DK962577
Clone id TST39A01NGRL0014_D23
Library
Length 656
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_D23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GCTTCCTCATCCTCTTCTCGCAACTTCTGTCTATCGACCCCTGATAGCTCGCTGCTAGGG
TTTTGCGTCGACACTGCAGCACAGCTCCTCTCCTTCAAGCTTTCCCCCCTTGTGATCGTG
CTGCCATCATCGAAGCTATTTGCACAGAGTCAAGGCTTTTCATGGAGCTCCAGCGCTTCT
GCCATGCTCTACCTTGATCGTCCCTCCTTTCAGGCCCATTATAAGGTCTGATCTGGGGCT
GATCTGGGGTCCTAACGCAAGTTTATCAAAGGTTAAGTTAGCATTGTTGCGAATGGCTCA
ATGGTGGCATGCTAGCGTTGTTCATAAACACCCTCATCAGTATGTCACCTCCTACAGCTC
ATTGCAAACATGTACACGTATCACATGGAGGTCATTTCTGTCTCCTGCTGGCTGGGAATG
TCTGATCGTGCGAAAAAATTCTCCAGAACTCTTGTCAGATATGTCTTTGCCTTCCGCACC
AAATTTTCCGTCAATCAGCTGCTTTTGTGATGACGATCCATTAGTAACAGAGCACTTTTT
CAACAAGGATGGAAGCACTCTCACTCTACGTACTAAGTTGGAAATTATGTACAGTCCGTG
GGCAATGAGCATGCTAAATGGATATCAAATTCCAGTCAGGAAGTCTTTTAAAGAAT
■■Homology search results ■■ -
sp_hit_id Q6UWF5
Definition sp|Q6UWF5|YF002_HUMAN Putative uncharacterized protein UNQ5815/PRO19632 OS=Homo sapiens
Align length 75
Score (bit) 33.1
E-value 1.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962577|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_D23, 5'
(639 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6UWF5|YF002_HUMAN Putative uncharacterized protein UNQ5815/P... 33 1.2
sp|P15702|LEUK_MOUSE Leukosialin OS=Mus musculus GN=Spn PE=1 SV=1 32 2.1

>sp|Q6UWF5|YF002_HUMAN Putative uncharacterized protein
UNQ5815/PRO19632 OS=Homo sapiens GN=UNQ5815/PRO19632
PE=4 SV=1
Length = 114

Score = 33.1 bits (74), Expect = 1.2
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Frame = +3

Query: 135 KAFHG-APALLPCSTLIVPPFRPIIRSDLGLIWGPNASLSKVKLALLRMAQWWHASVVHK 311
++FH A L+ S +I+ P P L W + S S + ++ + WWHA +V +
Sbjct: 40 ESFHSKAEILVTLSQVIISPAGPH-----ALTWTTHFSPSVI---IILVPCWWHAVIVTQ 91

Query: 312 HP--HQYVTSYSSLQ 350
HP + YVT++ ++Q
Sbjct: 92 HPVANCYVTNHLNIQ 106


>sp|P15702|LEUK_MOUSE Leukosialin OS=Mus musculus GN=Spn PE=1 SV=1
Length = 395

Score = 32.3 bits (72), Expect = 2.1
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = -1

Query: 171 SMAEALELHEKP*LCANSFDDGSTITRGESLKERSCAAVSTQ------NPSSELSGV 19
S+ + E+H P A S + S++ RG S+ R + STQ +PS E SG+
Sbjct: 193 SLGPSSEMHGLPATTATSSVESSSVARGTSVSSRKTSTTSTQDPITTRSPSQESSGM 249


tr_hit_id A9U3Z5
Definition tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 100
Score (bit) 62.0
E-value 3.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962577|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_D23, 5'
(639 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella paten... 62 3e-08
tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella paten... 61 5e-08
tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella paten... 52 4e-05
tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea... 48 4e-04
tr|Q2QVY4|Q2QVY4_ORYSJ Putative uncharacterized protein OS=Oryza... 34 6.6

