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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962493
Clone id TST39A01NGRL0014_A10
Library
Length 592
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_A10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCGTGCTCTCTCTGTTTATTACTGGGCTTTAGCTTCTTGAATGTGCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTAATTAGGGGTCTTCCTGCATGCCCATTTTCTTTTCGA
TCGCTGTTATCTTCTCAACATTTTTGCACGATCTGATCCTGTTGATTCGTCTTTCAGCTC
AACTTGTGTCCTCTCCAACTCCTACTTTCATCTTTCCTTCCGGCATGGCTGCCTCCGCCA
CATGCAGCGTCCCCATCAGAATGATTGGCATGCCTTGTGCTAAATATCAAAGAAATCTCC
AGTCCCAGAATGTAGTCTCGTCCTCTCGATTCACCCACAGCCACATCATTAAGGCTGCAC
AGACGCAGTCCGCTCCTCGCACACGCGAAACGGAGAACGTATCGCTCAAGGGTGATGCAG
AGGATGCTGCCTTGAAGGTATTTGCTGATGATACAAAAGGAATTGTATGCTATCGAACAG
AGTCTGGTGAAATCGTTTGTGAGGGCATGGATGAGGGCCCTCAGTTCTATCCTCCTTCTG
GGGCGAACTTCTACATGGCCCGATACTCGGAGCTGCTGCTATCCTTCCCTCT
■■Homology search results ■■ -
sp_hit_id O57030
Definition sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subunit beta OS=Spodoptera littoralis nuclear polyhedrosis virus
Align length 51
Score (bit) 30.8
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962493|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_A10, 5'
         (592 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subuni...    31   5.3  
sp|Q96L62|ENH4_HUMAN HERV-H_1q41 provirus ancestral Env polyprot...    31   5.3  
sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapie...    30   6.9  
sp|A0L0R3|PANC_SHESA Pantothenate synthetase OS=Shewanella sp. (...    30   6.9  
sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamic...    30   6.9  
sp|Q8NEY1|NAV1_HUMAN Neuron navigator 1 OS=Homo sapiens GN=NAV1 ...    30   7.0  
sp|Q9N2K0|ENH1_HUMAN HERV-H_2q24.3 provirus ancestral Env polypr...    30   7.0  
sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens GN...    30   9.1  

>sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subunit
           beta OS=Spodoptera littoralis nuclear polyhedrosis virus
           GN=LEF-8 PE=3 SV=1
          Length = 909

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -3

Query: 341 AVGESRGRDYILGLEISLIFST------RHANHSDGDAACGGGSHAGRKDE 207
           AV ES GR  +L   + ++F T      R    S GDA CGGG   G +D+
Sbjct: 50  AVDESTGR-CVLHRCVLIVFGTWLDKKFRKKEFSGGDATCGGGGGDGDQDQ 99


>sp|Q96L62|ENH4_HUMAN HERV-H_1q41 provirus ancestral Env polyprotein
           OS=Homo sapiens PE=3 SV=1
          Length = 402

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -2

Query: 588 GRIAAAPSIGPCRSSPQKEDRTEGPHPC-----PHKRFHQTLFDSIQFLLYHQQ--IPSR 430
           GR     S+ P  SSP   D    P  C     P     + L D+ +FL++H+    PS 
Sbjct: 230 GRHVPCISLHPWLSSPCSSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHENRTFPST 289

Query: 429 QHPLHHP 409
           Q P   P
Sbjct: 290 QLPHQSP 296


>sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens
            GN=UHRF1BP1L PE=1 SV=2
          Length = 1464

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +3

Query: 294  NLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAAL-KVFADDTKGIVC 470
            N  S N   S   +H  +      +SA  T   + +S      D  L K+  D++ G+V 
Sbjct: 926  NHMSDNRSMSVDLSHIPLKDPLLFKSASDTNLQKGISFMDYLSDKHLGKISEDESSGLV- 984

