NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962546
Clone id TST39A01NGRL0014_C16
Library
Length 625
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_C16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CACGCGTTACAAGTTTGCAGCTTGGGAAACACGCTCGCACCCGTTTTTGTCTCTTTGATA
CAAAACTACTTCATATTCTCTCATTTGCAGGTGTTTTTGTTCCCTGCTCAGACCAACGGT
TTATCAGATCAGGGCTGGTTCTACTTTCCTCTTGTGAAGGACATGGGTGCCGGTCAGAGC
CGTGATGGTGAGCTTCGCTCAGATTCTGAAGAAGAAGAGGAGGAGGAAGAAGACGAACAA
GAAATTAAGCAGAAGTCTGCTGTTTCACCCGCTTCTTCCTCGAAATCCAGCACGCGGCAA
AGTTTTGCTTCTGCAAGCTCCAAGGATGGGCTCCAAAGCATCGGCTCTAAATTCGATTCT
CTTACCTTGGCAGGCAAGCGAGTGGCCAAAGGCCCTCAAAAGGCCAAGCTTTACCGCCAT
CTTGGAGGTAATACACCTAAAGCACAATGGGTTGTTGCGGACAAAGCTGTTTCTTGGGAG
TTTACCAGAGATGGAGATGATCATGACGAAGATGAAGATGACGACGGGGATGGTGTGAGT
GGATCGTGGAAGACATGGTATCTTTTGGTTGGTAGCAGGGTGAGTGCTCGTGTTGGTGAG
AAGCTGCAAGCAAAATTCTTTGGAG
■■Homology search results ■■ -
sp_hit_id Q07E00
Definition sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2 OS=Ornithorhynchus anatinus
Align length 34
Score (bit) 31.6
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962546|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_C16, 5'
         (625 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2 OS...    32   3.4  
sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2 OS...    30   7.7  

>sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2
           OS=Ornithorhynchus anatinus GN=CAPZA2 PE=3 SV=3
          Length = 286

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 327 WAPKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 428
           W PK+R+  +F +L ++A+  RP + +    SWR
Sbjct: 88  WDPKNRVSFKFDHLRKEATDPRPQEPENAVESWR 121


>sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2
           OS=Macropus eugenii GN=CAPZA2 PE=3 SV=1
          Length = 286

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 333 PKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 428
           PK+R+  +F +L ++A+  RP +G+    SWR
Sbjct: 90  PKNRVSFKFDHLRKEATDPRPCEGENAIESWR 121
tr_hit_id Q9LJK5
Definition tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
Align length 76
Score (bit) 62.4
E-value 2.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962546|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_C16, 5'
         (625 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana GN=At...    62   2e-08
tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4...    59   3e-07
tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2...    59   3e-07
tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella paten...    59   3e-07
tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome...    58   5e-07
tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis...    58   5e-07
tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=de...    57   1e-06
tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subs...    52   4e-05
tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            52   4e-05
tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana ...    50   1e-04
tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragmen...    49   2e-04
tr|B6UDP8|B6UDP8_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            45   0.003
tr|B6UBL0|B6UBL0_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            45   0.003
tr|A9U2M9|A9U2M9_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.039
tr|Q6K4M9|Q6K4M9_ORYSJ Os02g0789600 protein OS=Oryza sativa subs...    37   0.74 
tr|A9SNF7|A9SNF7_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.74 
tr|A2XAF1|A2XAF1_ORYSI Putative uncharacterized protein OS=Oryza...    37   0.74 
tr|A6DXQ1|A6DXQ1_9RHOB Putative cytochrome P450 OS=Roseovarius s...    35   3.7  
tr|A3AC52|A3AC52_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.2  

>tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
           GN=At3g19240 PE=4 SV=1
          Length = 648

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
 Frame = +1

Query: 406 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXV---SGSWKTWYLLVGS 576
           KLYRH+GGNTPKA+W+V+DK  S++F +                    G    W+L VG+
Sbjct: 90  KLYRHIGGNTPKAKWIVSDKMTSYKFVKTSSVDGEDIDDYDDCEESGEGGESFWFLGVGT 149

Query: 577 RVSARVGEKLQAKFFG 624
           +V ARV   +Q K FG
Sbjct: 150 KVKARVSTDMQLKMFG 165


>tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4
           SV=1
          Length = 639

