NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962525
Clone id TST39A01NGRL0014_B19
Library
Length 677
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_B19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AATTGAAGTCACAAAAGGTTGAAAAAAAAGTGACGCCAAATCATTGCTTCTCTGCTGCAA
GCGCACAGCATTGTGAGAGGGGCGAACGAGGAGAGAACTTTTGCGTTCTCGTTTGATCAG
ATCATCTTTCACATCAATCAACTTTCCAAACTGCGAGATTGCGTCTTCTCCTCAAACAAA
ATAGCGGTAAGCAGAGATGGGCTAGAGCTTTCTGGGCCGCACTTGGCTGTGGCCAAGTCT
GGAGCTTCAGCAAGCACTCAGCATTGCTTACTTCAAATTTTGAGCCTATTTTCGGCCAAT
CCAGCAGAATAAGTCACTCTGCGGGGTAAATCTTGCTCGCTCAATTCCTCTGTCTCATTC
ACATCTCTGCTAAATTAAGCAGAGGGAGCCCCTTAAGATGAATCCTCTCTGGTTAGGCTC
CTAAGTTTGCGCAGGGCACGCGTATCAGGCTTGCAACTCACCATTTTTACTCTTTGGGGT
CCTCTTGGAAGACAACCTATAAGCATGCATGTAAGGATTCGAAAGCCATGGATATCACTA
GTAACGCTGGAGCAGAGAAGGAAGAATGTGTCAGCACCAAGACTTGGTCAGACCAAGAGA
AGGGTTTTCGAGCCTATGCTCAACAACAGCTACATCAAAGAGCCTCCGGCAAAGCAAGAC
ATCCTCCCCGGTTGATT
■■Homology search results ■■ -
sp_hit_id A5V9W3
Definition sp|A5V9W3|G6PI_SPHWW Glucose-6-phosphate isomerase OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273)
Align length 75
Score (bit) 35.8
E-value 0.21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962525|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_B19, 5'
         (677 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A5V9W3|G6PI_SPHWW Glucose-6-phosphate isomerase OS=Sphingomon...    36   0.21 
sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus nor...    31   5.3  
sp|Q5AX75|EIF3C_EMENI Eukaryotic translation initiation factor 3...    26   5.3  
sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas aroma...    31   6.9  
sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi...    30   9.0  

>sp|A5V9W3|G6PI_SPHWW Glucose-6-phosphate isomerase OS=Sphingomonas
           wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=pgi
           PE=3 SV=1
          Length = 500

 Score = 35.8 bits (81), Expect = 0.21
 Identities = 22/75 (29%), Positives = 32/75 (42%)
 Frame = +1

Query: 58  QAHSIVRGANEERTFAFSFDQIIFHINQLSKLRDCVFSSNKIAVSRDGLELSGPHLAVAK 237
           Q +S++RGA     FA+     +      S L+     SN   V  DG  + GP  A+  
Sbjct: 299 QYYSVLRGAETRAVFAYDERLRLLP----SYLQQLEMESNGKGVKADGSPVDGPTAAITW 354

Query: 238 SGASASTQHCLLQIL 282
            G     QH + Q+L
Sbjct: 355 GGVGTDAQHAVFQLL 369


>sp|Q99P77|NOG1_RAT Nucleolar GTP-binding protein 1 OS=Rattus
           norvegicus GN=Gtpbp4 PE=2 SV=3
          Length = 637

 Score = 31.2 bits (69), Expect = 5.3
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 12/60 (20%)
 Frame = +1

Query: 484 LGRQPISMHVRIRKPW------------ISLVTLEQRRKNVSAPRLGQTKRRVFEPMLNN 627
           LG  P+S+ V+ RK W              L  L+ + KN   PR+ +T ++V    L N
Sbjct: 464 LGSMPVSLRVKTRKWWKIRQLAKQIREKKKLKILQSKEKNTQGPRMPRTAKKVQRADLEN 523


>sp|Q5AX75|EIF3C_EMENI Eukaryotic translation initiation factor 3
           subunit C OS=Emericella nidulans GN=nip1 PE=3 SV=1
          Length = 860

 Score = 26.2 bits (56), Expect(2) = 5.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 301 DWPKIGSKFEVSNAECLLKLQTWPQPSAAQKALA 200
           DW  I S+F+  N + +  LQ+ P P    K +A
Sbjct: 105 DWAVISSEFDKMNRQVVKVLQSGPVPKIYVKTVA 138



 Score = 21.9 bits (45), Expect(2) = 5.3
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = -1

