DK962607 |
Clone id |
TST39A01NGRL0014_F05 |
Library |
TST39 |
Length |
578 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_F05. 5' end sequence. |
Accession |
DK962607 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2946Contig1 |
Sequence |
GCCACTCATGGCTGCATCCTCTGCCACTATGGTACCCTCATCCTCCTTCTCATCCGCCTT CTCCAACAGCATCACCGCCGGCCACACAGGTAAGATTGACCTCTCCTTCCTCTCTTCTTC ATTCCGTGGCTTCTCTGTGTCGTCAAGGTCTCCATTCTTCCCTTTCCAATTGCATCGTCC GGGACCGTCCGCATTTGTTGTGGCGACCCTCGCCAATGAGGTCATCTCCCCAGAACGAGT CCAAGAAACCCTACCTGATGTCTTCGACTTCAAGGCCTACATGAAATCCAAGGCTGCTTC TGTGCATAAAGCCCTTGAGGAGTGCGTGCCAATGCGCTCCCCAGAGAGGATTCATGACTC CGTGCGCTACTCCTTACTGGCTGGAGGAAAGCGGATAAGACCAGCGTTATGTATAGCCGC ATGCGAGCTCTTTGGAGGGACGGAAGCCATGGCCATGCCCTCTGCATGTGCATTAGAGAT GATTCATACAATGTCACTAATCCATGATGACCTTCCCTGCATGGATAATGATGATCTCAG GCGCGGAAAGCCTACTGACCACAAGGTCTTTGGTGAAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q42698 |
Definition |
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus |
Align length |
121 |
Score (bit) |
182.0 |
E-value |
1.0e-45 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962607|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_F05, 5' (578 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, c... 182 1e-45 sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, c... 180 5e-45 sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1,... 175 1e-43 sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, c... 170 4e-42 sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3,... 163 7e-40 sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 ... 162 1e-39 sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, c... 162 1e-39 sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 ... 160 6e-39 sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase hom... 139 1e-32 sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6,... 138 2e-32 sp|Q39108|GGR_ARATH Geranylgeranyl pyrophosphate synthase-relate... 127 4e-29 sp|Q08291|ISPA_BACST Geranyltranstransferase OS=Bacillus stearot... 110 7e-24 sp|P54383|ISPA_BACSU Geranyltranstransferase OS=Bacillus subtili... 108 1e-23 sp|O66126|ISPA_MICLU Geranyltranstransferase OS=Micrococcus lute... 97 6e-20 sp|O66952|ISPA_AQUAE Geranyltranstransferase OS=Aquifex aeolicus... 87 5e-17 sp|Q53479|IDSA_METTM Bifunctional short chain isoprenyl diphosph... 84 7e-16 sp|P22939|ISPA_ECOLI Geranyltranstransferase OS=Escherichia coli... 79 2e-14 sp|P45204|ISPA_HAEIN Geranyltranstransferase OS=Haemophilus infl... 77 5e-14 sp|P22873|CRTE_ESCVU Geranylgeranyl pyrophosphate synthetase OS=... 76 1e-13 sp|Q45220|ISPA_BRAJA Probable geranyltranstransferase OS=Bradyrh... 75 2e-13 sp|P55539|ISPA_RHISN Probable geranyltranstransferase OS=Rhizobi... 75 2e-13 sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthetase OS=... 75 2e-13 sp|O26156|IDSA_METTH Bifunctional short chain isoprenyl diphosph... 75 3e-13 sp|Q58270|IDSA_METJA Bifunctional short chain isoprenyl diphosph... 75 3e-13 sp|Q8K9A0|ISPA_BUCAP Geranyltranstransferase OS=Buchnera aphidic... 71 4e-12 sp|P17060|CRTE_RHOCA Geranylgeranyl pyrophosphate synthetase OS=... 70 8e-12 sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthetase OS=... 70 8e-12 sp|P95999|GGPS_SULSO Geranylgeranyl pyrophosphate synthetase OS=... 69 1e-11 sp|P57537|ISPA_BUCAI Geranyltranstransferase OS=Buchnera aphidic... 68 3e-11 sp|P39464|GGPS_SULAC Geranylgeranyl pyrophosphate synthetase OS=... 68 4e-11
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 Length = 357
