DK962502 |
Clone id |
TST39A01NGRL0014_A19 |
Library |
TST39 |
Length |
657 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_A19. 5' end sequence. |
Accession |
DK962502 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1286Contig1 |
Sequence |
AAGCCATTACACAGTATGTTGAAATTGTGATGCCATACGAAAAGCAAGGGAAGCTGGAAC GAATTTTACGCACTCAGGAACCTGGCTCAAAGATCATAATTTTTTGCTCAACCAAGAAAA TGTGTGATCAACTTGCTCGGAGTCTAGGTCGTGGGTTTGGAGCTGCAGCTATTCATGGTG ACAAATCACAGGCTGAAAGAGACCATGTTCTTGCACAATTCAAAGCAGGAAGAGCCCCAA TTTTGGTTGCCACTGATGTTGCTGCTCGAGGACTTGACATCAAGGATATCAGGGTGGTTG TCAACTTCGATTTTCCAACTGGTGTTGAAGACTACGTACATCGAATTGGTCGCACTGGTC GAGCTGGAGCAACTGGCATTGCCTACTCCTTTTTCACAGAGCAGGATGGAAAGCATGCTA AGGAGCTTATTGGGGTCTTGGAGGGGGCAAACCAGAAGGTTCCAATGGAACTCCGTGATT TTGCAGCCAAGTCGTTTTATCCCAAGAGAGGGGGGCGCTGGGAAGCAGGGCCTGCTGGTG GGCGAGATGGTGGCTATGCTGGTGGTTTTGGGGGCAGTATTGGTGGACGGGGAGGTGGTG GTCGTAGTGATGGTTTTGGAGGCAGGGGAGCATGGGGCTCAAATGGAGGTCATTTTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46942 |
Definition |
sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris |
Align length |
163 |
Score (bit) |
233.0 |
E-value |
7.0e-61 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S1Y4 |
Definition |
tr|A9S1Y4|A9S1Y4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
176 |
Score (bit) |
247.0 |
E-value |
5.0e-64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962502|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_A19, 5' (657 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S1Y4|A9S1Y4_PHYPA Predicted protein OS=Physcomitrella paten... 247 5e-64 tr|A9SYT2|A9SYT2_PHYPA Predicted protein OS=Physcomitrella paten... 246 9e-64 tr|A7PM74|A7PM74_VITVI Chromosome chr14 scaffold_21, whole genom... 232 1e-59 tr|A7NVW1|A7NVW1_VITVI Chromosome chr5 scaffold_2, whole genome ... 232 2e-59 tr|Q2QZE8|Q2QZE8_ORYSJ Retrotransposon protein, putative, unclas... 229 9e-59 tr|Q0IR12|Q0IR12_ORYSJ Os11g0689400 protein OS=Oryza sativa subs... 229 9e-59 tr|B8AE58|B8AE58_ORYSI Putative uncharacterized protein OS=Oryza... 229 9e-59 tr|A3BQQ8|A3BQQ8_ORYSJ Putative uncharacterized protein OS=Oryza... 229 9e-59 tr|B8ADH5|B8ADH5_ORYSI Putative uncharacterized protein OS=Oryza... 228 2e-58 tr|B7EQA6|B7EQA6_ORYSJ cDNA clone:J023079L21, full insert sequen... 228 2e-58 tr|A2ZPS5|A2ZPS5_ORYSJ Putative uncharacterized protein OS=Oryza... 228 2e-58 tr|Q9SP26|Q9SP26_PEA P72 DEAD box protein OS=Pisum sativum PE=2 ... 217 6e-55 tr|Q2QKB1|Q2QKB1_WHEAT DEAD-box ATPase-RNA-helicase (Fragment) O... 217 6e-55 tr|B7EC00|B7EC00_ORYSJ cDNA clone:J013059F16, full insert sequen... 215 2e-54 tr|A2WR82|A2WR82_ORYSI Putative uncharacterized protein OS=Oryza... 211 4e-53 tr|A9RXX9|A9RXX9_PHYPA Predicted protein OS=Physcomitrella paten... 186 8e-46 tr|A8HPW8|A8HPW8_CHLRE Predicted protein (Fragment) OS=Chlamydom... 176 9e-43 tr|A2Q465|A2Q465_MEDTR Helicase, C-terminal OS=Medicago truncatu... 