NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962706
Clone id TST39A01NGRL0014_J10
Library
Length 595
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_J10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAAGGAGTTACTTTTCATTTCGTTACTTCTCGGTACGTGGAAGCGCAATTCAACACCCT
CTTCTTCTTCTCAAAACTGGGACGGAAGGATTCGAACCTCCGAGTGACGGGACCAAAACC
CGCTGCCTTACCGCTTGGCCACGCCCCACAAATGATTATTGCAACCAATATCTCACACAT
CGGCTTTACTGTCAACCGCTTCCCCCAACTTAACGACTCAACCTCCTAGGAAAAAGCAAC
TGAATAGGTGAATTGAATTTGATAGGAATTGCCGGTATTTGGCGAAAGAAAACTAATTGG
AAGCCTATTTAGGAGAGATTTGGTTTAACTAAGAATTGAATCTCCTGATACTTACCTCAT
TCAGATGCAGAAATCTATGATAATACGTAATCCTATTTATGTACGTGAACAAAAAAATCT
AGATGTCCGACAAGTTGCCCAATCAAACAATAAAGTATAAAAACATAGACATGTTAATAG
AAAATCACATGTTCCATAACTGGAGAGTAGACATGACAGTCTCGTACAGTATTTATCTAG
GAAAATTCTCTTCACTTTGGCGATGCCCTTTTGGCCAAGTTACCCGAAGCTTATG
■■Homology search results ■■ -
sp_hit_id Q85FN7
Definition sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS=Adiantum capillus-veneris
Align length 18
Score (bit) 40.4
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_J10, 5'
         (595 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K OS...    40   0.002
sp|Q9C000|NALP1_HUMAN NACHT, LRR and PYD domains-containing prot...    32   3.2  
sp|Q9CMX0|Y682_PASMU Uncharacterized protein PM0682 OS=Pasteurel...    31   4.1  
sp|Q5FU81|PSD_GLUOX Phosphatidylserine decarboxylase proenzyme O...    31   5.4  
sp|Q6MTA3|G6PI_MYCMS Glucose-6-phosphate isomerase OS=Mycoplasma...    30   7.0  
sp|Q99PQ1|TRI12_MOUSE Tripartite motif-containing protein 12 OS=...    30   9.2  

>sp|Q85FN7|PSBK_ADICA Photosystem II reaction center protein K
           OS=Adiantum capillus-veneris GN=psbK PE=2 SV=1
          Length = 58

 Score = 40.4 bits (93), Expect(2) = 0.002
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = +1

Query: 541 ENSLHFGDALLAKLPEAY 594
           ENSLHFGDALLAKLPEAY
Sbjct: 10  ENSLHFGDALLAKLPEAY 27



 Score = 21.6 bits (44), Expect(2) = 0.002
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 513 MTVSYSIYL 539
           MTVSYSIYL
Sbjct: 1   MTVSYSIYL 9


>sp|Q9C000|NALP1_HUMAN NACHT, LRR and PYD domains-containing protein
           1 OS=Homo sapiens GN=NLRP1 PE=1 SV=1
          Length = 1473

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 20/60 (33%), Positives = 25/60 (41%)
 Frame = +1

Query: 127 LTAWPRPTNDYCNQYLTHRLYCQPLPPT*RLNLLGKSN*IGELNLIGIAGIWRKKTNWKP 306
           LT   + T   C  YL   L  QPL P  R           +L  +   GIW+KKT + P
Sbjct: 540 LTLTSKTTTTLCLHYLAQALQAQPLGPQLR-----------DLCSLAAEGIWQKKTLFSP 588


>sp|Q9CMX0|Y682_PASMU Uncharacterized protein PM0682 OS=Pasteurella
           multocida GN=PM0682 PE=4 SV=1
          Length = 102

 Score = 31.2 bits (69), Expect = 4.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +G  QAVR RVL+ +  GSNPS P +
Sbjct: 2   LGYRQAVRHRVLISAFLGSNPSTPAI 27



 Score = 31.2 bits (69), Expect = 4.1
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = -3

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +G  QAVR RVL+ +  GSNPS P +
Sbjct: 42  LGYRQAVRHRVLISAFLGSNPSTPAI 67


>sp|Q5FU81|PSD_GLUOX Phosphatidylserine decarboxylase proenzyme
           OS=Gluconobacter oxydans GN=psd PE=3 SV=1
          Length = 225

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +2

Query: 80  GRKDSNLRVTGPKPAALPLGHAPQMIIATNISHIGFTVNRFPQLNDST 223
           GR  S   VT   PAAL +GH P   ++T +S +   +NR P   + T
Sbjct: 78  GRVTSVALVT--PPAALEMGHTPVWRVSTFLSVLNVHINRMPAAGEVT 123


>sp|Q6MTA3|G6PI_MYCMS Glucose-6-phosphate isomerase OS=Mycoplasma
           mycoides subsp. mycoides SC GN=pgi PE=3 SV=1
          Length = 427

 Score = 30.4 bits (67), Expect = 7.0
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +3

