DK962499 |
Clone id |
TST39A01NGRL0014_A16 |
Library |
TST39 |
Length |
609 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_A16. 5' end sequence. |
Accession |
DK962499 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL418Contig1 |
Sequence |
CGAAGCTTCTGCTAAGTAGCAGAAGATAGTATCTGGAATCCAGAGCAAGACATGGATGCT CTGGCCATGGCAGGCGCCTCTTCGTCTACCACGTCCTCATCCCTTATCGCCAGAGCCTTC CACTCACAGCGCCTTTCCAGGCTTCCCTCGCAGCGCGGCTATGTCTTCCTTCCCTTATCT TCCTGCCGAGCAAGGCCCATCTCAATCTCTGTCTCAGCATGGCAACATCGTCCCTCCTAC ACTTTCAGAGCATCAGCTCAGGCGGACGCCAAGGTTGTAAATGAGCAACAGGATGCCGAA GCTAGCGAGTCAGAGTATGAAAGCACAGATGAAGAAAGTGATGGGTCTGCAGCAGAAGAA GCTTCCTTACCTAGTGTGGAGGCAATGCTGAAGAAATACAGGGAGGCATTGTCGAATAAT GATGAAGCAGCTCTGGAAGAGCTTGATGTCAAGTTTCAGCAGCTGGAGAAGGAAAAGAAC ATGTACGCAAAGCAGGTCTCTACCCTCAACGACGAGGTTCTTTCACTCAAAGAGCGACTT CTGCGGTTGAATGCAGATTTTGACAATTTTAGGAAAAGGTCTGAGAGAGACAGGATCGCC GTTGGCACC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8XIT0 |
Definition |
sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens |
Align length |
81 |
Score (bit) |
47.8 |
E-value |
5.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962499|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_A16, 5' (609 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens GN=... 48 5e-05 sp|Q892Q9|GRPE_CLOTE Protein grpE OS=Clostridium tetani GN=grpE ... 47 6e-05 sp|Q0TNS6|GRPE_CLOP1 Protein grpE OS=Clostridium perfringens (st... 46 1e-04 sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair ra... 45 2e-04 sp|Q7V9C9|GRPE_PROMM Protein grpE OS=Prochlorococcus marinus (st... 45 2e-04 sp|Q0SRE2|GRPE_CLOPS Protein grpE OS=Clostridium perfringens (st... 45 3e-04 sp|Q661A2|GRPE_BORGA Protein grpE OS=Borrelia garinii GN=grpE PE... 41 0.004 sp|Q7UA77|GRPE_SYNPX Protein grpE OS=Synechococcus sp. (strain W... 41 0.006 sp|A2BNE2|GRPE_PROMS Protein grpE OS=Prochlorococcus marinus (st... 41 0.006 sp|A6LRN3|GRPE_CLOB8 Protein grpE OS=Clostridium beijerinckii (s... 41 0.006 sp|A4IR32|GRPE_GEOTN Protein grpE OS=Geobacillus thermodenitrifi... 40 0.007 sp|Q6G1E4|GRPE_BARQU Protein grpE OS=Bartonella quintana GN=grpE... 40 0.007 sp|A3PA63|GRPE_PROM0 Protein grpE OS=Prochlorococcus marinus (st... 40 0.009 sp|A4IX27|GRPE_FRATW Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|P48204|GRPE_FRATU Protein grpE OS=Francisella tularensis GN=g... 40 0.009 sp|Q5NFG6|GRPE_FRATT Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|Q0BLK5|GRPE_FRATO Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|A0Q7F1|GRPE_FRATN Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|Q2A329|GRPE_FRATH Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|A7NCM8|GRPE_FRATF Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|Q14GW8|GRPE_FRAT1 Protein grpE OS=Francisella tularensis subs... 40 0.009 sp|Q0SMY9|GRPE_BORAP Protein grpE OS=Borrelia afzelii (strain PK... 40 0.009 sp|Q46I46|GRPE_PROMT Protein grpE OS=Prochlorococcus marinus (st... 40 0.012 sp|Q31DG8|GRPE_PROM9 Protein grpE OS=Prochlorococcus marinus (st... 40 0.012 sp|Q9KD73|GRPE_BACHD Protein grpE OS=Bacillus halodurans GN=grpE... 40 0.012 sp|A8G203|GRPE_PROM2 Protein grpE OS=Prochlorococcus marinus (st... 39 0.016 sp|A2BTV4|GRPE_PROM5 Protein grpE OS=Prochlorococcus marinus (st... 39 0.021 sp|P30726|GRPE_CLOAB Protein grpE OS=Clostridium acetobutylicum ... 39 0.021 sp|Q59978|GRPE_SYNY3 Protein grpE OS=Synechocystis sp. (strain P... 39 0.027 sp|Q7V3Q4|GRPE_PROMP Protein grpE OS=Prochlorococcus marinus sub... 39 0.027
>sp|Q8XIT0|GRPE_CLOPE Protein grpE OS=Clostridium perfringens GN=grpE PE=3 SV=1 Length = 208
Score = 47.8 bits (112), Expect = 5e-05 Identities = 23/81 (28%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Frame = +1
Query: 370 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 546 P+++ +++ E + +++ EEL Q L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----QALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 547 LNADFDNFRKRSERDRIAVGT 609 ++A+++N+RKR+++++ + T Sbjct: 84 ISAEYENYRKRTDKEKERIYT 104
>sp|Q892Q9|GRPE_CLOTE Protein grpE OS=Clostridium tetani GN=grpE PE=3 SV=1 Length = 200
Score = 47.4 bits (111), Expect = 6e-05 Identities = 29/81 (35%), Positives = 51/81 (62%), Gaps = 13/81 (16%) Frame = +1
Query: 391 KKYREALSNNDEAALEELDV----KFQQLEK--EKNMYAKQVSTL-------NDEVLSLK 531 KK + + +E LEE +V +F++L+K E+N + +STL N+E+ +LK Sbjct: 11 KKVEDLEMDLNEEELEESEVNEDKEFEELDKSEEENEVEELISTLKDENEKLNNEMEALK 70
Query: 532 ERLLRLNADFDNFRKRSERDR 594 +RLLR ++DN+RKR++R++ Sbjct: 71 DRLLRTTGEYDNYRKRTDREK 91
>sp|Q0TNS6|GRPE_CLOP1 Protein grpE OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=grpE PE=3 SV=1 Length = 208
Score = 46.2 bits (108), Expect = 1e-04 Identities = 22/81 (27%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Frame = +1
Query: 370 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 546 P+++ +++ E + +++ EEL + L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----KALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 547 LNADFDNFRKRSERDRIAVGT 609 ++A+++N+RKR+++++ + T Sbjct: 84 ISAEYENYRKRTDKEKERIYT 104
>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase OS=Aquifex aeolicus GN=rad50 PE=3 SV=1 Length = 978
Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 8/84 (9%) Frame = +1
Query: 367 LPSVEAMLKKYREALSNNDEAA--------LEELDVKFQQLEKEKNMYAKQVSTLNDEVL 522 L ++E ++K RE L + + A +EE+D K +L+ KN K+++ L DE+ Sbjct: 253 LENLEKEVEKLREKLEFSRKVAPYVPIAKRIEEIDKKLTELKVRKNKLTKELAVLKDELS 312
Query: 523 SLKERLLRLNADFDNFRKRSERDR 594 +E L R+ A+ + F++ ER++ Sbjct: 313 FAQEELNRIEAEKEKFKEEKEREK 336
>sp|Q7V9C9|GRPE_PROMM Protein grpE OS=Prochlorococcus marinus (strain MIT 9313) GN=grpE PE=3 SV=1 Length = 237
