| DK962530 |
| Clone id |
TST39A01NGRL0014_B24 |
| Library |
TST39 |
| Length |
492 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_B24. 5' end sequence. |
| Accession |
DK962530 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL65Contig2 |
| Sequence |
GCCACAGACATTTGCGTAGTTATCTCCATTCCTACAATTTTCTGTTTGCTTCTGCAAACT
ATATAGCCATGTCTTCGTGCGGGAGCGGATGCAGCTGCGGTGCTAACTGCAGCTGTGGCA
GTGGATGCAAGTGTGGTAAGAAGGTGTTTGACGAAACTGCCCTCGATGCCCCGAGGGAAG
TGACGGTTGCTGGCTGTGCGTGCAAGTGTGGATCTAACTGCCAGTGCGCCTACCCCTGTC
CCTGTGCGCAAACCTCGAGCGGGGATGCTTGCAAGTGCGGTGCGAACTGTACCTGCAATC
CCTGCAACTGCTGATTATGATCATGATTAGTACTAACTTGCGCCATGTAGAAATTACCCT
GTTGAAAGATGCGATGCACGCATAGGCAAGCATGATGGTATGGCTGTCTGCTCGCCACTT
GCTCCATCTTCATGTATCTTAGAAAGATAAATTTCACTTTTTGCTGGTAAAAAAAAAAAA
AAAAAAAAAAAA |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P55946 |
| Definition |
sp|P55946|MT_ARIAR Metallothionein OS=Arianta arbustorum |
| Align length |
29 |
| Score (bit) |
33.1 |
| E-value |
0.62 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962530|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_B24, 5'
(468 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P55946|MT_ARIAR Metallothionein OS=Arianta arbustorum PE=1 SV=1 33 0.62
sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Sola... 33 0.62
sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE... 33 0.80
sp|Q43512|MT2X_SOLLC Metallothionein-like protein type 2 OS=Sola... 33 0.80
sp|Q40157|MT2A_SOLLC Metallothionein-like protein type 2 A OS=So... 33 0.80
sp|Q43513|MT2Y_SOLLC Metallothionein-like protein type 2 OS=Sola... 32 1.1
sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium ... 32 1.1
sp|Q41670|MT1B_VICFA Metallothionein-like protein 1B OS=Vicia fa... 32 1.1
sp|Q40158|MT2B_SOLLC Metallothionein-like protein type 2 B OS=So... 32 1.8
sp|P20830|MT1_PEA Metallothionein-like protein 1 OS=Pisum sativu... 32 1.8
sp|P20238|MT1_MIMGU Metallothionein-like protein 1 OS=Mimulus gu... 32 1.8
sp|Q41669|MT1A_VICFA Metallothionein-like protein 1A OS=Vicia fa... 32 1.8
sp|P51902|MT_GADMO Metallothionein OS=Gadus morhua GN=mt PE=3 SV=1 31 3.1
sp|Q94550|MT_DREPO Metallothionein OS=Dreissena polymorpha PE=1 ... 31 3.1
sp|Q40410|MT2_NICPL Metallothionein-like protein type 2 OS=Nicot... 31 3.1
sp|P69164|MT2_BRARA Metallothionein-like protein type 2 OS=Brass... 31 3.1
sp|P69163|MT22_BRAJU Metallothionein-like protein type 2, MT2-18... 31 3.1
sp|Q54J58|Y7870_DICDI Uncharacterized protein DDB_G0288281 OS=Di... 30 4.0
sp|P43402|MT54_BRANA Metallothionein-like protein LSC54 OS=Brass... 30 4.0
sp|Q96353|MT2_BRANA Metallothionein-like protein type 2 LSC210 (... 30 4.0
sp|Q38805|MT2B_ARATH Metallothionein-like protein 2B OS=Arabidop... 30 4.0
sp|P25860|MT2A_ARATH Metallothionein-like protein 2A OS=Arabidop... 30 4.0
sp|P56172|MT25_BRAJU Metallothionein-like protein type 2, MT2-28... 30 4.0
sp|P56170|MT23_BRAJU Metallothionein-like protein type 2, MT2-22... 30 4.0
sp|P56168|MT21_BRAJU Metallothionein-like protein type 2, MT2-4/... 30 4.0
sp|O24528|MT1_FESRU Metallothionein-like protein 1 OS=Festuca ru... 30 4.0
sp|Q38804|MT1C_ARATH Metallothionein-like protein 1C OS=Arabidop... 30 4.0
