DK962494 |
Clone id |
TST39A01NGRL0014_A11 |
Library |
TST39 |
Length |
661 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_A11. 5' end sequence. |
Accession |
DK962494 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2963Contig1 |
Sequence |
AGAACTCAAAATCGCGAATCCGAAGCTCCCCATAGTCTGCCGAATCCATCTCTCTATTGC TCACCACTAGATTCCATGGCCTCTGAAGCTGCAGAAAACCCCATCGTAGCCGCTCCTGCT GCTGAGGTGAAAGCGGATGAGAAACTTGTGAAGAAAGCCAAGGTTCCCAAGGAGAAGAAG CCTCGTGCGCCACGGGGCCCTGCCACTCATCCTCCTTACCTTGAGATGATTGTGGAGGCC GTTGCTGCCCTCAAGGAGAGGACGGGCTCTAGCCAGCCTGCTATAGCAAAGTACCTTGAC GGAAAATACAACACTGGCCTTCCACCTAACTTTAAGAAGCAGCTGTCTGTACAACTGAAG AAGTTTGTGGAGAAGAAGAAGCTAATTCAGATTAAGCACTCTTTCAAGATTGCGGATGGG GTAAAGAAGCCTGTGGCAATGAAGAAACCGGTTGTGCCAAAGAAACCAGCAATGGTGAAA TCAGCTAAGCCCAAGTCAGTGAAGTCAAAGCCGAAGGTGGCTGCAAAGGCGAAGTCTGTG AAGCCAAAGGTAGCTGCAAAGCCCAAGGCTGTGGTGCCTGCAATGGCAGCTCCTAAGAAG GCTTCACTTAAGAAAGTCCCTGCTGTTAGGAGGGTTCCTGTACCAAGGAAAGTACTTGCC C |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P37218 |
Definition |
sp|P37218|H1_SOLLC Histone H1 OS=Solanum lycopersicum |
Align length |
72 |
Score (bit) |
85.1 |
E-value |
3.0e-16 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SF83 |
Definition |
tr|A9SF83|A9SF83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
73 |
Score (bit) |
103.0 |
E-value |
9.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962494|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_A11, 5' (661 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SF83|A9SF83_PHYPA Predicted protein OS=Physcomitrella paten... 103 9e-21 tr|A9RTA3|A9RTA3_PHYPA Histone H1 linker OS=Physcomitrella paten... 100 6e-20 tr|A9RX26|A9RX26_PHYPA Histone H1 linker OS=Physcomitrella paten... 99 2e-19 tr|A9RDT0|A9RDT0_PHYPA Histone H1 linker OS=Physcomitrella paten... 99 2e-19 tr|A7Q0I8|A7Q0I8_VITVI Chromosome chr7 scaffold_42, whole genome... 96 3e-18 tr|A5BS12|A5BS12_VITVI Putative uncharacterized protein OS=Vitis... 96 3e-18 tr|Q8W120|Q8W120_MAIZE Histone H1-like protein OS=Zea mays GN=ho... 94 6e-18 tr|B6T1D7|B6T1D7_MAIZE Putative uncharacterized protein OS=Zea m... 94 6e-18 tr|B6SP93|B6SP93_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 94 6e-18 tr|B4FQA5|B4FQA5_MAIZE Putative uncharacterized protein OS=Zea m... 94 6e-18 tr|Q7XM53|Q7XM53_ORYSJ OSJNBb0018J12.6 protein (Putative unchara... 91 5e-17 tr|Q0JEK3|Q0JEK3_ORYSJ Os04g0253000 protein (Fragment) OS=Oryza ... 91 5e-17 tr|Q01M78|Q01M78_ORYSA H0616A11.1 protein OS=Oryza sativa GN=H06... 91 5e-17 tr|B7EMI6|B7EMI6_ORYSJ cDNA clone:J033052L06, full insert sequen... 91 5e-17 tr|A2XR29|A2XR29_ORYSI Putative uncharacterized protein OS=Oryza... 91 5e-17 tr|Q1XG59|Q1XG59_CRYJA Putative histone H1 OS=Cryptomeria japoni... 