Query: 471  YRTESGEIVCEGMDEGPQFYPPSGA 545
            Y++ SGEI  E  D+   FY  S +
Sbjct: 985  YKSGSGEIGSETSDKKDSFYTDSSS 1009


>sp|A0L0R3|PANC_SHESA Pantothenate synthetase OS=Shewanella sp.
           (strain ANA-3) GN=panC PE=3 SV=1
          Length = 281

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 162 LIRLSAQLVSSPTPTFIFPSGMAASATCSVP 254
           L    A+L+ +PTPT I+P G+A      VP
Sbjct: 82  LTAAGAELLFTPTPTVIYPKGLAQQTYVEVP 112


>sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamicum
           GN=pyk PE=1 SV=1
          Length = 475

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +3

Query: 381 TRETENVSLKGDAEDAAL--KVFADDTK-GIVCYRTESGEIVCEGMDEGP 521
           T +  + + K  A+DA    ++  DD K G+VC   E  +++CE ++ GP
Sbjct: 101 THDRVSTTYKNLAKDAKPGDRLLVDDGKVGLVCVSVEGNDVICEVVEGGP 150


>sp|Q8NEY1|NAV1_HUMAN Neuron navigator 1 OS=Homo sapiens GN=NAV1 PE=1
            SV=2
          Length = 1877

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = -2

Query: 576  AAPSIGPCRSSPQKEDRTEGP-HPCPHKR-FH 487
            A+PSI    SS    D TEGP HP PH R FH
Sbjct: 1264 ASPSIKSSTSSSVGTDVTEGPAHPAPHTRLFH 1295


>sp|Q9N2K0|ENH1_HUMAN HERV-H_2q24.3 provirus ancestral Env
           polyprotein OS=Homo sapiens PE=2 SV=1
          Length = 584

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
 Frame = -2

Query: 588 GRIAAAPSIGPCRSSPQKEDRTEGPHPC-----PHKRFHQTLFDSIQFLLYHQQ--IPSR 430
           GR     S+ P  SSP   D    P  C     P     + L D+ +FL++H+    PS 
Sbjct: 230 GRHLPCISLHPWLSSPCSSDSPPRPSSCLLIPSPENNSERLLVDTRRFLIHHENRTFPST 289

Query: 429 QHPLHHP 409
           Q P   P
Sbjct: 290 QLPHQSP 296


>sp|Q9UPW0|FOXJ3_HUMAN Forkhead box protein J3 OS=Homo sapiens
           GN=FOXJ3 PE=1 SV=1
          Length = 622

 Score = 30.0 bits (66), Expect = 9.1
 Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -2

Query: 543 PQKEDRTEGPHPCPHKRFHQTLFDSIQFLLYHQQIPS-RQHPLHHP 409
           PQ   R+  PHP PH + H  L         H Q PS  QH  HHP
Sbjct: 391 PQHPQRS--PHPAPHPQQHSQLQSP------HPQHPSPHQHIQHHP 428
tr_hit_id A7P6B3
Definition tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 48
Score (bit) 55.5
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962493|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_A10, 5'
         (592 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome ...    55   2e-06
tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subs...    55   3e-06
tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella paten...    54   9e-06
tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea m...    53   1e-05
tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medic...    52   3e-05
tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    51   6e-05
tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea...    51   6e-05
tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|Q0DX03|Q0DX03_ORYSJ Os02g0782900 protein OS=Oryza sativa subs...    48   5e-04
tr|Q94HC7|Q94HC7_ORYSJ Putative uncharacterized protein OSJNBb00...    47   6e-04
tr|B8BGM6|B8BGM6_ORYSI Putative uncharacterized protein OS=Oryza...    47   6e-04
tr|Q6K7E4|Q6K7E4_ORYSJ Putative uncharacterized protein OJ1311_D...    46   0.002
tr|A3AC06|A3AC06_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.1  
tr|B0WC24|B0WC24_CULQU Putative uncharacterized protein OS=Culex...    37   1.1  
tr|B8CTC7|B8CTC7_9GAMM Pantoate-beta-alanine ligase:Cytidyltrans...    34   5.4  
tr|A8H0D3|A8H0D3_SHEPA Pantoate--beta-alanine ligase OS=Shewanel...    33   9.2  
tr|A6UHC7|A6UHC7_SINMW Outer membrane autotransporter barrel dom...    33   9.2  

>tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034001001
           PE=4 SV=1
          Length = 105

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +3

Query: 435 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMARYSELL 578
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y  R +E++
Sbjct: 25  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHPRDAEII 72


>tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043719 PE=4 SV=1
          Length = 133

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/48 (52%), Positives = 32/48 (66%)
 Frame = +3

Query: 435 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMARYSELL 578
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y  R +E++
Sbjct: 53  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHPRDAEII 100


>tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subsp.
           japonica GN=P0698A06.24 PE=2 SV=1
          Length = 127

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 351 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 524
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019601 PE=4 SV=1
          Length = 133

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 351 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 524
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21995 PE=4 SV=1
          Length = 128

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 351 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 524
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 24  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 81


>tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171438 PE=4 SV=1
          Length = 153

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 29/86 (33%), Positives = 43/86 (50%)
 Frame = +3

Query: 276 CAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAALKVFADDT 455
           CA    ++ S+N   S R     ++  +   S    R +  V   G   +    VF D++
Sbjct: 12  CASPPISISSRNPPPSQRLATVKMVPKSLRLSI--CRASSEVGPAGVIPEKESTVFKDES 69

Query: 456 KGIVCYRTESGEIVCEGMDEGPQFYP 533
           +GI+CY  E+G+I CEG DEGP F P
Sbjct: 70  QGIICYYDENGDITCEGWDEGPHFQP 95


>tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 130

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +3

Query: 270 MPCAKYQRNLQSQNVVSSSRFTHSHI-IKAAQTQSAPRTRETENVSLKGDAEDAALKVFA 446
           M C +Y  ++    +  +SR T +   I      S+   +++ +VS  G A     KV+ 
Sbjct: 6   MRCYRYSPSVAMVPMRKTSRTTMTRASISTDGCSSSEPKKKSHSVSFAGKAN----KVYE 61

Query: 447 DDTKGIVCYRTESGEIVCEGMDEGPQ 524
           D   GI+CY  E+GE+VCEG+DEGP+
Sbjct: 62  DKDMGILCYTDENGELVCEGLDEGPR 87


>tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82514 PE=4 SV=1
          Length = 104

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 23/53 (43%), Positives = 30/53 (56%)
 Frame = +3

Query: 405 LKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMAR 563
           +K    +   +VF D++ GIVCY  E GEI CEG DEGP F P     + M +
Sbjct: 9   MKNSHRNLPEQVFKDESNGIVCYVNEDGEITCEGWDEGPHFIPEPEKGYTMRK 61


>tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_163485 PE=4 SV=1
          Length = 151

 Score = 52.4 bits (124), Expect = 2e-05
 Identities = 32/107 (29%), Positives = 50/107 (46%)
 Frame = +3

Query: 243 CSVPIRMIGMPCAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAE 422
           CS P+ ++     K     +S  V  +S+  HS   +A+   S+ +    E  +      
Sbjct: 12  CSSPVVLVSSGVVK-----KSATVQLASQCRHSLACRASSNGSSVKASREEGST------ 60

Query: 423 DAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMAR 563
            +   VF D T+GIVCY ++ GE+ CEG DEG  F P     F + +
Sbjct: 61  -STPPVFEDSTEGIVCYISKEGEVTCEGWDEGGHFQPEPQNQFTLRK 106


>tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
 Frame = +3

Query: 372 APRTRETEN-VSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQF 527
           AP+ + T   V LK  A      V+ D+++GI+CY+ ESGEI+CEG DEGP +
Sbjct: 35  APKKKSTVGPVLLKITASIKNKVVYEDESQGIICYQDESGEIICEGYDEGPSY 87