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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962691
Clone id TST39A01NGRL0014_I19
Library
Length 655
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_I19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCACGGGAGGCCTTGATGTATATGTTTACGAACAACCCCTTCACACCGCACAGGGAAAGG
GCTTCATGTGGCAATCGTCGACGGATGTTGAAGCCTAGTCTCTAGCCTAACTACTAGCCG
GGGCCTTTGCTTCAACAAGTGCCTCATCGCATGGCTTTTGTGGGCGAAAGTCCTTGCTTT
TAGAGGGGGAGAGAGACAAAACACATACACACACAGACGGGGCGATGGGCAACTGCCAGG
CTGCAGAGATGGCAGGCGCTTTGGTGGAGGTGCCAGGGGGCCGCGTGGAGAGGGTGGTGA
TGGACATGCAGAGTTCCTTCTCTGCTCAACGTCTCATGTCCGCCTACCCTGGCTACTTCG
TGGCCCTCATGTCCAGCTCCTCCATCGTCCACCCCCTGGCCTTGCCTAGTACCCCCTCCA
GTACCTCTAACCCCGCTCCTCTGCATTCCTTCAAGCTTCTTGCCTCGGATGCACCTCTTC
GCAGCGGCCACCGTTATCGCCTTATCAGCTTTGAAGAAGTGCTTACTTGTTTCTCCCAGC
AAGGACCGGGCGCCTATGCGAAGGGCTTCCTGACGGCCGTGAATGCACACAAGCCACTAT
CGAGCAAGCATCATCACCTTACCAGAGATCAACCCTTGAACAATCATCATGTTGT
■■Homology search results ■■ -
sp_hit_id Q60963
Definition sp|Q60963|PAFA_MOUSE Platelet-activating factor acetylhydrolase OS=Mus musculus
Align length 59
Score (bit) 34.3
E-value 0.59
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962691|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_I19, 5'
         (655 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60963|PAFA_MOUSE Platelet-activating factor acetylhydrolase ...    34   0.59 
sp|Q28262|PAFA_CANFA Platelet-activating factor acetylhydrolase ...    31   6.5  

>sp|Q60963|PAFA_MOUSE Platelet-activating factor acetylhydrolase
           OS=Mus musculus GN=Pla2g7 PE=2 SV=1
          Length = 440

 Score = 34.3 bits (77), Expect = 0.59
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 468 DAPLRSGHRYRLISFEEVL----TCFSQQGPGAYAKGFLTAVNAHKPLSSKHHHLTRDQ 632
           ++PLR+G +Y LI F   L    T +S  G G  + GF+ A   H+  S+   +   DQ
Sbjct: 134 NSPLRTGEKYPLIVFSHGLGAFRTIYSAIGIGLASNGFIVATVEHRDRSASATYFFEDQ 192


>sp|Q28262|PAFA_CANFA Platelet-activating factor acetylhydrolase
           OS=Canis familiaris GN=PLA2G7 PE=2 SV=1
          Length = 444