Score = 45.4 bits (106), Expect = 2e-04 Identities = 25/64 (39%), Positives = 38/64 (59%) Frame = +1
Query: 403 EALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRS 582 E S+ A L + + + QQLE+E S+L +E +L+ + +R+ ADFDNFRKR Sbjct: 33 EGQSSAQSAPLADNEARLQQLEQEH-------SSLREEHETLRSQYMRIAADFDNFRKRQ 85
Query: 583 ERDR 594 RD+ Sbjct: 86 SRDQ 89
>sp|Q0SRE2|GRPE_CLOPS Protein grpE OS=Clostridium perfringens (strain SM101 / Type A) GN=grpE PE=3 SV=1 Length = 208
Score = 45.1 bits (105), Expect = 3e-04 Identities = 21/81 (25%), Positives = 53/81 (65%), Gaps = 1/81 (1%) Frame = +1
Query: 370 PSVEAMLKKYREALSNNDEAA-LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 546 P+++ +++ E + +++ EEL + L++E M+ + L +E+ +LK+RLLR Sbjct: 28 PNIDEEVEEVSEDIKADEKVIDFEEL----KALKEENTMFKSKTKKLENELEALKDRLLR 83
Query: 547 LNADFDNFRKRSERDRIAVGT 609 ++++++N+RKR+++++ + T Sbjct: 84 ISSEYENYRKRTDKEKERIYT 104
>sp|Q661A2|GRPE_BORGA Protein grpE OS=Borrelia garinii GN=grpE PE=3 SV=1 Length = 187
Score = 41.2 bits (95), Expect = 0.004 Identities = 21/65 (32%), Positives = 40/65 (61%), Gaps = 4/65 (6%) Frame = +1
Query: 412 SNNDEAALEELDVKFQQLEKEKNMYA----KQVSTLNDEVLSLKERLLRLNADFDNFRKR 579 + ND + D K + +K++N+ K+++ L +E+ +LK+ LR A+F+NFRKR Sbjct: 6 TKNDAEKNNKQDNKSTKSQKKENLNLVNSDKKITELENEISNLKDLYLRKQAEFENFRKR 65
Query: 580 SERDR 594 E+++ Sbjct: 66 LEKEK 70
>sp|Q7UA77|GRPE_SYNPX Protein grpE OS=Synechococcus sp. (strain WH8102) GN=grpE PE=3 SV=1 Length = 218
Score = 40.8 bits (94), Expect = 0.006 Identities = 23/57 (40%), Positives = 33/57 (57%) Frame = +1
Query: 424 EAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRSERDR 594 E +L + + QQLE E + TL E +L+ + +R+ ADFDNFRKR RD+ Sbjct: 36 EGSLTDPAERLQQLEHE-------LQTLKQEHETLQSQYMRIAADFDNFRKRQSRDQ 85
>sp|A2BNE2|GRPE_PROMS Protein grpE OS=Prochlorococcus marinus (strain AS9601) GN=grpE PE=3 SV=1 Length = 239
Score = 40.8 bits (94), Expect = 0.006 Identities = 19/60 (31%), Positives = 37/60 (61%) Frame = +1
Query: 415 NNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRSERDR 594 NN+ ++ + ++ ++L+ + ++ L E +LK + +R++ADFDNFRKR RD+ Sbjct: 36 NNELSSQKTEEINTEELKNSISNNDARLEQLEKEHETLKNQYVRISADFDNFRKRQSRDQ 95
>sp|A6LRN3|GRPE_CLOB8 Protein grpE OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=grpE PE=3 SV=1 Length = 207
Score = 40.8 bits (94), Expect = 0.006 Identities = 25/63 (39%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +1
Query: 412 SNNDEAALEELD--VKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRLNADFDNFRKRSE 585 S N EAA E+ + VK Q+ E +K L +E+ + K+RLLRL A++DN+RKR+ Sbjct: 45 SENIEAAEEDQEDLVKNQEEENKK---------LREELDATKDRLLRLTAEYDNYRKRTA 95
Query: 586 RDR 594 +++ Sbjct: 96 KEK 98
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NPB5 |
Definition |
tr|A9NPB5|A9NPB5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
78 |
Score (bit) |
79.3 |
E-value |
2.0e-13 |
Report |
|