DK962543
Clone id TST39A01NGRL0014_C13
Library
Length 571
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_C13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACC
AATATCTGCGCCCCCCCTGATCCCAGACAGCCAAGTGACAATGGCATCCAAATATGGGGG
CTCATCAGCAACCTCCCCGAGGTCGACTTCGTCGTCGTCGATGGCGGGGGGAGGCGGGAT
GGAGGGGCACAAGCCGCAGTGCGTGTGTGCCCCAACAACTCATGAAGGATCATTCCGATG
CCGTCTGCATCGGTCGTCGTCATCTAAGAAGTGGGACAAGATGACGTCTGCTAACACAAC
CCCAGCTACAACCTCCCCCACCATCGAGGCGCAGTAGCCCCAGCTCCTTATATAGTCCTT
TTGCCAAGGAGGTTACATACTCTTTATTCCTCTCAAAAGGATGCATAATCTTGATCAATA
TCTCTGGCTGTATTCTTTGGTTACTACGCAATTCCCCACAATTGTACATCCTTTGCCACC
TTTGCCCACCACATGTAGATGATGCGCATACTAATCTCTTGATGTAGATGAGGCTGTAGC
ATGTGAATCGAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O87393
Definition sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
Align length 13
Score (bit) 30.8
E-value 4.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962543|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_C13, 5'
(550 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium melilo... 31 4.6
sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspor... 30 7.8

>sp|O87393|GLNA3_RHIME Glutamine synthetase 3 OS=Rhizobium meliloti
GN=glnT PE=3 SV=1
Length = 435

Score = 30.8 bits (68), Expect = 4.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -1

Query: 109 GCHCHLAVWDQGG 71
GCHCH++VWD G
Sbjct: 234 GCHCHISVWDLAG 246


>sp|A4FBL9|UVRC_SACEN UvrABC system protein C OS=Saccharopolyspora
erythraea (strain NRRL 23338) GN=uvrC PE=3 SV=1
Length = 717

Score = 30.0 bits (66), Expect = 7.8
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = -2

Query: 132 VADEPPYLDAIVTWLSGIRGG 70
V + PP +AI WLSG+RGG
Sbjct: 332 VPELPPECEAITEWLSGLRGG 352


tr_hit_id B6SH36
Definition tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 25
Score (bit) 51.2
E-value 4.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962543|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_C13, 5'
(550 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea m... 51 4e-05
tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea m... 51 5e-05
tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa s... 49 2e-04
tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa sub... 49 2e-04
tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa GN=H05... 49 2e-04
tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea m... 49 2e-04
tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_15... 48 3e-04
tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella paten... 47 5e-04
tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea... 47 7e-04
tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa ... 47 9e-04
tr|Q7F8Y8|Q7F8Y8_ORYSJ OSJNBb0116K07.4 protein OS=Oryza sativa s... 47 9e-04
tr|A3AVC8|A3AVC8_ORYSJ Putative uncharacterized protein OS=Oryza... 47 9e-04
tr|A2XVA5|A2XVA5_ORYSI Putative uncharacterized protein OS=Oryza... 47 9e-04
tr|A9NW60|A9NW60_PICSI Putative uncharacterized protein OS=Picea... 46 0.001
tr|A9NRP8|A9NRP8_PICSI Putative uncharacterized protein OS=Picea... 46 0.001
tr|A7QXY0|A7QXY0_VITVI Chromosome undetermined scaffold_235, who... 46 0.001
tr|A9U197|A9U197_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|Q9ZTM9|Q9ZTM9_PETHY PGPS/D10 OS=Petunia hybrida GN=PGPS/D10 P... 45 0.003
tr|Q9C9V7|Q9C9V7_ARATH Putative uncharacterized protein T23K23.2... 45 0.003
tr|A5AWM3|A5AWM3_VITVI Putative uncharacterized protein OS=Vitis... 45 0.003
tr|Q6H886|Q6H886_ORYSJ Putative uncharacterized protein OJ1572_F... 45 0.003
tr|A2YEW1|A2YEW1_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|A2X1P3|A2X1P3_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.003
tr|Q69V63|Q69V63_ORYSJ Os06g0608000 protein OS=Oryza sativa subs... 44 0.004
tr|Q5ZF84|Q5ZF84_PLAMJ Putative uncharacterized protein OS=Plant... 44 0.004
tr|A9PHV6|A9PHV6_POPTR Putative uncharacterized protein OS=Popul... 44 0.004
tr|A9NKK5|A9NKK5_PICSI Putative uncharacterized protein OS=Picea... 44 0.004
tr|A3BDF7|A3BDF7_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.004
tr|Q0E0T0|Q0E0T0_ORYSJ Os02g0525600 protein OS=Oryza sativa subs... 44 0.007
tr|B8AIR0|B8AIR0_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.007