160 5e-38 tr|B8ADR3|B8ADR3_ORYSI Putative uncharacterized protein OS=Oryza... 159 1e-37 tr|B4FWP6|B4FWP6_MAIZE Putative uncharacterized protein OS=Zea m... 158 3e-37 tr|A9S9X0|A9S9X0_PHYPA Predicted protein OS=Physcomitrella paten... 158 3e-37 tr|A9V234|A9V234_MONBE p68DDX5 RNA helicase OS=Monosiga brevicol... 157 7e-37 tr|A7P6Q4|A7P6Q4_VITVI Chromosome chr9 scaffold_7, whole genome ... 156 1e-36 tr|B8LKZ7|B8LKZ7_PICSI Putative uncharacterized protein OS=Picea... 152 2e-35 tr|A7PCT3|A7PCT3_VITVI Chromosome chr17 scaffold_12, whole genom... 150 7e-35 tr|A4S5B0|A4S5B0_OSTLU Predicted protein (Fragment) OS=Ostreococ... 149 1e-34 tr|Q9Y1M2|Q9Y1M2_9ASCI P68 RNA helicase OS=Molgula occulta GN=bo... 149 1e-34 tr|Q7PZR7|Q7PZR7_ANOGA AGAP012045-PA OS=Anopheles gambiae GN=AGA... 149 1e-34 tr|B6KMF5|B6KMF5_TOXGO DEAD/DEAH box helicase, putative OS=Toxop... 148 3e-34 tr|B2G1Z4|B2G1Z4_ANOGA ENSANGG00000013284 protein (Fragment) OS=... 148 3e-34
>tr|A9S1Y4|A9S1Y4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_180402 PE=3 SV=1 Length = 675
Score = 247 bits (630), Expect = 5e-64 Identities = 122/176 (69%), Positives = 144/176 (81%), Gaps = 3/176 (1%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQ+VE+V+PYEKQ +LE+ILR+QEPGSKII+FCSTK+MCD L+R+LGR FGAAAIHGD Sbjct: 373 SITQHVEVVVPYEKQRRLEQILRSQEPGSKIIVFCSTKRMCDMLSRNLGRDFGAAAIHGD 432
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQ+ERD VL+QF+ GR PILVATDVAARGLDIKDIR VVN+DFPTGVEDYVH Sbjct: 433 KSQSERDFVLSQFRTGRTPILVATDVAARGLDIKDIRFVVNYDFPTGVEDYVHRIGRTGR 492
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKS---FYPKRGGRW 521 Y+FF+EQDGK+AKELI VLEGANQKVP EL+D A++ F + G RW Sbjct: 493 AGATGLAYTFFSEQDGKYAKELIKVLEGANQKVPQELKDIASRGGGMFKSRTGNRW 548
>tr|A9SYT2|A9SYT2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_107194 PE=3 SV=1 Length = 684
Score = 246 bits (628), Expect = 9e-64 Identities = 124/176 (70%), Positives = 144/176 (81%), Gaps = 3/176 (1%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQ VE+V+PYEKQ +LE+ILR+QEPGSKIIIFCSTK+MCD L+R+LGR FGAAAIHGD Sbjct: 368 SITQNVEVVVPYEKQRRLEQILRSQEPGSKIIIFCSTKRMCDTLSRNLGRDFGAAAIHGD 427
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQ+ERD VL+QF+ GR PILVATDVAARGLDIKDIRVVVN+DFPTGVEDYVH Sbjct: 428 KSQSERDFVLSQFRTGRTPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 487
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKS---FYPKRGGRW 521 Y+FF+EQDGK+AKELI VLEGANQKVP EL+D A++ F + G RW Sbjct: 488 AGATGLAYTFFSEQDGKYAKELIKVLEGANQKVPPELKDIASRGGGMFKGRMGNRW 543
>tr|A7PM74|A7PM74_VITVI Chromosome chr14 scaffold_21, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020710001 PE=3 SV=1 Length = 642
Score = 232 bits (592), Expect = 1e-59 Identities = 116/173 (67%), Positives = 136/173 (78%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 AITQYVE++ EK +LE+ILR+QEPGSKIIIFCSTKKMCDQLAR+L R FGAAAIHGD Sbjct: 359 AITQYVEVLPYMEKHKRLEQILRSQEPGSKIIIFCSTKKMCDQLARNLTRPFGAAAIHGD 418
