DK962471
Clone id TST39A01NGRL0013_P12
Library
Length 408
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_P12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GATGTCGTGCTGCAATGGTAACTGTGGGTGCGGCGCAAACTGTCATTGTTTTAGCAGCTG
CAAGGGGTGCGGCCGAACTGACAGCCTTGTGCTGTCGAAGGAGGCGCCTCTCGTTCTCAG
TGCCACTGCCTCCGTCTGCCCCAGCTATGAAAGGGCTCTAGGTTTCGGAGTGGAGAACAT
CTCTGGGTATCTTGGCTCTCCTACTTCTTGTTTCCCTCTCAACTGAGCTTAAGGTAGCCT
AGTACAAGGGGTTGCCTTAATAACACCAAAAATAATGTATTTGTATTTAGTTAATAGTCA
GTCGTGCAATTAACATCCATGGATCGCTTGTACATAGTATGCTCACCTTTGTAATCTTGG
AATTTGGTAATGATAATGATAATGGCTTAAGCCAAGCCATAAAATGCG
■■Homology search results ■■ -
sp_hit_id P46152
Definition sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norvegicus
Align length 53
Score (bit) 30.8
E-value 2.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962471|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_P12, 5'
(408 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus norveg... 31 2.2
sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculu... 31 2.2
sp|P49762|DOA_DROME Serine/threonine-protein kinase Doa OS=Droso... 30 5.0
sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacteri... 29 6.5

>sp|P46152|GATA4_RAT Transcription factor GATA-4 OS=Rattus
norvegicus GN=Gata4 PE=1 SV=1
Length = 440

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1

Query: 228 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRP 70
A L G+++ G P + +S+P P ++ +G + A A FDS L P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLP 193


>sp|Q08369|GATA4_MOUSE Transcription factor GATA-4 OS=Mus musculus
GN=Gata4 PE=1 SV=3
Length = 440

Score = 30.8 bits (68), Expect = 2.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -1

Query: 228 AQLRGKQEVGEPRYPEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRP 70
A L G+++ G P + +S+P P ++ +G + A A FDS L P
Sbjct: 141 AGLAGREQYGRPGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLP 193


>sp|P49762|DOA_DROME Serine/threonine-protein kinase Doa
OS=Drosophila melanogaster GN=Doa PE=1 SV=2
Length = 832

Score = 29.6 bits (65), Expect = 5.0
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -1

Query: 186 PEMFSTPKPRALS*LGQTEAVALRTRGASFDSTRLSVRPHPLQLLKQ*QFAPHPQLPLQH 7
P+M+ P+ S +G A T ASF S + RP LQ +Q Q H Q QH
Sbjct: 246 PQMYGYQAPQQQSKIGYPRTGAPLTHSASFSSAQ---RPTALQFHQQHQQQQHLQQQQQH 302


>sp|B1ZBR8|GLMM_METPB Phosphoglucosamine mutase OS=Methylobacterium
populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
GN=glmM PE=3 SV=1
Length = 446

Score = 29.3 bits (64), Expect = 6.5
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1

Query: 121 CHCLR-LPQL*KGSRFRSGEHL 183
CHC LPQ+ K RFRSGE L
Sbjct: 364 CHCFEPLPQILKNVRFRSGEPL 385


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962471|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0013_P12, 5'
(408 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******