sp|P55947|MTCU_HELPO Copper-metallothionein OS=Helix pomatia PE=... 30 5.2
sp|O22319|MT2_MUSAC Metallothionein-like protein type 2 OS=Musa ... 30 5.2
sp|Q39459|MT2_CICAR Metallothionein-like protein 2 OS=Cicer arie... 30 5.2
>sp|P55946|MT_ARIAR Metallothionein OS=Arianta arbustorum PE=1 SV=1
Length = 66
Score = 33.1 bits (74), Expect = 0.62
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPCAQ----TSSGDACK 275
C+CGS CQC C CA + D CK
Sbjct: 18 CQCGSKCQCGEGCACASCKTCNCTSDGCK 46
Score = 29.6 bits (65), Expect = 6.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 192 GCACKCGSNCQCAYPCPCAQTSSGDAC 272
G C+CG C CA C TS G C
Sbjct: 21 GSKCQCGEGCACASCKTCNCTSDGCKC 47
>sp|Q43515|MT2Z_SOLLC Metallothionein-like protein type 2 OS=Solanum
lycopersicum PE=3 SV=1
Length = 84
Score = 33.1 bits (74), Expect = 0.62
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPCAQTSS 260
+ T G CKCGS+C+C PC C S+
Sbjct: 55 KATEGGNGCKCGSSCKCD-PCNCCSAST 81
>sp|P33187|MTCD_HELPO Cadmium-metallothionein OS=Helix pomatia PE=1
SV=1
Length = 66
Score = 32.7 bits (73), Expect = 0.80
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPCAQ----TSSGDACK 275
C+CGS CQC C CA + D CK
Sbjct: 18 CQCGSKCQCGEGCTCAACKTCNCTSDGCK 46
Score = 29.6 bits (65), Expect = 6.8
Identities = 12/27 (44%), Positives = 13/27 (48%)
Frame = +3
Query: 192 GCACKCGSNCQCAYPCPCAQTSSGDAC 272
G C+CG C CA C TS G C
Sbjct: 21 GSKCQCGEGCTCAACKTCNCTSDGCKC 47
>sp|Q43512|MT2X_SOLLC Metallothionein-like protein type 2 OS=Solanum
lycopersicum PE=3 SV=1
Length = 72
Score = 32.7 bits (73), Expect = 0.80
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPC 245
E AG CKCGSNC C PC C
Sbjct: 51 EEKAAGEGCKCGSNCTCD-PCNC 72
>sp|Q40157|MT2A_SOLLC Metallothionein-like protein type 2 A
OS=Solanum lycopersicum GN=MTA PE=2 SV=1
Length = 72
Score = 32.7 bits (73), Expect = 0.80
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPC 245
E AG CKCGSNC C PC C
Sbjct: 51 EEKAAGEGCKCGSNCTCD-PCNC 72
>sp|Q43513|MT2Y_SOLLC Metallothionein-like protein type 2 OS=Solanum
lycopersicum PE=3 SV=1
Length = 73
Score = 32.3 bits (72), Expect = 1.1
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPC 245
+ T G CKCGSNC C PC C
Sbjct: 52 KATEGGNGCKCGSNCTCD-PCNC 73
>sp|P43399|MT1_TRIRP Metallothionein-like protein 1 OS=Trifolium
repens GN=MT1B PE=3 SV=1
Length = 75
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPCAQTSSG 263
C CGS+C C C C + SSG
Sbjct: 4 CNCGSSCNCGDSCKCNKRSSG 24
Score = 30.4 bits (67), Expect = 4.0
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 165 DAPREVTVAGCACKCGSNCQCAYPCPC 245
DA V CKCGS+C C PC C
Sbjct: 49 DAEMGVAAEDSGCKCGSSCTCD-PCNC 74
>sp|Q41670|MT1B_VICFA Metallothionein-like protein 1B OS=Vicia faba
GN=MT1B PE=3 SV=1
Length = 75
Score = 32.3 bits (72), Expect = 1.1
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPCAQTSSG 263
C CGS+C C C C + SSG
Sbjct: 4 CNCGSSCNCGDSCKCNKRSSG 24
>sp|Q40158|MT2B_SOLLC Metallothionein-like protein type 2 B
OS=Solanum lycopersicum GN=MTB PE=2 SV=1
Length = 82
Score = 31.6 bits (70), Expect = 1.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPCAQ 251
E VA CKCGS+C+C PC C++
Sbjct: 59 ESPVAENGCKCGSDCKC-NPCTCSK 82
