DK962447 |
Clone id |
TST39A01NGRL0013_O11 |
Library |
TST39 |
Length |
628 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_O11. 5' end sequence. |
Accession |
DK962447 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL64Contig1 |
Sequence |
TTAAAATTCGCTCAATACACTGGTGCTCAGGCGATTGCTGGACGTCACACTCCAGGAACG TTTACCAATCAGCTTCAGAACACGTTTTGTGAGCCTCGGCTCTTGATTTTGACAGACCCA CGTACTGATCATCAGCCTATCAAAGAGGCTGCGCTTGGAAACATCCCTATTATTGCATTT TGTGACACAGATTCCCCCATGCGCCATGTGGACATTGGTATCCCTGCTAATAACAAGGGG AAGCACAGTATCGGTTGTCTTTTTTGGATGCTAGCTCGCATGGTTCTCCAGATGAGGGGA ACTATTTCTCCACGCCAGCCGTGGGATGTCATGGTGGATCTGTTCTTCTATCGTGAGCCA GAGGAAGCCAAGGAGCGTGAGGAGGAGGAAGGTGCTGCACCAGAATTTGCACCTACAGAG TATAATGCGCCTCCTACAATTGCTGCCGTCGCAGCAGCTCCTGACCAATGGGGTGAGGGA GGTGATGCTGGAAACTGGGAGCCAGCAGTGCCAGCCGCAGCAGCTGCTGCGGTGCAGGCC CCTGCCCAAGAGTGGACTGGAGCTGCTGCTCCTGCCCAAGGATGGGATGCTGCTCCTGCT CCTGCACCTGCCCCTGCCCCGGCTCCGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9ZSR8 |
Definition |
sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA OS=Brassica napus |
Align length |
118 |
Score (bit) |
226.0 |
E-value |
6.0e-59 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S9Z5 |
Definition |
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
168 |
Score (bit) |
226.0 |
E-value |
1.0e-57 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962447|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_O11, 5' (628 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomit... 226 1e-57 tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella paten... 225 1e-57 tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella paten... 225 1e-57 tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomit... 224 3e-57 tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea... 224 3e-57 tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea... 224 3e-57 tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Ar... 224 4e-57 tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome ... 223 6e-57 tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis... 223 6e-57 tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medic... 223 7e-57 tr|A9P891|A9P891_POPTR Putative uncharacterized protein OS=Popul... 223 1e-56 tr|Q8H3I3|Q8H3I3_ORYSJ Os07g0616600 protein OS=Oryza sativa subs... 221 3e-56 tr|A2YNQ0|A2YNQ0_ORYSI Putative uncharacterized protein OS=Oryza... 221 3e-56 tr|A2XHR6|A2XHR6_ORYSI Putative uncharacterized protein OS=Oryza... 221 3e-56 tr|B6TIC4|B6TIC4_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 221 4e-56 tr|B6SSF3|B6SSF3_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 221 4e-56 tr|B4FZ84|B4FZ84_MAIZE Putative uncharacterized protein OS=Zea m... 221 4e-56 tr|Q94HF0|Q94HF0_ORYSA Putative 40S Ribosomal protein OS=Oryza s... 220 5e-56 tr|Q10QU9|Q10QU9_ORYSJ cDNA clone:001-007-D06, full insert seque... 220 5e-56 tr|Q10QU8|Q10QU8_ORYSJ 40S ribosomal protein SA, putative, expre... 220 5e-56 tr|A2XD89|A2XD89_ORYSI Putative uncharacterized protein OS=Oryza... 220 5e-56 tr|Q38M60|Q38M60_SOLTU Ribosome-associated protein p40-like OS=S... 219 1e-55 tr|Q308A0|Q308A0_SOLTU P40-like protein OS=Solanum tuberosum PE=... 219 1e-55 tr|B4G194|B4G194_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 219 1e-55 tr|B4FSQ4|B4FSQ4_MAIZE Putative uncharacterized protein OS=Zea m... 219 1e-55 tr|A9P906|A9P906_POPTR Putative uncharacterized protein OS=Popul... 218 2e-55 tr|A9P801|A9P801_POPTR Putative uncharacterized protein OS=Popul... 218 2e-55 tr|B6T782|B6T782_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 218 3e-55 tr|B6T6X2|B6T6X2_MAIZE 40S ribosomal protein SA OS=Zea mays PE=2... 218 3e-55 tr|B4FTD2|B4FTD2_MAIZE Putative uncharacterized protein OS=Zea m... 218 3e-55
>tr|A9S9Z5|A9S9Z5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_126323 PE=3 SV=1 Length = 305
Score = 226 bits (575), Expect = 1e-57 Identities = 115/168 (68%), Positives = 121/168 (72%), Gaps = 1/168 (0%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTG QAIAGRHTPGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAF Sbjct: 80 LKFAQYTGCQAIAGRHTPGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAF 139
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXX 360 CDTDSPM++VDI IPANNKGKHSIG LFW+LARMVLQMRGTIS +PWDVMVDLFFYR Sbjct: 140 CDTDSPMKYVDIAIPANNKGKHSIGALFWLLARMVLQMRGTISAAKPWDVMVDLFFYREP 199
Query: 361 XXXXXXXXXXXXXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 501 Y QWG E +AG WE Sbjct: 200 DEGKDRDEEEAGAAEFAAVEY---PAPALGMVGDAQWGPEAAEAGQWE 244
>tr|A9TDH1|A9TDH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_193949 PE=3 SV=1 Length = 292
Score = 225 bits (574), Expect = 1e-57 Identities = 115/168 (68%), Positives = 120/168 (71%), Gaps = 1/168 (0%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTG QAIAGRHTPGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAF Sbjct: 79 LKFAQYTGCQAIAGRHTPGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAF 138
