DK962478 |
Clone id |
TST39A01NGRL0013_P19 |
Library |
TST39 |
Length |
582 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0013_P19. 5' end sequence. |
Accession |
DK962478 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL708Contig1 |
Sequence |
TCGCCCTGCATCTTGTGCACCAGTAAAGTTCGTGGCTATGGCGGCAACTCTCTCGTCTTC TTCCATGTCTGTCTCAGTACCATCGAGGAGTTCATTCCTGGGAAGTAAAGATCAGTTTTG CTGCTCTCCTTCCATCTCCGTATCTTCCAGTAAGGTATCCGTCCCGGTCATCAGAGCCAC ATCACGAGTTGACAAATTCTCAAAGTCTGACATTATCGTCTCCCCCTCTATCTTGTCTGC AAATTTTTCCAAATTGGGAGAGCAGGTCAAGGCAGTGGATGAAGCAGGATGTGACTGGAT TCATGTAGATGTGATGGACGGTAGGTTTGTACCAAACATCACAATTGGACCACTGGTGGT AGATGCATTAAGGCCTGTCACTGACTTACCTCTTGATGTGCATCTGATGATTGTTGAGCC TGAACAAAGAGTGCCGGACTTTGTGAAAGCTGGTGCGGATATTGTTAGTGTGCATTGTGA ACAGTCTTCCACGATCCATTTGCATAGGACTTTAAATCAGATCAAGAGTTTGGGTGCTAA AGCTGGAGTAGTGCTAAACCCTGGTACCCCATTGACTGGCAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q43843 |
Definition |
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum |
Align length |
134 |
Score (bit) |
259.0 |
E-value |
7.0e-69 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962478|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0013_P19, 5' (582 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplasti... 259 7e-69 sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplasti... 259 9e-69 sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplasti... 256 7e-68 sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocys... 190 4e-48 sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus s... 162 9e-40 sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal... 134 3e-31 sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=... 131 3e-30 sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex ae... 126 7e-29 sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacte... 124 4e-28 sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera a... 124 4e-28 sp|P57603|RPE_BUCAI Ribulose-phosphate 3-epimerase OS=Buchnera a... 123 8e-28 sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia m... 120 4e-27 sp|P0AG10|RPE_SHIFL Ribulose-phosphate 3-epimerase OS=Shigella f... 118 2e-26 sp|P0AG07|RPE_ECOLI Ribulose-phosphate 3-epimerase OS=Escherichi... 118 2e-26 sp|P0AG08|RPE_ECOL6 Ribulose-phosphate 3-epimerase OS=Escherichi... 118 2e-26 sp|P0AG09|RPE_ECO57 Ribulose-phosphate 3-epimerase OS=Escherichi... 118 2e-26 sp|P65760|RPE_MYCTU Ribulose-phosphate 3-epimerase OS=Mycobacter... 115 2e-25 sp|P65761|RPE_MYCBO Ribulose-phosphate 3-epimerase OS=Mycobacter... 115 2e-25 sp|O66107|RPE_TREPA Ribulose-phosphate 3-epimerase OS=Treponema ... 114 3e-25 sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilu... 113 6e-25 sp|P51013|RPE_RHORU Ribulose-phosphate 3-epimerase OS=Rhodospiri... 113 8e-25 sp|Q9L0Z5|RPE_STRCO Ribulose-phosphate 3-epimerase OS=Streptomyc... 112 1e-24 sp|O84123|RPE_CHLTR Ribulose-phosphate 3-epimerase OS=Chlamydia ... 108 1e-23 sp|Q9CCP9|RPE_MYCLE Ribulose-phosphate 3-epimerase OS=Mycobacter... 108 3e-23 sp|Q9Z8Z9|RPE_CHLPN Ribulose-phosphate 3-epimerase OS=Chlamydia ... 107 3e-23 sp|Q9PKR7|RPE_CHLMU Ribulose-phosphate 3-epimerase OS=Chlamydia ... 107 4e-23 sp|Q9ZJ75|RPE_HELPJ Ribulose-phosphate 3-epimerase OS=Helicobact... 102 2e-21 sp|Q89A59|RPE_BUCBP Ribulose-phosphate 3-epimerase OS=Buchnera a... 102 2e-21 sp|P56188|RPE_HELPY Ribulose-phosphate 3-epimerase OS=Helicobact... 101 3e-21 sp|Q9SE42|RPE1_ORYSJ Ribulose-phosphate 3-epimerase, cytoplasmic... 99 2e-20
>sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1 Length = 280
Score = 259 bits (662), Expect = 7e-69 Identities = 125/134 (93%), Positives = 134/134 (100%) Frame = +2
Query: 176 ATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPL 355 A+SRVDKFSKSDIIVSPSILSANFSKLGEQVKA+++AGCDWIHVDVMDGRFVPNITIGPL Sbjct: 45 ASSRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPL 104
Query: 356 VVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLG 535 VVD+LRP+TDLPLDVHLMIVEP+QRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSLG Sbjct: 105 VVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLG 164
Query: 536 AKAGVVLNPGTPLT 577 AKAGVVLNPGTPLT Sbjct: 165 AKAGVVLNPGTPLT 178
>sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2 Length = 274
Score = 259 bits (661), Expect = 9e-69 Identities = 128/135 (94%), Positives = 133/135 (98%) Frame = +2
Query: 173 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 352 RA+SRVDKFSK+DIIVSPSILSANFSKLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 38 RASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVMDGRFVPNITIGP 97
Query: 353 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 532 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCEQSSTIHLHRT+NQIKSL Sbjct: 98 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSL 157
Query: 533 GAKAGVVLNPGTPLT 577 GAKAGVVLNP TPLT Sbjct: 158 GAKAGVVLNPATPLT 172
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1 Length = 285
Score = 256 bits (653), Expect = 7e-68 Identities = 126/135 (93%), Positives = 133/135 (98%) Frame = +2