Score = 182 bits (462), Expect = 1e-45 Identities = 88/121 (72%), Positives = 103/121 (85%) Frame = +2
Query: 215 NEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSLLAGGKR 394 +E S + V + FDFKAYM KA SV+KALE+ V +R P +IH+S+RYSLLAGGKR Sbjct: 48 SESKSKKEVAFSSSSSFDFKAYMIGKANSVNKALEDAVLVREPLKIHESMRYSLLAGGKR 107
Query: 395 IRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFG 574 +RP LCIAACELFGGTE++AMPSACA+EMIHTMSL+HDDLPCMDNDDLRRGKPT+HKVFG Sbjct: 108 VRPMLCIAACELFGGTESVAMPSACAVEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFG 167
Query: 575 E 577 E Sbjct: 168 E 168
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 Length = 370
Score = 180 bits (456), Expect = 5e-45 Identities = 85/134 (63%), Positives = 104/134 (77%) Frame = +2
Query: 176 RPGPSAFVVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIH 355 RP S + T E + E Q P FDFK+YM K S+++ALE +P++ P +IH Sbjct: 50 RPISSVSAIITKEEETLQEE--QNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIH 107
Query: 356 DSVRYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDD 535 +S+RYSLLAGGKR+RPALC+AACEL GG ++MAMP+ACA+EMIHTMSLIHDDLPCMDNDD Sbjct: 108 ESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDD 167
Query: 536 LRRGKPTDHKVFGE 577 LRRGKPT+H VFGE Sbjct: 168 LRRGKPTNHIVFGE 181
>sp|P34802|GGPP1_ARATH Geranylgeranyl pyrophosphate synthetase 1, chloroplastic OS=Arabidopsis thaliana GN=GGPS1 PE=2 SV=2 Length = 371
Score = 175 bits (444), Expect = 1e-43 Identities = 80/119 (67%), Positives = 100/119 (84%) Frame = +2
Query: 221 VISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSLLAGGKRIR 400 V + ++++ P FDF +Y+ +KA V+KAL+ VP+R P +IH+++RYSLLAGGKR+R Sbjct: 60 VTKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVR 119
Query: 401 PALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFGE 577 P LCIAACEL GG E+ AMP+ACA+EMIHTMSLIHDDLPCMDNDDLRRGKPT+HKVFGE Sbjct: 120 PVLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 178
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthetase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 Length = 366
Score = 170 bits (431), Expect = 4e-42 Identities = 77/105 (73%), Positives = 93/105 (88%) Frame = +2
Query: 263 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSLLAGGKRIRPALCIAACELFGGT 442 FDF +Y+ KA SV+KAL+ VP+R P +IH+++RYSLLAGGKR+RP LCIAACEL GG Sbjct: 70 FDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIAACELVGGE 129
Query: 443 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFGE 577 E++AMP+ CA+EMIHTMSLIHDDLPCMDNDDLRRGKPT+HKV+GE Sbjct: 130 ESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGE 174
>sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthetase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1 Length = 360
Score = 163 bits (412), Expect = 7e-40 Identities = 80/131 (61%), Positives = 96/131 (73%) Frame = +2
Query: 185 PSAFVVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSV 364 PS+ + + ++I PE FDFK YM KA SV+ AL+ VP+R P + ++V Sbjct: 38 PSSALTSQGGRDMIPPEGKCNDHNSAFDFKLYMIRKAESVNAALDVSVPLREPLTVQEAV 97
Query: 365 RYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRR 544 RYSLLAGGKR+RP LCIA CEL GG EA AM +ACA+EMIHT SLIHDDLPCMDN DLRR Sbjct: 98 RYSLLAGGKRVRPLLCIAVCELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDNADLRR 157
Query: 545 GKPTDHKVFGE 577 GKPT+HKV+GE Sbjct: 158 GKPTNHKVYGE 168
>sp|O04046|GGPP2_ARATH Geranylgeranyl pyrophosphate synthetase 2 OS=Arabidopsis thaliana GN=GGPP2 PE=2 SV=2 Length = 376
Score = 162 bits (410), Expect = 1e-39 Identities = 80/143 (55%), Positives = 103/143 (72%), Gaps = 7/143 (4%) Frame = +2