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXX 360 CDTDSPM++VDI IPANNKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 139 CDTDSPMKYVDIAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREP 198
Query: 361 XXXXXXXXXXXXXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 501 Y QWG E +AG WE Sbjct: 199 DEGKDREEEEGGAAEFAAVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9S4V0|A9S4V0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_105781 PE=3 SV=1 Length = 292
Score = 225 bits (574), Expect = 1e-57 Identities = 115/168 (68%), Positives = 120/168 (71%), Gaps = 1/168 (0%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTG QAIAGRHTPGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAF Sbjct: 79 LKFAQYTGCQAIAGRHTPGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAF 138
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYRXX 360 CDTDSPM++VDI IPANNKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 139 CDTDSPMKYVDIAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYREP 198
Query: 361 XXXXXXXXXXXXXXXXXXXXYNXXXXXXXXXXXXDQWG-EGGDAGNWE 501 Y QWG E +AG WE Sbjct: 199 DEGKDREEEEGGAAEFAAVEY---AAPTLALGGDAQWGPEAAEAGQWE 243
>tr|A9T6E0|A9T6E0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_46426 PE=3 SV=1 Length = 278
Score = 224 bits (572), Expect = 3e-57 Identities = 106/118 (89%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTG QAIAGRHTPGTFTNQLQNTF EPRLLILTDPRTDHQPI EAALGNIP+IAF Sbjct: 77 LKFAQYTGCQAIAGRHTPGTFTNQLQNTFSEPRLLILTDPRTDHQPIMEAALGNIPVIAF 136
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPM++VDI IPANNKGKHSIG LFW+LARMVLQMRGTIS PWDVMVDLFFYR Sbjct: 137 CDTDSPMKYVDIAIPANNKGKHSIGALFWLLARMVLQMRGTISAAHPWDVMVDLFFYR 194
>tr|A9P0C9|A9P0C9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 224 bits (572), Expect = 3e-57 Identities = 105/118 (88%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQ+Q +F EPRLLILTDPRTDHQPI+EAALGNIP IAF Sbjct: 88 LKFAQYTGAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAF 147
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPM+HVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 148 CDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR 205
>tr|A9NV56|A9NV56_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 319
Score = 224 bits (572), Expect = 3e-57 Identities = 105/118 (88%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQ+Q +F EPRLLILTDPRTDHQPI+EAALGNIP IAF Sbjct: 88 LKFAQYTGAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIREAALGNIPTIAF 147
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPM+HVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTI P WD+MVDLFFYR Sbjct: 148 CDTDSPMKHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTILPGHKWDIMVDLFFYR 205
>tr|Q2V4D3|Q2V4D3_ARATH Uncharacterized protein At1g72370.2 OS=Arabidopsis thaliana GN=At1g72370 PE=3 SV=1 Length = 294
Score = 224 bits (570), Expect = 4e-57 Identities = 106/118 (89%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQ+Q +F EPRLLILTDPRTDHQPIKE ALGNIPIIAF Sbjct: 92 LKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTDHQPIKEGALGNIPIIAF 151
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPMR VDIGIPANNKGKHSIGCLFW+LARMVLQMRGTI+ Q WDVMVDLFFYR Sbjct: 152 CDTDSPMRFVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIAAGQKWDVMVDLFFYR 209
>tr|A7P6D1|A7P6D1_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034021001 PE=3 SV=1 Length = 274
Score = 223 bits (569), Expect = 6e-57 Identities = 106/118 (89%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQLQ +F EPRLLILTDPRTDHQPIKEAALGNIP IAF Sbjct: 88 LKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAF 147
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPMR+VDIGIPANNKGKHSIGCLFW+LARMVLQMR TI+P WDVMVDLFFYR Sbjct: 148 CDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYR 205
>tr|A5BUU4|A5BUU4_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015795 PE=3 SV=1 Length = 312
Score = 223 bits (569), Expect = 6e-57 Identities = 106/118 (89%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQLQ +F EPRLLILTDPRTDHQPIKEAALGNIP IAF Sbjct: 88 LKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAF 147
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPMR+VDIGIPANNKGKHSIGCLFW+LARMVLQMR TI+P WDVMVDLFFYR Sbjct: 148 CDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRRTIAPGHKWDVMVDLFFYR 205
>tr|B7FID3|B7FID3_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 299
Score = 223 bits (568), Expect = 7e-57 Identities = 106/118 (89%), Positives = 110/118 (93%) Frame = +1
Query: 1 LKFAQYTGAQAIAGRHTPGTFTNQLQNTFCEPRLLILTDPRTDHQPIKEAALGNIPIIAF 180 LKFAQYTGA AIAGRHTPGTFTNQ+Q +F EPRLLILTDPRTDHQPIKEAALGNIP IAF Sbjct: 91 LKFAQYTGANAIAGRHTPGTFTNQMQVSFSEPRLLILTDPRTDHQPIKEAALGNIPTIAF 150
Query: 181 CDTDSPMRHVDIGIPANNKGKHSIGCLFWMLARMVLQMRGTISPRQPWDVMVDLFFYR 354 CDTDSPMR+VDIGIPANNKGKHSIGCLFW+LARMVLQMRGTI P WDVMVDLFFYR Sbjct: 151 CDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGLKWDVMVDLFFYR 208
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