Query: 173 RATSRVDKFSKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGP 352 +ATSRVDKFSKSDIIVSPSILSANF+KLGEQVKAV+ AGCDWIHVDVMDGRFVPNITIGP Sbjct: 49 KATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP 108
Query: 353 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSL 532 LVVDALRPVTDLPLDVHLMIVEPEQRVPDF+KAGADIVSVHCE +STIHLHRT+NQIKSL Sbjct: 109 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSL 168
Query: 533 GAKAGVVLNPGTPLT 577 GAKAGVVLNPGTPL+ Sbjct: 169 GAKAGVVLNPGTPLS 183
>sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803) GN=rpe PE=1 SV=3 Length = 230
Score = 190 bits (483), Expect = 4e-48 Identities = 91/122 (74%), Positives = 107/122 (87%) Frame = +2
Query: 209 DIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 388 +I+V+PSILSA+FS+LGE++KAVDEAG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 389 PLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGT 568 LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI+ LG KAG VLNP T Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 569 PL 574 PL Sbjct: 124 PL 125
>sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis GN=rpe PE=3 SV=1 Length = 217
Score = 162 bits (411), Expect = 9e-40 Identities = 80/121 (66%), Positives = 98/121 (80%) Frame = +2
Query: 212 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 391 I V+PSILSA+F+ LG ++K V++ G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 392 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTP 571 LDVHLMI EP++ +P F KAGADI+SVH E + HLHRT+ IK G KAGVVLNP TP Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAE--ACPHLHRTIQLIKEQGVKAGVVLNPHTP 119
Query: 572 L 574 + Sbjct: 120 V 120
>sp|P40117|RPEC_RALEH Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1 Length = 241
Score = 134 bits (337), Expect = 3e-31 Identities = 65/125 (52%), Positives = 91/125 (72%) Frame = +2
Query: 200 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 379 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +VPN+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 380 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLN 559 +P+DVHLM+ + +P F KAGA+I+S H E S H+ RT+ I+ G KAG+VLN Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 560 PGTPL 574 P TPL Sbjct: 130 PATPL 134
>sp|Q04539|RPEP_RALEH Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1 Length = 241
Score = 131 bits (329), Expect = 3e-30 Identities = 63/126 (50%), Positives = 91/126 (72%) Frame = +2
Query: 200 SKSDIIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 379 S+ I ++PSILSA+F++LGE+V A++ G D +H DVMD +V N+TIGPLV +A+RP+ Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 380 TDLPLDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLN 559 +P+DVHLM+ + +P F KAGA+++S H E S H+ RT+ I+ G KAG+VLN Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 560 PGTPLT 577 P TPL+ Sbjct: 130 PATPLS 135
>sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus GN=rpe PE=3 SV=1 Length = 222
Score = 126 bits (317), Expect = 7e-29 Identities = 62/121 (51%), Positives = 86/121 (71%) Frame = +2
Query: 215 IVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 394 +++PSIL+ ++ +GEQ++A G D +H DVMDG FVPNIT G ++ +R LP+ Sbjct: 3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPI 62
Query: 395 DVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTPL 574 D HLMI P++ +P FV+AGA+ +SVH E + H+HRTL IK LGAKAGVV+NPGT L Sbjct: 63 DAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSL 120
Query: 575 T 577 + Sbjct: 121 S 121
>sp|P51012|RPE_RHOCA Ribulose-phosphate 3-epimerase OS=Rhodobacter capsulatus GN=cbbE PE=3 SV=2 Length = 228
Score = 124 bits (310), Expect = 4e-28 Identities = 57/120 (47%), Positives = 81/120 (67%) Frame = +2
Query: 212 IIVSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 391 I ++PSILSA+F+ G +++A++ G DW+HVDVMDG FVPN+T GP V A R Sbjct: 7 IKIAPSILSADFADFGREIQAIEAQGADWVHVDVMDGHFVPNLTFGPPAVAAFRKHVKTV 66
Query: 392 LDVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTP 571 +DVHLMI + + + +AGAD+++ H E H+HRTL I++ G K+GV +NPGTP Sbjct: 67 MDVHLMISPVDAYIDAYAQAGADVLTAHVEAGP--HIHRTLQAIRAAGMKSGVAINPGTP 124
>sp|Q8K940|RPE_BUCAP Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1 Length = 228
Score = 124 bits (310), Expect = 4e-28 Identities = 61/120 (50%), Positives = 83/120 (69%), Gaps = 1/120 (0%) Frame = +2
Query: 218 VSPSILSANFSKLGEQVKAVDEAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPL 394 ++ SILSA+F++LGE K +AG DWIH DVMD +VPN+T+GP+++ ALR +P+ Sbjct: 6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPI 65
Query: 395 DVHLMIVEPEQRVPDFVKAGADIVSVHCEQSSTIHLHRTLNQIKSLGAKAGVVLNPGTPL 574 DVHLM+ + +P F +AGAD ++ H E ST H+ RTLN IK G KAG+ LNP T L Sbjct: 66 DVHLMVKPVDNLIPQFAEAGADFITFHPE--STDHIDRTLNLIKECGCKAGLALNPATSL 123
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q10R77 |
Definition |
tr|Q10R77|Q10R77_ORYSJ Os03g0169100 protein OS=Oryza sativa subsp. japonica |
Align length |
135 |
Score (bit) |
259.0 |
E-value |
1.0e-67 |
Report |
|