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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962457
Clone id TST39A01NGRL0013_O21
Library
Length 615
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_O21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTGTTTAAAGGGGGGCATCCTTTCCCTTTGTTTCCAATCACTTTTTTCTTTTTTTGTATG
TGCTTTTCTGCCCCCAAAGCTGACTTTGATTTGCAATCTACTACTACTACAACTCTCTGG
GCCATCAAATCCGCTCACATGAGCATATCACTCCCTTTGTTTGAAGTTCTCTTCTTTGAG
TTTGATTCTAGCTGATCATGGGTGGTCCTGGTTGGTTCCTGTCTGTGTGTGCGTTCAAAA
GTGTCAAAAGGGTTTATTGAAGGCAATCCCTTCATTTATGTGTGAGCTTCTCTTAATCAC
AGTACCATACCTGCCTTAATTTTTCCATATTTGTGTTTGATCCAAATACACAACATACAA
TTTAAGGTGGGCTGTGGAGGATTTTTGCATACACAACACCCTAACTCTTTGCAGAATGTG
CTTCATTCATACTTGCCTTCATGTTTTGAGTTCAATTTATCTCTTCATTTTTTGCATGAT
TATTTTTCTTCTGCAAGGGTTTCTTCAAGCTCCATAGCCTGTCTCACTTGCCAAGAGGGA
GGATGTCTGCTCTGCAACCATTCTACAGAGAGGGAAAGTGCCTAGCCTCCTCTGCGGCTA
TCCTGCATCTCTCCT
■■Homology search results ■■ -
sp_hit_id A4IXV3
Definition sp|A4IXV3|SYFA_FRATW Phenylalanyl-tRNA synthetase alpha chain OS=Francisella tularensis subsp. tularensis (strain WY96-3418)
Align length 53
Score (bit) 36.6
E-value 0.11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962457|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_O21, 5'
         (615 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4IXV3|SYFA_FRATW Phenylalanyl-tRNA synthetase alpha chain OS...    37   0.11 
sp|Q5NG53|SYFA_FRATT Phenylalanyl-tRNA synthetase alpha chain OS...    37   0.11 
sp|A0Q6A6|SYFA_FRATN Phenylalanyl-tRNA synthetase alpha chain OS...    37   0.11 
sp|Q14HK5|SYFA_FRAT1 Phenylalanyl-tRNA synthetase alpha chain OS...    37   0.11 
sp|Q0BLJ8|SYFA_FRATO Phenylalanyl-tRNA synthetase alpha chain OS...    35   0.24 
sp|Q2A322|SYFA_FRATH Phenylalanyl-tRNA synthetase alpha chain OS...    35   0.24 
sp|A7NCN7|SYFA_FRATF Phenylalanyl-tRNA synthetase alpha chain OS...    35   0.24 
sp|B0U0C4|SYFA_FRAP2 Phenylalanyl-tRNA synthetase alpha chain OS...    35   0.24 
sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7 OS=Arabido...    34   0.68 
sp|O67087|SYFA_AQUAE Phenylalanyl-tRNA synthetase alpha chain OS...    33   1.5  
sp|Q822B5|SYFA_CHLCV Phenylalanyl-tRNA synthetase alpha chain OS...    32   2.0  
sp|Q60AZ0|SYFA_METCA Phenylalanyl-tRNA synthetase alpha chain OS...    32   2.6  
sp|O80739|POT12_ARATH Putative potassium transporter 12 OS=Arabi...    32   2.6  
sp|A6SXP9|FABH_JANMA 3-oxoacyl-[acyl-carrier-protein] synthase 3...    32   3.4  
sp|Q5L5A8|SYFA_CHLAB Phenylalanyl-tRNA synthetase alpha chain OS...    31   4.5  
sp|Q9Z6R6|SYFA_CHLPN Phenylalanyl-tRNA synthetase alpha chain OS...    30   7.6  
sp|Q9MUN7|CEMA_MESVI Chloroplast envelope membrane protein OS=Me...    30   9.9  

>sp|A4IXV3|SYFA_FRATW Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. tularensis (strain
           WY96-3418) GN=pheS PE=3 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|Q5NG53|SYFA_FRATT Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. tularensis GN=pheS PE=3
           SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|A0Q6A6|SYFA_FRATN Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. novicida (strain U112)
           GN=pheS PE=3 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|Q14HK5|SYFA_FRAT1 Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. tularensis (strain FSC
           198) GN=pheS PE=3 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 0.11
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|Q0BLJ8|SYFA_FRATO Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. holarctica (strain
           OSU18) GN=pheS PE=3 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH +L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHVFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|Q2A322|SYFA_FRATH Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. holarctica (strain LVS)
           GN=pheS PE=3 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH +L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHVFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|A7NCN7|SYFA_FRATF Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella tularensis subsp. holarctica (strain FTA)
           GN=pheS PE=3 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH +L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHVFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>sp|B0U0C4|SYFA_FRAP2 Phenylalanyl-tRNA synthetase alpha chain
           OS=Francisella philomiragia subsp. philomiragia (strain
           ATCC 25017) GN=pheS PE=3 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 0.24
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          + C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADMECVMCDGKGCRVCKHT 275


>sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7
           OS=Arabidopsis thaliana GN=UPL7 PE=2 SV=1
          Length = 1142

 Score = 33.9 bits (76), Expect = 0.68
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 562 NGCRADILPLGK*DRLWSLKKPLQKKNNHAKNEEIN 455
           NGC AD    G     W+ + P +KK  H KN+ +N
Sbjct: 519 NGCTADDASHGSAKTSWNTRSPSEKKLKHLKNDSVN 554


>sp|O67087|SYFA_AQUAE Phenylalanyl-tRNA synthetase alpha chain
           OS=Aquifex aeolicus GN=pheS PE=3 SV=1
          Length = 338

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYFXXXXXXXXX-IACLTCQEGGCLLCNHS 564
           ++ V+  +L   FE +L + F   YF          I C+ C + GC +C H+
Sbjct: 223 MKYVIEEFLKKFFETDLPVRFRTSYFPFTEPSAEVDIGCVICHQEGCRVCKHT 275
tr_hit_id B2SGL8
Definition tr|B2SGL8|B2SGL8_FRATM Phenylalanyl-tRNA synthetase, alpha subunit OS=Francisella tularensis subsp. mediasiatica (strain FSC147)
Align length 53
Score (bit) 36.6
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962457|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_O21, 5'
         (615 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2SGL8|B2SGL8_FRATM Phenylalanyl-tRNA synthetase, alpha subun...    37   1.2  
tr|B4ATW4|B4ATW4_FRANO Phenylalanyl-tRNA synthetase, alpha subun...    37   1.2  
tr|A7JLS8|A7JLS8_FRANO Phenylalanyl-tRNA synthetase alpha-chain ...    37   1.2  
tr|A7JHN3|A7JHN3_FRANO Phenylalanyl-tRNA synthetase OS=Francisel...    37   1.2  
tr|A7JCN4|A7JCN4_FRATT Phenylalanyl-tRNA synthetase OS=Francisel...    37   1.2  
tr|A7YU15|A7YU15_FRATU Phenylalanine-tRNA ligase OS=Francisella ...    35   2.7  
tr|A4KRV8|A4KRV8_FRATU Phenylalanyl-tRNA synthetase, alpha subun...    35   2.7  
tr|A1WU57|A1WU57_HALHL Phenylalanyl-tRNA synthetase, alpha subun...    34   6.0  

>tr|B2SGL8|B2SGL8_FRATM Phenylalanyl-tRNA synthetase, alpha subunit
           OS=Francisella tularensis subsp. mediasiatica (strain
           FSC147) GN=pheS PE=4 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|B4ATW4|B4ATW4_FRANO Phenylalanyl-tRNA synthetase, alpha subunit
           OS=Francisella novicida FTE GN=pheS PE=4 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A7JLS8|A7JLS8_FRANO Phenylalanyl-tRNA synthetase alpha-chain
           OS=Francisella novicida GA99-3548 GN=FTDG_00461 PE=3
           SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A7JHN3|A7JHN3_FRANO Phenylalanyl-tRNA synthetase OS=Francisella
           novicida GA99-3549 GN=FTCG_00413 PE=3 SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A7JCN4|A7JCN4_FRATT Phenylalanyl-tRNA synthetase OS=Francisella
           tularensis subsp. tularensis FSC033 GN=FTBG_00364 PE=3
           SV=1
          Length = 337

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH++L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHAFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A7YU15|A7YU15_FRATU Phenylalanine-tRNA ligase OS=Francisella
           tularensis subsp. holarctica FSC022 GN=FTAG_00480 PE=3
           SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH +L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHVFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A4KRV8|A4KRV8_FRATU Phenylalanyl-tRNA synthetase, alpha subunit
           OS=Francisella tularensis subsp. holarctica 257
           GN=FTHG_01136 PE=3 SV=1
          Length = 337

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ +LH +L S FE +L + F   YF          I C+ C   GC +C H+
Sbjct: 223 LKGLLHVFLNSFFEKDLKVRFRPSYFPFTEPSAEADIECVMCDGKGCRVCKHT 275


>tr|A1WU57|A1WU57_HALHL Phenylalanyl-tRNA synthetase, alpha subunit
           OS=Halorhodospira halophila (strain DSM 244 / SL1)
           GN=Hhal_0431 PE=3 SV=1
          Length = 343

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 409 LQNVLHSYLPSCFEFNLSLHFLHDYF-XXXXXXXXXIACLTCQEGGCLLCNHS 564
           L+ VLH +L + FE  +++ F   YF          + C+ C   GC +C HS
Sbjct: 228 LKGVLHEFLNAFFERPVAVRFRPSYFPFTEPSAEVDVECVICGGEGCRVCKHS 280