>tr|A9U3Z5|A9U3Z5_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_173543 PE=4 SV=1
Length = 262

Score = 62.0 bits (149), Expect = 3e-08
Identities = 37/100 (37%), Positives = 50/100 (50%)
Frame = +3

Query: 339 SSLQTCTRITWRSFLSPAGWECLIVRKNSPELLSDMSLPSAPNFPSISCFCDDDPLVTEH 518
S + + ++ FL WE L V + EL + + +P+I CF DDD E
Sbjct: 25 SKIHMLSSVSVSPFLVRTTWEDLSVPRLPSELTISDNCRVSSTYPAIVCFRDDD--APEL 82

Query: 519 FFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKSFKE 638
+D S L+ RT E+ YSPWAM MLNGY + FKE
Sbjct: 83 PVGRDLSDLSARTSFEVRYSPWAMQMLNGYGKKDKNDFKE 122


>tr|A9SVG7|A9SVG7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_84520 PE=4 SV=1
Length = 258

Score = 61.2 bits (147), Expect = 5e-08
Identities = 31/77 (40%), Positives = 47/77 (61%)
Frame = +3

Query: 378 FLSPAGWECLIVRKNSPELLSDMSLPSAPNFPSISCFCDDDPLVTEHFFNKDGSTLTLRT 557
FL WE ++V + S E +D +L A +P + CF DDD + E+ ++ S + +RT
Sbjct: 35 FLPRTAWEDMLVPRLSTEWTTD-TLTMATTYPVV-CFRDDDAPLPEYLVERNWSDMNVRT 92

Query: 558 KLEIMYSPWAMSMLNGY 608
LEI YSPWA+ M+NG+
Sbjct: 93 NLEIRYSPWAVEMMNGF 109


>tr|A9SQY4|A9SQY4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_230440 PE=4 SV=1
Length = 249

Score = 51.6 bits (122), Expect = 4e-05
Identities = 20/47 (42%), Positives = 32/47 (68%)
Frame = +3

Query: 468 FPSISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGY 608
+P + CF +DD E+ ++ S +++RT LEI YSPWA+ M+NG+
Sbjct: 55 YPLVVCFREDDAPFPEYLVERNWSDMSVRTNLEIQYSPWAIQMMNGF 101


>tr|A9NX68|A9NX68_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 264

Score = 48.1 bits (113), Expect = 4e-04
Identities = 38/120 (31%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Frame = +3

Query: 285 WWHASVVHKHPHQYVTSYSSLQTCTRITWRSFLSPAGWECLIVRKNSPELLSDMSLPSAP 464
WW +V H H S+S++ RSFL + W+ + N ++ + L
Sbjct: 11 WWRGNV---HTHFANPSFSTMAL------RSFLCRSTWDEINHGLNPNVDIAGLGLGLGL 61

Query: 465 N----FPS-ISCFCDDDPLVTEHFFNKDGSTLTLRTKLEIMYSPWAMSMLNGYQIPVRKS 629
PS + CF DDD ++ +L+LR EI YSPWA SMLNG +R+S
Sbjct: 62 GKLLAHPSCVVCFRDDDCPFPGSPLEREAGSLSLRPSSEIRYSPWAASMLNGLGENIRES 121


>tr|Q2QVY4|Q2QVY4_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=LOC_Os12g11220 PE=4 SV=1
Length = 197

Score = 34.3 bits (77), Expect = 6.6
Identities = 17/40 (42%), Positives = 22/40 (55%)
Frame = +1

Query: 40 RVLRRHCSTAPLLQAFPPCDRAAIIEAICTESRLFMELQR 159
++LRRH S P + A PPCDRA + RLF +R
Sbjct: 103 QLLRRHHSLPPQVSAAPPCDRATLSGGAGGRRRLFGAFRR 142