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQ ERD+VL QF+ GR+P+LVATDVAARGLDIKDIRVV+N+DFPTGVEDYVH Sbjct: 419 KSQGERDYVLNQFRTGRSPVLVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGR 478
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKSFYPKRGGRW 521 Y+FF EQD K+A +L+ VLEGANQ+VP E+RD A++ R RW Sbjct: 479 AGATGVAYTFFAEQDAKYASDLVKVLEGANQRVPPEIRDMASRGGGMGRSRRW 531
>tr|A7NVW1|A7NVW1_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019684001 PE=3 SV=1 Length = 837
Score = 232 bits (591), Expect = 2e-59 Identities = 118/174 (67%), Positives = 139/174 (79%), Gaps = 3/174 (1%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 AITQYVE+V P EKQ +LE+ILR+QE GSK+IIFCSTKK+CDQLARS+GR FGAA IHGD Sbjct: 388 AITQYVEVVSPPEKQRRLEQILRSQERGSKVIIFCSTKKLCDQLARSIGRNFGAAVIHGD 447
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQ ERD VL QF++G++PILVATDVAARGLDIKDIRVV+N+DFPTG+EDYVH Sbjct: 448 KSQVERDWVLNQFRSGKSPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 507
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKS---FYPKRGG 515 Y+FF+EQD K+A +LI VLEGANQ+VP E+RD A +S F RGG Sbjct: 508 AGATGVSYTFFSEQDCKYAADLIKVLEGANQRVPPEVRDMALRSGPGFGKDRGG 561
>tr|Q2QZE8|Q2QZE8_ORYSJ Retrotransposon protein, putative, unclassified, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os11g46240 PE=3 SV=1 Length = 1398
Score = 229 bits (585), Expect = 9e-59 Identities = 113/163 (69%), Positives = 134/163 (82%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYVE+V P +KQ +LE+ILR QE GSK+IIFCSTKKMCDQLAR +GR FGAA+IHGD Sbjct: 822 SITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGD 881
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD+VL QF+ GRAPILVATDVAARGLDIKDIRVV+N+DFPTG+EDYVH Sbjct: 882 KSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 941
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAK 491 Y+FF+EQD K+A +L+ VLEGANQ VP EL++ AA+ Sbjct: 942 AGATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 984
>tr|Q0IR12|Q0IR12_ORYSJ Os11g0689400 protein OS=Oryza sativa subsp. japonica GN=Os11g0689400 PE=3 SV=1 Length = 2841
Score = 229 bits (585), Expect = 9e-59 Identities = 113/163 (69%), Positives = 134/163 (82%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYVE+V P +KQ +LE+ILR QE GSK+IIFCSTKKMCDQLAR +GR FGAA+IHGD Sbjct: 701 SITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGD 760
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD+VL QF+ GRAPILVATDVAARGLDIKDIRVV+N+DFPTG+EDYVH Sbjct: 761 KSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 820
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAK 491 Y+FF+EQD K+A +L+ VLEGANQ VP EL++ AA+ Sbjct: 821 AGATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 863
>tr|B8AE58|B8AE58_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_06346 PE=4 SV=1 Length = 1382