Query: 170 LHRPGPSAFVVATLANEVISPERVQETLPDV-------FDFKAYMKSKAASVHKALEECV 328 L R +AF+ + + + ER +E + F+F YM SKA SV+KALEE + Sbjct: 45 LSRKEVAAFLDSPIVEDEEGEEREEEEEGGIVSNANFTFEFDPYMMSKAESVNKALEEAI 104
Query: 329 PMRSPERIHDSVRYSLLAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHD 508 P+ P +IH+++RY++LA GKR+RP LC+A+CEL GG E AMP+ACA+EMIHTMSLI D Sbjct: 105 PVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQENAAMPAACAVEMIHTMSLIKD 164
Query: 509 DLPCMDNDDLRRGKPTDHKVFGE 577 DLPCMDNDDLRRGKPT HKV+GE Sbjct: 165 DLPCMDNDDLRRGKPTTHKVYGE 187
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthetase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 Length = 369
Score = 162 bits (409), Expect = 1e-39 Identities = 76/127 (59%), Positives = 98/127 (77%) Frame = +2
Query: 197 VVATLANEVISPERVQETLPDVFDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSL 376 + T +E I + +E F+FK Y+ KA SV+KAL+E + ++ P IH+++RYSL Sbjct: 58 IATTKEDERIEAAQTEEP----FNFKIYVTEKAISVNKALDEAIIVKEPHVIHEAMRYSL 113
Query: 377 LAGGKRIRPALCIAACELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPT 556 LAGGKR+RP LC+AACEL GG + AM +ACA+EMIHTMSLIHDDLPCMDNDDLRRGKPT Sbjct: 114 LAGGKRVRPMLCLAACELVGGNQENAMAAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPT 173
Query: 557 DHKVFGE 577 +HK++GE Sbjct: 174 NHKIYGE 180
>sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthetase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 Length = 372
Score = 160 bits (404), Expect = 6e-39 Identities = 72/105 (68%), Positives = 89/105 (84%) Frame = +2
Query: 263 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSLLAGGKRIRPALCIAACELFGGT 442 FDFK YM SKA ++++AL+E +P+ P IH ++RY++LAGGKR+RP LC+AACEL GG Sbjct: 79 FDFKPYMISKAETINRALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGE 138
Query: 443 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFGE 577 E +A+ +ACA+EMIHTMSLI DDLPCMDNDDLRRGKPT HKVFGE Sbjct: 139 ERLAIQAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVFGE 183
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthetase homolog OS=Cyanophora paradoxa GN=crtE PE=3 SV=1 Length = 300
Score = 139 bits (349), Expect = 1e-32 Identities = 64/105 (60%), Positives = 79/105 (75%) Frame = +2
Query: 263 FDFKAYMKSKAASVHKALEECVPMRSPERIHDSVRYSLLAGGKRIRPALCIAACELFGGT 442 F+ Y+ + V L + +P +P I+DS+RYSL AGGKRIRP LC+A+CEL GGT Sbjct: 8 FNLLTYLYERKEIVEDTLNKSIPRGNPTFIYDSIRYSLSAGGKRIRPILCLASCELAGGT 67
Query: 443 EAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFGE 577 MA+P+ACALEMIHTMSLIHDDLP MDND RRGKPT+H ++GE Sbjct: 68 MEMALPTACALEMIHTMSLIHDDLPAMDNDSYRRGKPTNHIIYGE 112
>sp|O22043|GGPP6_ARATH Geranylgeranyl pyrophosphate synthetase 6, mitochondrial OS=Arabidopsis thaliana GN=GGPP6 PE=2 SV=2 Length = 336
Score = 138 bits (348), Expect = 2e-32 Identities = 65/112 (58%), Positives = 84/112 (75%), Gaps = 8/112 (7%) Frame = +2
Query: 266 DFKAYMKSKAASVHKALEECVPM--------RSPERIHDSVRYSLLAGGKRIRPALCIAA 421 +F +YMK+KA S++KAL+ +P+ +H ++RY+LL GGKR+RP LC+ A Sbjct: 31 EFISYMKNKAKSINKALDNSIPLCNNFVPLWEPVLEVHKAMRYTLLPGGKRVRPMLCLVA 90
Query: 422 CELFGGTEAMAMPSACALEMIHTMSLIHDDLPCMDNDDLRRGKPTDHKVFGE 577 CEL GG E+ AMP+ACA+EMIH SLI DDLPCMD+D LRRGKPT+HKVFGE Sbjct: 91 CELVGGQESTAMPAACAVEMIHAASLILDDLPCMDDDSLRRGKPTNHKVFGE 142
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q8W1R9 |
Definition |
tr|Q8W1R9|Q8W1R9_ABIGR Geranylgeranyl diphosphate synthase OS=Abies grandis |
Align length |
124 |
Score (bit) |
184.0 |
E-value |
2.0e-45 |
Report |
|