>sp|P20830|MT1_PEA Metallothionein-like protein 1 OS=Pisum sativum
GN=MTA PE=3 SV=1
Length = 75
Score = 31.6 bits (70), Expect = 1.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPCAQTSSG 263
C CGS+C C C C + SSG
Sbjct: 4 CGCGSSCNCGDSCKCNKRSSG 24
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A8QMV1 |
| Definition |
tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians |
| Align length |
42 |
| Score (bit) |
41.2 |
| E-value |
0.026 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962530|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_B24, 5'
(468 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians ... 41 0.026
tr|B3VKV7|B3VKV7_SOLNI Type 2 metallothionein OS=Solanum nigrum ... 37 0.65
tr|Q75NI4|Q75NI4_PHAAU Type 1 metallothionein OS=Phaseolus aureu... 30 0.70
tr|Q75NI0|Q75NI0_PHAAN Type 1 metallothionein OS=Phaseolus angul... 30 0.70
tr|B3VKV6|B3VKV6_SOLNI Type 2 metallothionein OS=Solanum nigrum ... 36 0.85
tr|B3VKV5|B3VKV5_SOLNI Type 2 metallothionein OS=Solanum nigrum ... 35 1.4
tr|Q564N1|Q564N1_IPOBA Metallothionein-like type 2 protein OS=Ip... 35 2.5
tr|Q4ZGB3|Q4ZGB3_IPOBA Metallothionein-like type 2 protein OS=Ip... 35 2.5
tr|Q8VPM2|Q8VPM2_9MICC Putative proline-rich protein OS=Micrococ... 34 3.2
tr|Q8S3M2|Q8S3M2_AZOFI Metallothionein-like protein 2 OS=Azolla ... 34 3.2
tr|B5U0R0|B5U0R0_ANABR Metallothionein OS=Anadara broughtonii PE... 34 3.2
tr|A7QE40|A7QE40_VITVI Chromosome chr4 scaffold_83, whole genome... 34 4.2
tr|Q9ZSC6|Q9ZSC6_IPOBA Metallothionein-like type 1 protein OS=Ip... 34 4.2
tr|Q4ZGB4|Q4ZGB4_IPOBA Metallothionein-like type 1 protein OS=Ip... 34 4.2
tr|B8LFH0|B8LFH0_IPOBA Metallothionein-like protein OS=Ipomoea b... 34 4.2
tr|Q5PAM7|Q5PAM7_ANAMM Putative uncharacterized protein OS=Anapl... 33 5.5
tr|Q5PAM5|Q5PAM5_ANAMM Putative uncharacterized protein OS=Anapl... 33 5.5
tr|Q5PAG9|Q5PAG9_ANAMM Putative uncharacterized protein OS=Anapl... 33 5.5
tr|Q2VT53|Q2VT53_CAPAN Metallothionein-like protein type 2 OS=Ca... 33 5.5
tr|Q29B77|Q29B77_DROPS GA11823 OS=Drosophila pseudoobscura pseud... 33 7.1
tr|A2DFG0|A2DFG0_TRIVA Putative uncharacterized protein OS=Trich... 33 7.1
tr|Q8RUJ7|Q8RUJ7_HELTU Type 2 metallothionein-like protein OS=He... 33 7.2
tr|Q5PXZ0|Q5PXZ0_ALLSA Metallothionein MT2a OS=Allium sativum GN... 33 7.2
tr|O22492|O22492_OENJA Metallothionein-1 like protein OS=Oenanth... 33 7.2
tr|A2G7H1|A2G7H1_TRIVA CAMK family protein kinase OS=Trichomonas... 33 7.2
tr|Q20Y28|Q20Y28_RHOPB Putative uncharacterized protein OS=Rhodo... 33 9.3
tr|A7CTB3|A7CTB3_9BACT Putative uncharacterized protein OS=Opitu... 33 9.3
tr|Q73YC6|Q73YC6_MYCPA Putative uncharacterized protein OS=Mycob... 33 9.4
tr|A0QEN1|A0QEN1_MYCA1 Cytochrome P450 superfamily protein OS=My... 33 9.4
tr|Q9L6U2|Q9L6U2_MYCAV Putative CYTP450 OS=Mycobacterium avium G... 33 9.4
>tr|A8QMV1|A8QMV1_AEQIR Metallothionein OS=Aequipecten irradians
PE=2 SV=1
Length = 145
Score = 41.2 bits (95), Expect = 0.026
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +3
Query: 147 FDETALDAPREVTVAGCACKCGSNCQCAYPCPCAQTSSGDAC 272
F + P V G ACKCG +C+C+ CPC +G C