Score = 229 bits (585), Expect = 9e-59 Identities = 113/163 (69%), Positives = 134/163 (82%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYVE+V P +KQ +LE+ILR QE GSK+IIFCSTKKMCDQLAR +GR FGAA+IHGD Sbjct: 821 SITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGD 880
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD+VL QF+ GRAPILVATDVAARGLDIKDIRVV+N+DFPTG+EDYVH Sbjct: 881 KSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 940
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAK 491 Y+FF+EQD K+A +L+ VLEGANQ VP EL++ AA+ Sbjct: 941 AGATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 983
>tr|A3BQQ8|A3BQQ8_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_025380 PE=3 SV=1 Length = 2902
Score = 229 bits (585), Expect = 9e-59 Identities = 113/163 (69%), Positives = 134/163 (82%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYVE+V P +KQ +LE+ILR QE GSK+IIFCSTKKMCDQLAR +GR FGAA+IHGD Sbjct: 822 SITQYVEVVPPLDKQRRLEQILRAQERGSKVIIFCSTKKMCDQLARDIGRSFGAASIHGD 881
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD+VL QF+ GRAPILVATDVAARGLDIKDIRVV+N+DFPTG+EDYVH Sbjct: 882 KSQAERDNVLNQFRTGRAPILVATDVAARGLDIKDIRVVINYDFPTGIEDYVHRIGRTGR 941
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAK 491 Y+FF+EQD K+A +L+ VLEGANQ VP EL++ AA+ Sbjct: 942 AGATGVSYTFFSEQDWKYAGDLVKVLEGANQHVPPELQEMAAR 984
>tr|B8ADH5|B8ADH5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00586 PE=4 SV=1 Length = 754
Score = 228 bits (582), Expect = 2e-58 Identities = 110/173 (63%), Positives = 136/173 (78%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYV+++ P EK +L++ILR+QEPGSKIIIFCSTK+MCDQLAR+L R +GA+AIHGD Sbjct: 445 SITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGD 504
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD VL++F++GR PILVATDVAARGLDIKDIRVVVN+DFPTGVEDYVH Sbjct: 505 KSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 564
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKSFYPKRGGRW 521 Y+FF +QD K+A +L+ +LEGANQ V +LRD ++ Y R RW Sbjct: 565 AGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRW 617
>tr|B7EQA6|B7EQA6_ORYSJ cDNA clone:J023079L21, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 759
Score = 228 bits (582), Expect = 2e-58 Identities = 110/173 (63%), Positives = 136/173 (78%) Frame = +3
Query: 3 AITQYVEIVMPYEKQGKLERILRTQEPGSKIIIFCSTKKMCDQLARSLGRGFGAAAIHGD 182 +ITQYV+++ P EK +L++ILR+QEPGSKIIIFCSTK+MCDQLAR+L R +GA+AIHGD Sbjct: 449 SITQYVDVITPPEKSRRLDQILRSQEPGSKIIIFCSTKRMCDQLARNLARQYGASAIHGD 508
Query: 183 KSQAERDHVLAQFKAGRAPILVATDVAARGLDIKDIRVVVNFDFPTGVEDYVHXXXXXXX 362 KSQAERD VL++F++GR PILVATDVAARGLDIKDIRVVVN+DFPTGVEDYVH Sbjct: 509 KSQAERDSVLSEFRSGRCPILVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGR 568
Query: 363 XXXXXXXYSFFTEQDGKHAKELIGVLEGANQKVPMELRDFAAKSFYPKRGGRW 521 Y+FF +QD K+A +L+ +LEGANQ V +LRD ++ Y R RW Sbjct: 569 AGATGVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRW 621
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