Query: 423 MSDKLPNQTIKYKNIDMLIENHMFHN-WRVDMTVSYSIYLGKFSSLWRCPFGQ 578
           ++D L NQ  KY     +I N++++  ++ D  +SY + L   +  W+  FG+
Sbjct: 229 INDDLSNQAYKYA----VIRNYLYNQGYKTDALISYELQLQMLTEWWKQLFGE 277


>sp|Q99PQ1|TRI12_MOUSE Tripartite motif-containing protein 12 OS=Mus
           musculus GN=Trim12 PE=2 SV=1
          Length = 284

 Score = 30.0 bits (66), Expect = 9.2
 Identities = 17/59 (28%), Positives = 31/59 (52%)
 Frame = -2

Query: 219 ESLSWGKRLTVKPMCEILVAIIICGAWPSGKAAGFGPVTRRFESFRPSFEKKKRVLNCA 43
           ES+   K++ + P+C I  +       P+   A    +  R + F+PS E++++V NCA
Sbjct: 44  ESIKCDKKVFICPVCRI--SYQFSNLRPNRNVAN---IVERLKMFKPSPEEEQKVFNCA 97
tr_hit_id A4QM00
Definition tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis
Align length 24
Score (bit) 50.1
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962706|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_J10, 5'
         (595 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1            50   1e-04
tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis G...    45   0.002
tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1            40   0.077
tr|Q5FGR1|Q5FGR1_EHRRG Putative uncharacterized protein OS=Ehrli...    39   0.29 
tr|Q5FCE4|Q5FCE4_EHRRW Putative uncharacterized protein OS=Ehrli...    39   0.29 
tr|A9NAS4|A9NAS4_COXBR Putative uncharacterized protein OS=Coxie...    38   0.50 
tr|A9ZGA2|A9ZGA2_COXBU Putative uncharacterized protein OS=Coxie...    38   0.50 
tr|Q2FW88|Q2FW88_STAA8 Putative uncharacterized protein OS=Staph...    37   0.65 
tr|Q3XYJ4|Q3XYJ4_ENTFC Putative uncharacterized protein OS=Enter...    37   0.86 
tr|A9MUH4|A9MUH4_SALPB Putative uncharacterized protein OS=Salmo...    35   2.5  
tr|A9MKB5|A9MKB5_SALAR Putative uncharacterized protein OS=Salmo...    35   2.5  
tr|A4NFS4|A4NFS4_HAEIN Putative uncharacterized protein OS=Haemo...    35   2.5  
tr|A4N490|A4N490_HAEIN Putative uncharacterized protein OS=Haemo...    35   2.5  
tr|A1A8T1|A1A8T1_ECOK1 Putative uncharacterized protein OS=Esche...    35   4.3  
tr|A4NSR7|A4NSR7_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.3  
tr|A4NMJ1|A4NMJ1_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.3  
tr|A4NA28|A4NA28_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.3  
tr|A4MV85|A4MV85_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.3  
tr|Q1CSX8|Q1CSX8_HELPH Putative uncharacterized protein OS=Helic...    34   5.6  
tr|B6JMB6|B6JMB6_HELP2 Putative uncharacterized protein OS=Helic...    34   5.6  
tr|A1A8T2|A1A8T2_ECOK1 Putative uncharacterized protein OS=Esche...    34   5.6  
tr|Q1RK88|Q1RK88_RICBR Putative uncharacterized protein OS=Ricke...    34   7.3  
tr|A6PN31|A6PN31_9BACT Major facilitator superfamily MFS_1 OS=Vi...    34   7.3  
tr|Q23E23|Q23E23_TETTH Putative uncharacterized protein OS=Tetra...    34   7.3  
tr|P91208|P91208_CAEEL Putative uncharacterized protein OS=Caeno...    34   7.3  
tr|Q3Z4C8|Q3Z4C8_SHISS Putative RNA OS=Shigella sonnei (strain S...    33   9.4  
tr|Q32IQ7|Q32IQ7_SHIDS Putative RNA OS=Shigella dysenteriae sero...    33   9.4  
tr|Q324N1|Q324N1_SHIBS Putative uncharacterized protein OS=Shige...    33   9.4  
tr|Q8X2E8|Q8X2E8_ECO57 Putative RNA OS=Escherichia coli O157:H7 ...    33   9.4  

>tr|A4QM00|A4QM00_PINKO ORF84b OS=Pinus koraiensis PE=4 SV=1
          Length = 84

 Score = 50.1 bits (118), Expect = 1e-04
 Identities = 22/24 (91%), Positives = 23/24 (95%)
 Frame = +2

Query: 77  LGRKDSNLRVTGPKPAALPLGHAP 148
           LGRKDSNLR+TG KPAALPLGHAP
Sbjct: 34  LGRKDSNLRITGSKPAALPLGHAP 57


>tr|Q57RQ5|Q57RQ5_SALCH Putative RNA OS=Salmonella choleraesuis
           GN=SCH_0700 PE=4 SV=1
          Length = 120