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +1

Query: 406 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 585
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 586 ARVGEKLQAKFFG 624
            RV   +Q K FG
Sbjct: 141 VRVSTDMQLKMFG 153


>tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2
           SV=1
          Length = 639

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 26/73 (35%), Positives = 37/73 (50%)
 Frame = +1

Query: 406 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 585
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 586 ARVGEKLQAKFFG 624
            RV   +Q K FG
Sbjct: 141 VRVSTDMQLKMFG 153


>tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198241 PE=4 SV=1
          Length = 546

 Score = 58.5 bits (140), Expect = 3e-07
 Identities = 31/81 (38%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
 Frame = +1

Query: 400 KAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWK-------TW 558
           + KLY+H+GG TP A+WV  +K + +EF R                 G WK       +W
Sbjct: 3   RVKLYQHVGGTTPAAKWVPVEKQIGYEFVREDEEDD----------DGEWKLNTKNFRSW 52

Query: 559 YLLVGSRVSARVGEKLQAKFF 621
            LLVG +  A V + LQAKFF
Sbjct: 53  LLLVGGKFGAPVDDNLQAKFF 73


>tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014814001
           PE=4 SV=1
          Length = 632

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +1

Query: 394 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 570
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 571 GSRVSARVGEKLQAKFFG 624
           GS+V A+V  ++Q K FG
Sbjct: 128 GSKVRAKVALEMQLKTFG 145


>tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043502 PE=4 SV=1
          Length = 632

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
 Frame = +1

Query: 394 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 570
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 571 GSRVSARVGEKLQAKFFG 624
           GS+V A+V  ++Q K FG
Sbjct: 128 GSKVRAKVALEMQLKTFG 145


>tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=dem
           PE=2 SV=1
          Length = 644

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 34/101 (33%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
 Frame = +1

Query: 331 LQSIGSKFDSLTLA-GKRVAKGP---QKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXX 498
           L  + +K  +L L  G   AK P      KLY H+GGNT  ++WVV+DK  ++ F +   
Sbjct: 58  LDDVEAKLKALKLKYGTPHAKTPTAKNAVKLYLHVGGNTANSKWVVSDKVTAYSFVKSGS 117

Query: 499 XXXXXXXXXXXXVSGSWKTWYLLVGSRVSARVGEKLQAKFF 621
                          +W  W L +GS+V A++ E LQ K F
Sbjct: 118 EDGSDDDENEETEENAW--WVLKIGSKVRAKIDENLQLKAF 156


>tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subsp.
           japonica GN=P0544B02.5 PE=2 SV=1
          Length = 649

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 40/72 (55%)
 Frame = +1

Query: 406 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 585
           KLY H+GG++P A+W+++D+  +  F R                + S   W L+VGS++ 
Sbjct: 96  KLYLHIGGSSPSARWIISDRLAAASFVRAGDDDDDD--------APSSGPWCLVVGSKIR 147

Query: 586 ARVGEKLQAKFF 621
           ARVG +LQ K F
Sbjct: 148 ARVGPELQLKTF 159


>tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1
          Length = 655

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 26/72 (36%), Positives = 39/72 (54%)
 Frame = +1

Query: 406 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 585
           KLY H+GG++P A+W+V+D+  +  F R                  +   W L+VGS++ 
Sbjct: 95  KLYLHIGGSSPSAKWIVSDRLAAASFVR-AGAGAGDGDDEDDDAPAAGGPWSLVVGSKIR 153

Query: 586 ARVGEKLQAKFF 621
           ARVG +LQ K F
Sbjct: 154 ARVGPELQLKAF 165


>tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana
           GN=F17M5.160 PE=2 SV=1
          Length = 645

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
 Frame = +1

Query: 331 LQSIGSKFDSLTLAGKRVAKGPQ---KAKLYRHLGGNTPKAQWVVADKAVSWEFTR-XXX 498
           L  + +K  +L L        P     A+L+R++ GNTPKA+WV A+K  ++ F +    
Sbjct: 63  LDDVEAKLQALKLKYPLTQSAPSTQNSARLFRYINGNTPKAKWVTAEKLTAYCFVKTNKG 122

Query: 499 XXXXXXXXXXXXVSGSWKTWYLLVGSRVSARVGEKLQAKFF 621
                       V   W  W L VGS++  +V +++Q K +
Sbjct: 123 DEDDEDDDENGDVENEW--WILKVGSKIREKVSDEMQLKAY 161