POLG_TUMVJ Genome polyprotein OS=Turnip mosaic virus
            (strain Japanese) PE=3 SV=1
          Length = 3164

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 13   TLDSRSRERGCFWELFHAGRRRQ 81
            T DSR+RE+G  W + H G +R+
Sbjct: 2740 TFDSRTREKGDLWFMSHQGHKRE 2762
tr_hit_id A9NJT1
Definition tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 55
Score (bit) 75.9
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962440|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_O04, 5'
         (214 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea...    76   1e-12
tr|A9RR28|A9RR28_PHYPA Predicted protein OS=Physcomitrella paten...    69   2e-10
tr|B4FCR0|B4FCR0_MAIZE Putative uncharacterized protein OS=Zea m...    65   2e-09
tr|Q0DQ74|Q0DQ74_ORYSJ Os03g0626200 protein OS=Oryza sativa subs...    64   4e-09
tr|B8AMN6|B8AMN6_ORYSI Putative uncharacterized protein OS=Oryza...    64   4e-09
tr|A7P968|A7P968_VITVI Chromosome chr3 scaffold_8, whole genome ...    58   3e-07
tr|A9PCI5|A9PCI5_POPTR Putative uncharacterized protein OS=Popul...    57   5e-07
tr|A9PBF2|A9PBF2_POPTR Putative uncharacterized protein OS=Popul...    56   8e-07
tr|Q1EPD4|Q1EPD4_MUSAC Putative uncharacterized protein OS=Musa ...    42   0.012
tr|A9S5T8|A9S5T8_PHYPA Predicted protein OS=Physcomitrella paten...    36   0.86 
tr|A8JB58|A8JB58_CHLRE Predicted protein (Fragment) OS=Chlamydom...    36   0.86 
tr|Q9FHN1|Q9FHN1_ARATH Gb|AAD55616.1 OS=Arabidopsis thaliana GN=...    33   5.6  

>tr|A9NJT1|A9NJT1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 55

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 34/55 (61%), Positives = 44/55 (80%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLD 206
           MFLGAIPRRP+KA AYK+LR+HLT+LG+W+A IR   Y  HFL+K  ++ EL L+
Sbjct: 1   MFLGAIPRRPDKAAAYKQLRKHLTLLGIWVAAIRVAPYVAHFLAK-DKDHELKLE 54


>tr|A9RR28|A9RR28_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160542 PE=4 SV=1
          Length = 170

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 33/56 (58%), Positives = 41/56 (73%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLDF 209
           MFLG IPRRP+KAEA+K L++HLT LG+WI  IRA  Y    +SK  Q++ L LDF
Sbjct: 116 MFLGGIPRRPDKAEAHKTLKKHLTYLGLWICAIRATPYIFALISK--QDESLELDF 169


>tr|B4FCR0|B4FCR0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 56

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 30/55 (54%), Positives = 39/55 (70%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLD 206
           MFLG++PRRP K  AYK+LR H+ ++    AVIRA  Y +HFL++ G  QEL LD
Sbjct: 1   MFLGSLPRRPSKEAAYKQLRSHIIIMASCAAVIRATPYILHFLARDGDIQELKLD 55


>tr|Q0DQ74|Q0DQ74_ORYSJ Os03g0626200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0626200 PE=4 SV=1
          Length = 56

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLD 206
           MFLGAIPRRP K  AYK+LR HL ++   +A IRA  Y +HFL++     ELTL+
Sbjct: 1   MFLGAIPRRPSKEVAYKQLRSHLIVMASCVAAIRAAPYILHFLNRDADRLELTLE 55


>tr|B8AMN6|B8AMN6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12689 PE=4 SV=1
          Length = 56

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 30/55 (54%), Positives = 38/55 (69%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLD 206
           MFLGAIPRRP K  AYK+LR HL ++   +A IRA  Y +HFL++     ELTL+
Sbjct: 1   MFLGAIPRRPSKEVAYKQLRSHLIVMASCVAAIRAAPYILHFLNRDADRLELTLE 55


>tr|A7P968|A7P968_VITVI Chromosome chr3 scaffold_8, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00036448001
           PE=4 SV=1
          Length = 54

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLDF 209
           MF G   R+P+KA A K+LR H+ M G W+AV+R   Y +H+ S   +++EL +DF
Sbjct: 1   MFSGMFARKPDKAVALKQLRTHVVMFGAWVAVVRVTPYILHYFS--DEKEELKIDF 54


>tr|A9PCI5|A9PCI5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 54

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 25/56 (44%), Positives = 37/56 (66%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLDF 209
           MF G   R+P+KAEA K+L+ H+ M G W+ V+R   Y +H+LS   ++ EL L+F
Sbjct: 1   MFPGMFMRKPDKAEALKQLKSHVAMFGAWVVVLRVTPYVLHYLS--DEKDELKLEF 54


>tr|A9PBF2|A9PBF2_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=4 SV=1
          Length = 54

 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 24/56 (42%), Positives = 37/56 (66%)
 Frame = +3

Query: 42  MFLGAIPRRPEKAEAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQEQELTLDF 209
           MF G   ++P+KAEA K+LR H+ M G W+ V+R   Y +H++S   ++ EL L+F
Sbjct: 1   MFPGLFMKKPDKAEALKQLRSHVAMFGAWVVVLRVTPYVLHYISH--EKDELKLEF 54


>tr|Q1EPD4|Q1EPD4_MUSAC Putative uncharacterized protein OS=Musa
           acuminata GN=MA4_8L21.52 PE=4 SV=1
          Length = 105

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 21/39 (53%), Positives = 25/39 (64%)
 Frame = -3

Query: 155 VRNGPDDSDPNAEHGEMAPQLLVCLCLLRPAWNSSQKHP 39
           VR+  DD DP A  GEM  QLLV   L+RP   +SQ+HP
Sbjct: 50  VRSDADDGDPRAHDGEMGLQLLVRRGLVRPPGKTSQEHP 88


>tr|A9S5T8|A9S5T8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_74963 PE=4 SV=1
          Length = 234

 Score = 36.2 bits (82), Expect = 0.86
 Identities = 14/36 (38%), Positives = 23/36 (63%)
 Frame = +3

Query: 81  EAYKELRRHLTMLGVWIAVIRAVSYAVHFLSKRGQE 188
           EA ++LR+HL +L +W+A IR+  Y +      G+E
Sbjct: 112 EALQQLRKHLAVLALWVAAIRSAPYFLSMWESHGRE 147