Query: 407 EDSS*G-APSA*FSRDVNETEELSEQDLPRRV 315
           ED   G A ++ F +DV+++EE  E+D+ + V
Sbjct: 48  EDEDAGKAGASRFMKDVSDSEESEEEDVVKVV 79


>sp|Q479U3|OSTA_DECAR LPS-assembly protein OS=Dechloromonas
           aromatica (strain RCB) GN=imp PE=3 SV=1
          Length = 849

 Score = 30.8 bits (68), Expect = 6.9
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
 Frame = +1

Query: 151 LRDCVFSSNKIAVSRDGLELSGPH----LAVAKSGASASTQHCLLQILSLFSANPAE*VT 318
           L D V ++  + + +DG E+SGPH    LA     A   T H + ++ S F A P + V 
Sbjct: 140 LEDEVEATGSVRMLQDGAEISGPHMRMKLADQIGSAEQVTYHIVKEVPSRFYA-PQQTVV 198

Query: 319 LRGKSCSLNSSVSFTSLLN*AEGAP 393
               S + NS       ++ + G P
Sbjct: 199 TVASSNATNSGAPMMLNVSNSYGLP 223


>sp|Q7VN28|SURE_HAEDU 5'-nucleotidase surE OS=Haemophilus ducreyi
           GN=surE PE=3 SV=1
          Length = 253

 Score = 30.4 bits (67), Expect = 9.0
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 100 FAFSFDQIIFHINQLSKLRDCVFSSNKIAVSRDGLELSGPHLAVAKSG 243
           F  SFD ++  IN  + L D V  S  +A + +G  L  P LAV+  G
Sbjct: 81  FETSFDLVVSGINHGANLGDDVVYSGTVAAALEGRHLRLPSLAVSLVG 128
tr_hit_id B1VTF8
Definition tr|B1VTF8|B1VTF8_STRGG Putative M23-family peptidase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350)
Align length 141
Score (bit) 34.7
E-value 5.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962525|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_B19, 5'
         (677 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1VTF8|B1VTF8_STRGG Putative M23-family peptidase OS=Streptom...    35   5.7  
tr|Q5PQ37|Q5PQ37_XENLA LOC495992 protein OS=Xenopus laevis GN=rw...    27   9.7  

>tr|B1VTF8|B1VTF8_STRGG Putative M23-family peptidase
           OS=Streptomyces griseus subsp. griseus (strain JCM 4626
           / NBRC 13350) GN=SGR_4219 PE=4 SV=1
          Length = 276

 Score = 34.7 bits (78), Expect = 5.7
 Identities = 33/141 (23%), Positives = 52/141 (36%), Gaps = 2/141 (1%)
 Frame = +3

Query: 210 FWAALGCGQVWSFSKHSALLTSNFEPIFGQSSRISHSAG*ILLAQFLCLIHISAKLSRGS 389
           F A  GCGQ W++S HSA                        + Q L  +      + GS
Sbjct: 34  FKAPYGCGQQWTYSHHSA-----------------------EVRQALDFVRTDGGATAGS 70

Query: 390 PLR*ILSG*APKFAQ--GTRIRLATHHFYSLGSSWKTTYKHACKDSKAMDITSNAGAEKE 563
           P+    +G A +++Q  G    +A  H    G  WKT Y H      A  + + A   + 
Sbjct: 71  PVLASAAGTAYRYSQPSGAGNYIAVEH----GGGWKTYYFHLA----AFSVANGAQVAQG 122

Query: 564 ECVSTKTWSDQEKGFRAYAQQ 626
           + + T   +    G   + +Q
Sbjct: 123 QQIGTTGSTGNSSGAHIHYEQ 143


>tr|Q5PQ37|Q5PQ37_XENLA LOC495992 protein OS=Xenopus laevis
           GN=rwdd2b PE=2 SV=1
          Length = 296

 Score = 27.3 bits (59), Expect(2) = 9.7
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 417 APKFAQGTRIRLATHHFYSLGSSWKTTYKHACKDSKAMDIT 539
           +P+ A+ TR+ + +HH Y+     K   KH  + SK MD++
Sbjct: 154 SPENAEFTRLWIYSHHIYN-----KVKRKHILEWSKEMDLS 189



 Score = 24.3 bits (51), Expect(2) = 9.7
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +2

Query: 548 WSREGRMCQHQDLVRPREGFSSLCSTTATSKSLRQSKTSSPVD 676
           W+R  ++   + L+R RE     CS +   K +++ K   P++
Sbjct: 213 WNRLRKLTWKRILIRHREDIPLSCSISDIRKEIQKLKKFPPLE 255