91 6e-17 tr|Q8LK07|Q8LK07_MAIZE Histone H1 OS=Zea mays GN=hon101 PE=2 SV=1 90 1e-16 tr|B6T485|B6T485_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 90 1e-16 tr|A7NX10|A7NX10_VITVI Chromosome chr5 scaffold_2, whole genome ... 90 1e-16 tr|Q851P9|Q851P9_ORYSJ Os03g0799000 protein OS=Oryza sativa subs... 89 2e-16 tr|B6T4M4|B6T4M4_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 89 2e-16 tr|B6T2X7|B6T2X7_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 89 2e-16 tr|B6SYW3|B6SYW3_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 89 2e-16 tr|A2XMY6|A2XMY6_ORYSI Putative uncharacterized protein OS=Oryza... 89 2e-16 tr|Q676W4|Q676W4_HYAOR Histone H1 (Fragment) OS=Hyacinthus orien... 88 4e-16 tr|A9P2F7|A9P2F7_PICSI Putative uncharacterized protein OS=Picea... 88 4e-16 tr|Q94EU7|Q94EU7_FRILI Histone-like protein (Fragment) OS=Fritil... 87 7e-16 tr|Q94EU5|Q94EU5_FRILI Histone-like protein (Fragment) OS=Fritil... 87 7e-16 tr|Q94EU3|Q94EU3_FRILI Histone-like protein (Fragment) OS=Fritil... 87 7e-16 tr|Q94EU2|Q94EU2_FRILI Histone-like protein (Fragment) OS=Fritil... 87 7e-16
>tr|A9SF83|A9SF83_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_232290 PE=3 SV=1 Length = 292
Score = 103 bits (257), Expect = 9e-21 Identities = 47/73 (64%), Positives = 61/73 (83%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA+HP YL M+VEA+ ALKERTGSSQ AIAKYL+ KY TGLPPNFKK L++QL+ + Sbjct: 57 PASHPSYLLMVVEAIGALKERTGSSQYAIAKYLEDKYKTGLPPNFKKTLTIQLRNLTKSG 116
Query: 379 KLIQIKHSFKIAD 417 KL+++K+SFK++D Sbjct: 117 KLVKVKNSFKLSD 129
>tr|A9RTA3|A9RTA3_PHYPA Histone H1 linker OS=Physcomitrella patens subsp. patens GN=HON1501 PE=3 SV=1 Length = 285
Score = 100 bits (250), Expect = 6e-20 Identities = 47/73 (64%), Positives = 59/73 (80%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA+HP YL M EA+AALKERTGSSQ AIAKYL+ KY TGLPPNFKK L+ QL+ + Sbjct: 72 PASHPTYLLMATEAIAALKERTGSSQYAIAKYLEDKYKTGLPPNFKKMLTTQLRNLTKAG 131
Query: 379 KLIQIKHSFKIAD 417 KL+++K+SFK++D Sbjct: 132 KLVKVKNSFKLSD 144
>tr|A9RX26|A9RX26_PHYPA Histone H1 linker OS=Physcomitrella patens subsp. patens GN=HON1503 PE=3 SV=1 Length = 265
Score = 99.4 bits (246), Expect = 2e-19 Identities = 45/73 (61%), Positives = 60/73 (82%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA+HP Y+ M+VEA+ ALKERTGSSQ AIAKYL+ KY TGL PNFKK L++QL+ + Sbjct: 68 PASHPTYMLMVVEAIGALKERTGSSQYAIAKYLEDKYKTGLAPNFKKMLTIQLRNLTKGG 127
Query: 379 KLIQIKHSFKIAD 417 KL+++K+SFK++D Sbjct: 128 KLVKVKNSFKLSD 140
>tr|A9RDT0|A9RDT0_PHYPA Histone H1 linker OS=Physcomitrella patens subsp. patens GN=HON1504 PE=3 SV=1 Length = 270
Score = 99.4 bits (246), Expect = 2e-19 Identities = 45/72 (62%), Positives = 61/72 (84%) Frame = +1
Query: 202 ATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKKK 381 A+HP Y+ M+VEA+ ALKERTGSSQ AIAKYL+ KYNTGLPPNF+K LS QL+ + +K Sbjct: 66 ASHPTYMMMVVEAIGALKERTGSSQYAIAKYLEDKYNTGLPPNFEKTLSTQLRNLSKAEK 125