>tr|B6SH36|B6SH36_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 113

Score = 51.2 bits (121), Expect = 4e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2

Query: 188 HKPQCVCAPTTHEGSFRCRLHRSSS 262
H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 50 HAPKCVCAPATHAGSFKCRLHRSSS 74


>tr|B6TQA4|B6TQA4_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 108

Score = 50.8 bits (120), Expect = 5e-05
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = +2

Query: 188 HKPQCVCAPTTHEGSFRCRLHRSSS 262
H P+CVCAP TH GSF+CRLHRSSS
Sbjct: 45 HGPKCVCAPATHAGSFKCRLHRSSS 69


>tr|Q7XSC7|Q7XSC7_ORYSJ OSJNBb0118P14.9 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0118P14.9 PE=4 SV=2
Length = 108

Score = 48.5 bits (114), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 194 PQCVCAPTTHEGSFRCRLHRSSS 262
P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57 PKCVCAPATHAGSFKCRLHRSSS 79


>tr|Q7F8W7|Q7F8W7_ORYSJ OJ000315_02.4 protein OS=Oryza sativa subsp.
japonica GN=OJ000315_02.4 PE=4 SV=1
Length = 175

Score = 48.5 bits (114), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 194 PQCVCAPTTHEGSFRCRLHRSSS 262
P+CVCAP TH GSF+CRLHRSSS
Sbjct: 124 PKCVCAPATHAGSFKCRLHRSSS 146


>tr|Q01L50|Q01L50_ORYSA H0502B11.1 protein OS=Oryza sativa
GN=H0502B11.1 PE=4 SV=1
Length = 108

Score = 48.5 bits (114), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 194 PQCVCAPTTHEGSFRCRLHRSSS 262
P+CVCAP TH GSF+CRLHRSSS
Sbjct: 57 PKCVCAPATHAGSFKCRLHRSSS 79


>tr|B6U7D5|B6U7D5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=4 SV=1
Length = 105

Score = 48.5 bits (114), Expect = 2e-04
Identities = 19/23 (82%), Positives = 21/23 (91%)
Frame = +2

Query: 194 PQCVCAPTTHEGSFRCRLHRSSS 262
P+CVCAP TH GSF+CRLHRSSS
Sbjct: 58 PKCVCAPATHAGSFKCRLHRSSS 80


>tr|Q9LXZ0|Q9LXZ0_ARATH Putative uncharacterized protein T5P19_150
OS=Arabidopsis thaliana GN=T5P19_150 PE=4 SV=1
Length = 110

Score = 48.1 bits (113), Expect = 3e-04
Identities = 19/25 (76%), Positives = 22/25 (88%)
Frame = +2

Query: 191 KPQCVCAPTTHEGSFRCRLHRSSSS 265
K C+CAPT HEGSFRCRLHRSS++
Sbjct: 62 KTVCICAPTKHEGSFRCRLHRSSAT 86


>tr|A9TIC0|A9TIC0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_93133 PE=4 SV=1
Length = 429

Score = 47.4 bits (111), Expect = 5e-04
Identities = 19/21 (90%), Positives = 20/21 (95%)
Frame = +2

Query: 200 CVCAPTTHEGSFRCRLHRSSS 262
C+CAPTTH GSFRCRLHRSSS
Sbjct: 126 CLCAPTTHAGSFRCRLHRSSS 146


>tr|A9NY76|A9NY76_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=4 SV=1
Length = 99

Score = 47.0 bits (110), Expect = 7e-04
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = +2

Query: 200 CVCAPTTHEGSFRCRLHRSSSSKKWDK 280
C+C+PTTHEGSFRCRLHRS S W K
Sbjct: 48 CLCSPTTHEGSFRCRLHRSPSG-YWGK 73


>tr|Q7X6Y3|Q7X6Y3_ORYSA OSJNBa0014K14.12 protein OS=Oryza sativa
GN=OSJNBa0014K14.12 PE=4 SV=3
Length = 121

Score = 46.6 bits (109), Expect = 9e-04
Identities = 17/19 (89%), Positives = 19/19 (100%)
Frame = +2

Query: 197 QCVCAPTTHEGSFRCRLHR 253
QC+C+PTTHEGSFRCRLHR
Sbjct: 25 QCICSPTTHEGSFRCRLHR 43