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +3

Query: 468 DAPLRSGHRYRLISFEEVL----TCFSQQGPGAYAKGFLTAVNAHKPLSSKHHHLTRDQ 632
           ++PLR+G +Y LI F   L    T +S  G    + GF+ A   H+  S+   +  +DQ
Sbjct: 135 NSPLRTGEKYPLIVFSHGLGAFRTIYSAIGIDLASHGFIVAAIEHRDGSASATYYFKDQ 193
tr_hit_id Q9FJW1
Definition tr|Q9FJW1|Q9FJW1_ARATH Genomic DNA, chromosome 5, TAC clone: K9I9 (Putative uncharacterized protein At5g67620) (At5g67620) OS=Arabidopsis thaliana
Align length 104
Score (bit) 46.2
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962691|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_I19, 5'
         (655 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9FJW1|Q9FJW1_ARATH Genomic DNA, chromosome 5, TAC clone: K9I...    46   0.002
tr|A9SVH9|A9SVH9_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.011
tr|Q9FM06|Q9FM06_ARATH Arabidopsis thaliana genomic DNA, chromos...    43   0.015
tr|A7QZC0|A7QZC0_VITVI Chromosome chr7 scaffold_270, whole genom...    43   0.015
tr|B6U2N0|B6U2N0_MAIZE Putative uncharacterized protein OS=Zea m...    42   0.033
tr|Q10QE1|Q10QE1_ORYSJ Os03g0200200 protein OS=Oryza sativa subs...    42   0.043
tr|B8AQ49|B8AQ49_ORYSI Putative uncharacterized protein OS=Oryza...    42   0.043
tr|A3AF58|A3AF58_ORYSJ Putative uncharacterized protein OS=Oryza...    42   0.043
tr|B6SN59|B6SN59_MAIZE Putative uncharacterized protein OS=Zea m...    41   0.056
tr|A9SLF6|A9SLF6_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.056
tr|B6IDH9|B6IDH9_DROME RH62628p (Fragment) OS=Drosophila melanog...    36   0.46 
tr|B6TYG8|B6TYG8_MAIZE Putative uncharacterized protein OS=Zea m...    36   1.8  
tr|B4FZB9|B4FZB9_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|B4FPF9|B4FPF9_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|B4FJ61|B4FJ61_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.1  
tr|Q9GU02|Q9GU02_GIALA Chaperonin subunit delta CCTdelta (Fragme...    35   3.1  
tr|A8BFG4|A8BFG4_GIALA T-complex protein 1, delta subunit OS=Gia...    35   3.1  
tr|Q9DB74|Q9DB74_MOUSE Putative uncharacterized protein OS=Mus m...    34   6.8  
tr|Q921T4|Q921T4_MOUSE Phospholipase A2, group VII (Platelet-act...    34   6.8  
tr|Q8BKM3|Q8BKM3_MOUSE Phospholipase A2, group VII (Platelet-act...    34   6.8  
tr|Q3U1V7|Q3U1V7_MOUSE Putative uncharacterized protein (Fragmen...    34   6.8  
tr|Q0DXP1|Q0DXP1_ORYSJ Os02g0741700 protein OS=Oryza sativa subs...    34   6.8  
tr|B8AIE0|B8AIE0_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.8  

>tr|Q9FJW1|Q9FJW1_ARATH Genomic DNA, chromosome 5, TAC clone: K9I9
           (Putative uncharacterized protein At5g67620) (At5g67620)
           OS=Arabidopsis thaliana GN=At5g67620 PE=2 SV=1
          Length = 182

 Score = 46.2 bits (108), Expect = 0.002
 Identities = 35/104 (33%), Positives = 47/104 (45%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE A  L              +  S +A  +M + PG++VA++ +S  +     
Sbjct: 1   MGNCQAAEAATVLIHHPAENKVER---IYWSVTASDIMKSNPGHYVAVVVTSPTMKNEKG 57

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFS 536
                           KLL  D  L  GH YRL+SFEEVL  F+
Sbjct: 58  LPLK----------QLKLLRPDDTLLIGHVYRLVSFEEVLNEFA 91


>tr|A9SVH9|A9SVH9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84534 PE=4 SV=1
          Length = 569

 Score = 43.5 bits (101), Expect = 0.011
 Identities = 37/118 (31%), Positives = 47/118 (39%)
 Frame = +3

Query: 192 RDKTHTHTDGAMGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALM 371
           R K   H    MGNC A +   A               +  S SAQ+LM  YPG++VAL+
Sbjct: 163 RSKGLGHLWKRMGNCHAVDPVCATVEHPNGKVEK----LYFSSSAQQLMLQYPGHYVALV 218

Query: 372 SSSSIVHXXXXXXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQG 545
           S                          KLL     L  G  YRL+SFE+VL+  S +G
Sbjct: 219 S---------PPPTPIADCPAHVKRKLKLLPPGTMLNIGSCYRLVSFEDVLSEMSDKG 267


>tr|Q9FM06|Q9FM06_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MQB2 (Putative uncharacterized protein
           At5g62900) OS=Arabidopsis thaliana GN=At5g62900 PE=2
           SV=1
          Length = 161

 Score = 43.1 bits (100), Expect = 0.015
 Identities = 32/100 (32%), Positives = 45/100 (45%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE A  +            +    + +A  ++ ++PG+ VAL+ SS++ H    
Sbjct: 1   MGNCQAAEAATTVIQQPDGKS----VRFYCTVNASEVIKSHPGHHVALLLSSAVPHGGSL 56

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVL 524
                           KLL     L  GH YRLIS EEV+
Sbjct: 57  RVTR-----------IKLLRPSDNLLLGHVYRLISSEEVM 85


>tr|A7QZC0|A7QZC0_VITVI Chromosome chr7 scaffold_270, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00010584001
           PE=4 SV=1
          Length = 179

 Score = 43.1 bits (100), Expect = 0.015
 Identities = 34/104 (32%), Positives = 45/104 (43%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE A  +                 S SA  +M++ PG++VAL+ +S        
Sbjct: 1   MGNCQAAEAATVVIQHPGNKIERIYW----SVSAHEVMTSNPGHYVALVVTSPTAKSENG 56