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 19/36 (52%), Positives = 26/36 (72%)
 Frame = +3

Query: 78  WDGRIRTSE*RDQNPLPYRLATPHK*LLQPISHTSA 185
           W  RIRTSE R+QNP+PYRLA P + + +P+ +  A
Sbjct: 84  WGTRIRTSECRNQNPVPYRLAIPQQIIFEPVEYLDA 119


>tr|Q85X74|Q85X74_PINKO ORF47d OS=Pinus koraiensis PE=4 SV=1
          Length = 47

 Score = 40.4 bits (93), Expect = 0.077
 Identities = 19/26 (73%), Positives = 22/26 (84%)
 Frame = -3

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVL 72
           +GRGQAVRQ+VL+   GGSNPSVP L
Sbjct: 3   MGRGQAVRQQVLILLFGGSNPSVPDL 28


>tr|Q5FGR1|Q5FGR1_EHRRG Putative uncharacterized protein
           OS=Ehrlichia ruminantium (strain Gardel)
           GN=ERGA_CDS_09470 PE=4 SV=1
          Length = 80

 Score = 38.5 bits (88), Expect = 0.29
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 79  GTEGFEPPSDGTKTRCLTAWPRP 147
           G EGFEP +DG K RCLT W  P
Sbjct: 3   GMEGFEPSNDGIKNRCLTTWLHP 25


>tr|Q5FCE4|Q5FCE4_EHRRW Putative uncharacterized protein
           OS=Ehrlichia ruminantium (strain Welgevonden)
           GN=ERWE_CDS_09550 PE=4 SV=1
          Length = 80

 Score = 38.5 bits (88), Expect = 0.29
 Identities = 15/23 (65%), Positives = 16/23 (69%)
 Frame = +1

Query: 79  GTEGFEPPSDGTKTRCLTAWPRP 147
           G EGFEP +DG K RCLT W  P
Sbjct: 3   GMEGFEPSNDGIKNRCLTTWLHP 25


>tr|A9NAS4|A9NAS4_COXBR Putative uncharacterized protein OS=Coxiella
           burnetii (strain RSA 331 / Henzerling II)
           GN=COXBURSA331_A2029 PE=4 SV=1
          Length = 45

 Score = 37.7 bits (86), Expect = 0.50
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 38  VEAQFNTLFFFSKLGRKDSNLRVTGPKPAALPLGHAPQ 151
           ++ +    F ++ LG +DSNL + G KP+ALPLG  P+
Sbjct: 7   IDVRHEVSFIYTWLGCQDSNLGMLGSKPSALPLGDTPR 44


>tr|A9ZGA2|A9ZGA2_COXBU Putative uncharacterized protein OS=Coxiella
           burnetii RSA 334 GN=COXBURSA334_2094 PE=4 SV=1
          Length = 45

 Score = 37.7 bits (86), Expect = 0.50
 Identities = 16/38 (42%), Positives = 25/38 (65%)
 Frame = +2

Query: 38  VEAQFNTLFFFSKLGRKDSNLRVTGPKPAALPLGHAPQ 151
           ++ +    F ++ LG +DSNL + G KP+ALPLG  P+
Sbjct: 7   IDVRHEVSFIYTWLGCQDSNLGMLGSKPSALPLGDTPR 44


>tr|Q2FW88|Q2FW88_STAA8 Putative uncharacterized protein
           OS=Staphylococcus aureus (strain NCTC 8325)
           GN=SAOUHSC_02412 PE=4 SV=1
          Length = 38

 Score = 37.4 bits (85), Expect = 0.65
 Identities = 17/27 (62%), Positives = 20/27 (74%)
 Frame = -3

Query: 149 VGRGQAVRQRVLVPSLGGSNPSVPVLR 69
           +G  QAVRQR L PSL GSNP+ P +R
Sbjct: 1   MGYSQAVRQRTLTPSLVGSNPASPAIR 27


>tr|Q3XYJ4|Q3XYJ4_ENTFC Putative uncharacterized protein
           OS=Enterococcus faecium DO GN=EfaeDRAFT_0835 PE=4 SV=1
          Length = 95

 Score = 37.0 bits (84), Expect = 0.86
 Identities = 16/30 (53%), Positives = 18/30 (60%)
 Frame = +1

Query: 64  LLLKTGTEGFEPPSDGTKTRCLTAWPRPTN 153
           L + TG  GFEP  +G K  CLTAW  P N
Sbjct: 34  LKIITGVAGFEPTHEGVKVPCLTAWLYPKN 63


>tr|A9MUH4|A9MUH4_SALPB Putative uncharacterized protein
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=SPAB_02869 PE=4 SV=1
          Length = 76

 Score = 35.4 bits (80), Expect = 2.5
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 79  GTEGFEPPSDGTKTRCLTAWPRPTNDYCNQYL 174
           G  GFEP + G K RCLTAW  P     N+ L
Sbjct: 3   GVPGFEPGNAGIKNRCLTAWRYPNTVAVNRKL 34