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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962604
Clone id TST39A01NGRL0014_F02
Library
Length 659
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_F02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CCGACACAGGCTTCATTCTGACACGCACATTTGCACATCCACGAGAGAATAGAGGAGCGG
ACTTCTGAATTTGCAACAATGGGTTCCGGACTTCTCTGCTTTTGGCCGCTCCTCGCCCTC
GTCAACCTCAACCCATAAAGAGTGAAGCATTTCCGTGTGCTCCGCAGGCGCGCTTCTTCT
CATCAAATACCAAAATTTTGCAGGCACAAGGAAATATTATGTTTGCCTTTGGTCAGAGTG
GTAACCGGTCTTACAACTCCGTGCACAAGTCTTTTTCAAATCAAAAGCCTGTGAAGCAGC
ATATGGCTGCTGACAGAAGATGTTATATTTTGGGATCGGTCACCAGAGCAAGCACCATCA
AGGCAACCACGCTGTTTAGATATAAATACCACGATGTTTTTTTATCAACACTTGGTGATC
ACTACAGTGAACATTCGTACCAACATTTCTGGTATGGCCGCTTGCCCTGCTTCTAACAGC
TAAGGGCGTTCTGCACCTCCTTGGTGCGTCTAGTGTTAGTCTTTAGCATTTTGGTGGCAT
AAATAATCAGCTAAGCAAGTAGGAGACATTGAGAGTCATGGCGGATTGCTCTGTTCAAAA
TTTTAGGGCATGGTCCCCGCGGTTCCAAACTAATTGTAAAGGGGTGCTTAATTTGTCTG
■■Homology search results ■■ -
sp_hit_id Q10328
Definition sp|Q10328|YD73_SCHPO Putative homeobox protein C32A11.03c OS=Schizosaccharomyces pombe
Align length 90
Score (bit) 32.7
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_F02, 5'
         (659 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10328|YD73_SCHPO Putative homeobox protein C32A11.03c OS=Sch...    33   1.7  
sp|Q9D2H6|SP2_MOUSE Transcription factor Sp2 OS=Mus musculus GN=...    32   3.9  
sp|Q5E9U0|SP2_BOVIN Transcription factor Sp2 OS=Bos taurus GN=SP...    32   3.9  
sp|P47793|WNT4A_DANRE Protein Wnt-4a OS=Danio rerio GN=wnt4a PE=...    31   6.6  
sp|Q02086|SP2_HUMAN Transcription factor Sp2 OS=Homo sapiens GN=...    31   6.6  
sp|Q31C64|GCP_PROM9 Probable O-sialoglycoprotein endopeptidase O...    31   6.6  
sp|Q71SV0|LAP4B_BOVIN Lysosomal-associated transmembrane protein...    30   8.6  

>sp|Q10328|YD73_SCHPO Putative homeobox protein C32A11.03c
           OS=Schizosaccharomyces pombe GN=SPAC32A11.03c PE=2 SV=1
          Length = 942

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 4/90 (4%)
 Frame = +3

Query: 75  NNGFRT--SLLLAAPRPRQPQPIKSEAFPCAPQARFFSSNTKILQAQGNIMFAFG--QSG 242
           NN F    S  L  P P QP  +KSE+ P   +       T + +A+ N+    G  +SG
Sbjct: 101 NNSFDNVNSSKLTNPSPVQPNIVKSESEPANSKQNEVVEATSVEKAKENVAHESGTPESG 160

Query: 243 NRSYNSVHKSFSNQKPVKQHMAADRRCYIL 332
                    S S  K  KQ + AD+  Y+L
Sbjct: 161 G--------STSAPKSKKQRLTADQLAYLL 182


>sp|Q9D2H6|SP2_MOUSE Transcription factor Sp2 OS=Mus musculus GN=Sp2
           PE=2 SV=2
          Length = 612

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +3

Query: 111 PRPRQPQPIKSEAFPCAPQARFFSSNTKILQAQGNIMFAFGQSGNRSYNSVHKSFSNQKP 290
           P PR+  PIK    P +P    FS    IL ++GNI+   G   + SY      F+ Q P
Sbjct: 62  PTPRKLVPIKPAPLPLSPCKNSFS----ILSSKGNILQIQGSQLSTSYPGGQFVFAIQNP 117


>sp|Q5E9U0|SP2_BOVIN Transcription factor Sp2 OS=Bos taurus GN=SP2
           PE=2 SV=1
          Length = 613

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 111 PRPRQPQPIKSEAFPCAPQARFFSSNTKILQAQGNIMFAFGQSGNRSYNSVHKSFSNQKP 290
           P PR+  PIK    P +P    F     IL ++GNI+   G   + SY      F+ Q P
Sbjct: 62  PTPRKLVPIKPAPLPLSPSKNSFG----ILSSKGNILQIQGSQLSTSYPGGQLVFAIQNP 117