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFS 536
                           KLL  D  L  G  YRL+SFE+VL  F+
Sbjct: 57  TPLK----------QLKLLRPDDTLLIGQVYRLVSFEDVLKEFA 90


>tr|B6U2N0|B6U2N0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 214

 Score = 42.0 bits (97), Expect = 0.033
 Identities = 35/106 (33%), Positives = 45/106 (42%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE A  L                 + SA  +M+A PG++VA +    I      
Sbjct: 1   MGNCQAAETATVLIQHPGGGRTERAY---WALSAGAVMAANPGHYVAAV----ITVPQPG 53

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQ 542
                           KLL  D  L+ G  YRL+SFEEVL  F+ +
Sbjct: 54  GAGDGAASAAAPVKHLKLLRPDDTLQLGRVYRLVSFEEVLREFASK 99


>tr|Q10QE1|Q10QE1_ORYSJ Os03g0200200 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0200200 PE=4 SV=1
          Length = 215

 Score = 41.6 bits (96), Expect = 0.043
 Identities = 33/106 (31%), Positives = 46/106 (43%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE+A  +                 + SA  +M+A PG++VA     +++     
Sbjct: 1   MGNCQAAEVATVVIQHPGGGRTERAY---WAMSAGAVMAANPGHYVA-----AVITSPPA 52

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQ 542
                           KLL  D  L  G  YRL+SFEEVL  F+ +
Sbjct: 53  AGASSATPAAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASK 98


>tr|B8AQ49|B8AQ49_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_10407 PE=4 SV=1
          Length = 215

 Score = 41.6 bits (96), Expect = 0.043
 Identities = 33/106 (31%), Positives = 46/106 (43%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE+A  +                 + SA  +M+A PG++VA     +++     
Sbjct: 1   MGNCQAAEVATVVIQHPGGGRTERAY---WAMSAGAVMAANPGHYVA-----AVITSPPA 52

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQ 542
                           KLL  D  L  G  YRL+SFEEVL  F+ +
Sbjct: 53  AGASSATGAAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASK 98


>tr|A3AF58|A3AF58_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_009430 PE=4 SV=1
          Length = 215

 Score = 41.6 bits (96), Expect = 0.043
 Identities = 33/106 (31%), Positives = 46/106 (43%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE+A  +                 + SA  +M+A PG++VA     +++     
Sbjct: 1   MGNCQAAEVATVVIQHPGGGRTERAY---WAMSAGAVMAANPGHYVA-----AVITSPPA 52

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQ 542
                           KLL  D  L  G  YRL+SFEEVL  F+ +
Sbjct: 53  AGASSANPAAAPVKHLKLLRPDDTLLLGRVYRLVSFEEVLREFASK 98


>tr|B6SN59|B6SN59_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 217

 Score = 41.2 bits (95), Expect = 0.056
 Identities = 35/106 (33%), Positives = 45/106 (42%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNCQAAE A  L                 + SA  +M+A PG++VA + +         
Sbjct: 1   MGNCQAAETATVLIQHPGGGRTERAY---WALSAGAVMAANPGHYVAAVITVPQPGGAGD 57

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQ 542
                        H  KLL  D  L  G  YRL+SFEEVL  F+ +
Sbjct: 58  DGAASASAAAPVKH-LKLLRPDDTLLLGRVYRLVSFEEVLREFASK 102


>tr|A9SLF6|A9SLF6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165563 PE=4 SV=1
          Length = 205

 Score = 41.2 bits (95), Expect = 0.056
 Identities = 33/111 (29%), Positives = 46/111 (41%)
 Frame = +3

Query: 225 MGNCQAAEMAGALXXXXXXXXXXXXMDMQSSFSAQRLMSAYPGYFVALMSSSSIVHXXXX 404
           MGNC A +   A                  S SA++LM  YPG++VAL+           
Sbjct: 1   MGNCHAVDPVCATVEHPSGKVDKIYF----SSSARQLMLRYPGHYVALLPPPPT------ 50

Query: 405 XXXXXXXXXXXXXHSFKLLASDAPLRSGHRYRLISFEEVLTCFSQQGPGAY 557
                           KLL  D+ L  G  YRL+SFE++L+  S+ G  A+
Sbjct: 51  --SPADGSTPHMKRKLKLLPPDSMLNIGSCYRLVSFEDLLSEMSETGALAH 99