Query: 382 LIQIKHSFKIAD 417 L+++K+SFK+++ Sbjct: 126 LVKVKNSFKLSN 137
>tr|A7Q0I8|A7Q0I8_VITVI Chromosome chr7 scaffold_42, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00028065001 PE=3 SV=1 Length = 186
Score = 95.5 bits (236), Expect = 3e-18 Identities = 43/69 (62%), Positives = 59/69 (85%) Frame = +1
Query: 208 HPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKKKLI 387 HPPY +MI EA+++LKERTGSSQ AI+K+++ KY+ LPPNF K LSVQLK+FV+ +KL+ Sbjct: 16 HPPYFQMICEAISSLKERTGSSQQAISKFIEEKYSGTLPPNFNKLLSVQLKRFVKSEKLV 75
Query: 388 QIKHSFKIA 414 ++K+SFK A Sbjct: 76 KVKNSFKTA 84
>tr|A5BS12|A5BS12_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_002250 PE=3 SV=1 Length = 361
Score = 95.5 bits (236), Expect = 3e-18 Identities = 43/69 (62%), Positives = 59/69 (85%) Frame = +1
Query: 208 HPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKKKLI 387 HPPY +MI EA+++LKERTGSSQ AI+K+++ KY+ LPPNF K LSVQLK+FV+ +KL+ Sbjct: 132 HPPYFQMICEAISSLKERTGSSQQAISKFIEEKYSGTLPPNFNKLLSVQLKRFVKSEKLV 191
Query: 388 QIKHSFKIA 414 ++K+SFK A Sbjct: 192 KVKNSFKTA 200
>tr|Q8W120|Q8W120_MAIZE Histone H1-like protein OS=Zea mays GN=hon102 PE=2 SV=1 Length = 244
Score = 94.4 bits (233), Expect = 6e-18 Identities = 45/71 (63%), Positives = 56/71 (78%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA HPPY EMIVEA+AALKER GSS AI+KY++GK+ LP NF+KQL+VQLKK Sbjct: 52 PAAHPPYAEMIVEAIAALKERKGSSSVAISKYVEGKHGGKLPTNFRKQLTVQLKKLAAAG 111
Query: 379 KLIQIKHSFKI 411 KL ++K+SFK+ Sbjct: 112 KLTRVKNSFKL 122
>tr|B6T1D7|B6T1D7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 246
Score = 94.4 bits (233), Expect = 6e-18 Identities = 45/71 (63%), Positives = 56/71 (78%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA HPPY EMIVEA+AALKER GSS AI+KY++GK+ LP NF+KQL+VQLKK Sbjct: 52 PAAHPPYAEMIVEAIAALKERKGSSSVAISKYVEGKHGGKLPTNFRKQLTVQLKKLAAAG 111
Query: 379 KLIQIKHSFKI 411 KL ++K+SFK+ Sbjct: 112 KLTRVKNSFKL 122
>tr|B6SP93|B6SP93_MAIZE Histone H1 OS=Zea mays PE=2 SV=1 Length = 246
Score = 94.4 bits (233), Expect = 6e-18 Identities = 45/71 (63%), Positives = 56/71 (78%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA HPPY EMIVEA+AALKER GSS AI+KY++GK+ LP NF+KQL+VQLKK Sbjct: 52 PAAHPPYAEMIVEAIAALKERKGSSSVAISKYVEGKHGGKLPTNFRKQLTVQLKKLAAAG 111
Query: 379 KLIQIKHSFKI 411 KL ++K+SFK+ Sbjct: 112 KLTRVKNSFKL 122
>tr|B4FQA5|B4FQA5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 244
Score = 94.4 bits (233), Expect = 6e-18 Identities = 45/71 (63%), Positives = 56/71 (78%) Frame = +1
Query: 199 PATHPPYLEMIVEAVAALKERTGSSQPAIAKYLDGKYNTGLPPNFKKQLSVQLKKFVEKK 378 PA HPPY EMIVEA+AALKER GSS AI+KY++GK+ LP NF+KQL+VQLKK Sbjct: 52 PAAHPPYAEMIVEAIAALKERKGSSSVAISKYVEGKHGGKLPTNFRKQLTVQLKKLAAAG 111
Query: 379 KLIQIKHSFKI 411 KL ++K+SFK+ Sbjct: 112 KLTRVKNSFKL 122
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