Sbjct: 40 FSAKSSTCPDGVCQMGVACKCGGSCKCSDSCPCPNCKAGCKC 81
>tr|B3VKV7|B3VKV7_SOLNI Type 2 metallothionein OS=Solanum nigrum
GN=MT2e PE=4 SV=1
Length = 77
Score = 36.6 bits (83), Expect = 0.65
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 171 PREVTVAGCACKCGSNCQCAYPCPC 245
P+ T G CKCGSNC+C PC C
Sbjct: 54 PKNATEGGNGCKCGSNCKCD-PCTC 77
>tr|Q75NI4|Q75NI4_PHAAU Type 1 metallothionein OS=Phaseolus aureus
GN=MET PE=4 SV=1
Length = 73
Score = 29.6 bits (65), Expect(2) = 0.70
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPC 245
CKCGSNC C PC C
Sbjct: 59 CKCGSNCTCD-PCNC 72
Score = 26.9 bits (58), Expect(2) = 0.70
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 192 GCACKCGSNCQC 227
G +C CGSNC C
Sbjct: 7 GSSCNCGSNCSC 18
>tr|Q75NI0|Q75NI0_PHAAN Type 1 metallothionein OS=Phaseolus
angularis GN=MET PE=4 SV=1
Length = 73
Score = 29.6 bits (65), Expect(2) = 0.70
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +3
Query: 201 CKCGSNCQCAYPCPC 245
CKCGSNC C PC C
Sbjct: 59 CKCGSNCPCD-PCNC 72
Score = 26.9 bits (58), Expect(2) = 0.70
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +3
Query: 192 GCACKCGSNCQC 227
G +C CGSNC C
Sbjct: 7 GSSCNCGSNCSC 18
>tr|B3VKV6|B3VKV6_SOLNI Type 2 metallothionein OS=Solanum nigrum
GN=MT2d PE=4 SV=1
Length = 77
Score = 36.2 bits (82), Expect = 0.85
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 171 PREVTVAGCACKCGSNCQCAYPCPC 245
P+ T G CKCGSNC+C PC C
Sbjct: 54 PKNATEGGNGCKCGSNCKCD-PCNC 77
>tr|B3VKV5|B3VKV5_SOLNI Type 2 metallothionein OS=Solanum nigrum
GN=MT2c PE=4 SV=1
Length = 77
Score = 35.4 bits (80), Expect = 1.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +3
Query: 171 PREVTVAGCACKCGSNCQCAYPCPC 245
P+ T G CKCGSNC C PC C
Sbjct: 54 PKNATEGGNGCKCGSNCTCD-PCNC 77
>tr|Q564N1|Q564N1_IPOBA Metallothionein-like type 2 protein
OS=Ipomoea batatas GN=mt2k PE=4 SV=1
Length = 76
Score = 34.7 bits (78), Expect = 2.5
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPC 245
+ T G ACKCG NCQC PC C
Sbjct: 55 KATEGGHACKCGDNCQC-NPCNC 76
>tr|Q4ZGB3|Q4ZGB3_IPOBA Metallothionein-like type 2 protein
OS=Ipomoea batatas GN=mt2k PE=4 SV=1
Length = 76
Score = 34.7 bits (78), Expect = 2.5
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = +3
Query: 177 EVTVAGCACKCGSNCQCAYPCPC 245
+ T G ACKCG NCQC PC C
Sbjct: 55 KATEGGHACKCGDNCQC-NPCNC 76
>tr|Q8VPM2|Q8VPM2_9MICC Putative proline-rich protein OS=Micrococcus
sp. 28 PE=4 SV=1
Length = 331
Score = 34.3 bits (77), Expect = 3.2
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = +1
Query: 139 RRCLTKLPSMPRGK*RLLAVRASVDLTASAPTPVPVRKPRAGMLASAVRTVPAIPATAD- 315
+R T++P+M R + R LA ++ LTA P P P V T PA P +A+
Sbjct: 137 QRSPTEVPAMNRHRTRALACILALSLTACTPPPDQAPDP-----LPTVATTPAAPTSAEP 191
Query: 316 --YDHD 327
+DHD
Sbjct: 192 TGHDHD 197
>tr|Q8S3M2|Q8S3M2_AZOFI Metallothionein-like protein 2 OS=Azolla
filiculoides GN=AzMT2 PE=4 SV=1
Length = 77
Score = 34.3 bits (77), Expect = 3.2
Identities = 22/58 (37%), Positives = 23/58 (39%), Gaps = 25/58 (43%)
Frame = +3
Query: 147 FDETALDAPREVTV-------AGC------------------ACKCGSNCQCAYPCPC 245
FDETA DAP EV V + C C CGSNC C PC C
Sbjct: 21 FDETAFDAPMEVEVTVFGNEGSNCGFDSSCGFESDAQATSQNGCSCGSNCTC-NPCRC 77
|