>sp|P47793|WNT4A_DANRE Protein Wnt-4a OS=Danio rerio GN=wnt4a PE=2
           SV=1
          Length = 352

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 231 GQSGNRSYNSVHKSFSNQKPVKQHMAADRRCY-ILGSVTRASTIKATTLFR 380
           GQS NR+  ++H + + +K +  HM  + +C+ + GS    +  KA   FR
Sbjct: 178 GQSSNRALMNLHNNEAGRKAILNHMRVECKCHGVSGSCEVKTCWKAMPPFR 228


>sp|Q02086|SP2_HUMAN Transcription factor Sp2 OS=Homo sapiens GN=SP2
           PE=1 SV=3
          Length = 613

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 20/60 (33%), Positives = 27/60 (45%)
 Frame = +3

Query: 111 PRPRQPQPIKSEAFPCAPQARFFSSNTKILQAQGNIMFAFGQSGNRSYNSVHKSFSNQKP 290
           P PR+  PIK    P +P    F     IL ++GNI+   G   + SY      F+ Q P
Sbjct: 62  PTPRKLVPIKPAPLPLSPGKNSFG----ILSSKGNILQIQGSQLSASYPGGQLVFAIQNP 117


>sp|Q31C64|GCP_PROM9 Probable O-sialoglycoprotein endopeptidase
           OS=Prochlorococcus marinus (strain MIT 9312) GN=gcp PE=3
           SV=1
          Length = 356

 Score = 30.8 bits (68), Expect = 6.6
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = +3

Query: 213 NIMFAFGQSGNRSYNSVHKSFSNQKPVKQHMAADRRCYILGSVTRASTIKATTLFRYKYH 392
           N++   G + N +   +  S +N+K +K H+A    C        A+ I A  LFR K+ 
Sbjct: 273 NVVVVGGVAANNTLRKMMISEANKKSIKVHLAPLNLC-----TDNAAMIGAAALFRIKFK 327

Query: 393 D 395
           D
Sbjct: 328 D 328


>sp|Q71SV0|LAP4B_BOVIN Lysosomal-associated transmembrane protein 4B
           OS=Bos taurus GN=LAPTM4B PE=2 SV=1
          Length = 226

 Score = 30.4 bits (67), Expect = 8.6
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 391 WYLYLNSVVALMVLALVTDPKI*HLLSAAI 302
           WYL LN+VV L++L+ + DP   H  S+ +
Sbjct: 31  WYLILNAVVLLILLSALADPDHYHFSSSEL 60
tr_hit_id A1CTU9
Definition tr|A1CTU9|A1CTU9_ASPCL Ubiquitin-protein ligase (Asi3), putative OS=Aspergillus clavatus
Align length 35
Score (bit) 28.9
E-value 8.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_F02, 5'
         (659 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CTU9|A1CTU9_ASPCL Ubiquitin-protein ligase (Asi3), putative...    29   8.7  
tr|B2WZH7|B2WZH7_9HIV1 Envelope glycoprotein OS=Human immunodefi...    34   9.1  

>tr|A1CTU9|A1CTU9_ASPCL Ubiquitin-protein ligase (Asi3), putative
            OS=Aspergillus clavatus GN=ACLA_084310 PE=4 SV=1
          Length = 984

 Score = 28.9 bits (63), Expect(2) = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 110  SGQKQRSPEPIVANSEVRSSILSWMCKCACQNEAC 6
            SG     P+ ++  +  RS I++W C+C C  E C
Sbjct: 910  SGLGPDGPQCVICQTNPRS-IITWPCRCLCVCEEC 943



 Score = 22.7 bits (47), Expect(2) = 8.7
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -3

Query: 180 RRSAPAEHTEMLHSLWVEVDEGEERPKAE 94
           RR  P E +EML  L +       RP A+
Sbjct: 873 RRPTPEEESEMLEKLILSKRSEANRPAAD 901


>tr|B2WZH7|B2WZH7_9HIV1 Envelope glycoprotein OS=Human
           immunodeficiency virus 1 GN=pol PE=4 SV=1
          Length = 848

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 316 EDVI-FWDRSPEQAPSRQPRCLDINTTMFFYQHLVITTVNIRTNISGMAAC 465
           ED+I  WD+S +      P C+ +N T ++  +  IT  N   N +GM  C
Sbjct: 105 EDIISLWDQSLKPCVKLTPLCVTLNCTDYYPNNTEITNGNASNNDTGMKEC 155