DK962726 |
Clone id |
TST39A01NGRL0014_K07 |
Library |
TST39 |
Length |
673 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_K07. 5' end sequence. |
Accession |
DK962726 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2323Contig1 |
Sequence |
GCGCAACACGAATTGCTGAGAAGCGCTGTATCTTCTTTCGTATTGCTGCTCAGATCCCTT AGTTGACCTCATTCTTATTCTGCTGAGCTCAGTCGCCTTGTTTCTGCGTCTGAATTGTGC TTTCATTCACACCAGCCTCTCTGGAGCCTCAGTCCTGCACCATGCGTGCTCACAGAGCTC TCTGTCTGGAGTTTTCTTCTGCTCGGTGCTGTTCTGAGGTTCCCATCCTCTTCTGCAACC GTGCTTTTGCTGGAGTACGAAGTCCTTTGAAGCCATTGGCGTTCTCAAGAGCAGGTGGAG ATGGAGGAGCTTTATCTTCGAAGACTCTGTACAGAGAGCCAAGTAGTTCTGCTAGGATCG AGCTGCTAGTTGCAAGATCAAGTGGTGCCAATGGAGATTCTTTGGGTCAAGATGAAGAAT TTGAGCAATGCGTTACCCATGATGGAGCTATTGTTGTCTGTGATGATCTTGACGCTCTGT TGCAAGTCTTGCCAGTGGATGTTAGAGACAACTTGCTTACCCACCCTCGAAGGTCGGAGC TTCTTGAGGTGGTTCTTGATCTTGGCAGGCGGCCTGAAGCCCGCTTTTTGGGTGATGGTG GAGGAGAGTTTCTGCGAAGTGAAGAGATCACCAGAGAAGATCTTGATGCAGCTCAATCAG CTGTAGGGGACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P51281 |
Definition |
sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea |
Align length |
74 |
Score (bit) |
67.4 |
E-value |
7.0e-11 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK962726|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0014_K07, 5' (673 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra ... 67 7e-11 sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella... 58 4e-08 sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium... 39 0.025 sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit ga... 32 2.3 sp|Q97EH4|EFG_CLOAB Elongation factor G OS=Clostridium acetobuty... 32 3.0 sp|P03340|GAG_FSVMD Gag polyprotein OS=Feline sarcoma virus (str... 32 3.1 sp|Q19375|IWS1_CAEEL IWS1-like protein OS=Caenorhabditis elegans... 32 4.0 sp|P10262|GAG_FLV Gag polyprotein OS=Feline leukemia virus GN=ga... 32 4.0 sp|Q4P5J4|HSE1_USTMA Class E vacuolar protein-sorting machinery ... 31 5.2 sp|P03338|GAG_FSVST Gag polyprotein OS=Feline sarcoma virus (str... 31 5.2 sp|P04322|GAG_FSVHZ Gag polyprotein (Fragment) OS=Feline sarcoma... 31 5.2 sp|Q9UHB4|NDOR1_HUMAN NADPH-dependent diflavin oxidoreductase 1 ... 30 8.8 sp|Q0B6M7|METE_BURCM 5-methyltetrahydropteroyltriglutamate--homo... 30 8.8 sp|Q30DN6|JAD1D_CANFA Histone demethylase JARID1D OS=Canis famil... 30 8.8 sp|Q04ED6|EFG_OENOB Elongation factor G OS=Oenococcus oeni (stra... 30 8.8
>sp|P51281|YCF45_PORPU Uncharacterized protein ycf45 OS=Porphyra purpurea GN=ycf45 PE=3 SV=1 Length = 565
Score = 67.4 bits (163), Expect = 7e-11 Identities = 35/74 (47%), Positives = 48/74 (64%) Frame = +3
Query: 450 IVVCDDLDALLQVLPVDVRDNLLTHPRRSELLEVVLDLGRRPEARFLGDGGGEFLRSEEI 629 +++ DDL+ LL++LP VR+ L H R L+EVV+DLGRRPEARF G E+L I Sbjct: 1 MLIADDLEKLLEILPHFVREPLKQHSNRKNLIEVVMDLGRRPEARF--PGNPEYLSQRSI 58
Query: 630 TREDLDAAQSAVGD 671 + +DLD VG+ Sbjct: 59 SWQDLDYCVKKVGN 72
>sp|P49540|YCF45_ODOSI Uncharacterized protein ycf45 OS=Odontella sinensis GN=ycf45 PE=3 SV=1 Length = 455
Score = 58.2 bits (139), Expect = 4e-08 Identities = 28/62 (45%), Positives = 44/62 (70%) Frame = +3
Query: 462 DDLDALLQVLPVDVRDNLLTHPRRSELLEVVLDLGRRPEARFLGDGGGEFLRSEEITRED 641 +DLD L++ LP +R N+ HP + +L+E+V+DLGRRPEARF G E+L + I+ +D Sbjct: 5 EDLDNLIKNLPFLIRQNINQHPSKQKLIEIVIDLGRRPEARF--TTGPEYLSQKVISWQD 62
Query: 642 LD 647 ++ Sbjct: 63 IN 64
>sp|O19920|YCF45_CYACA Uncharacterized protein ycf45 OS=Cyanidium caldarium GN=ycf45 PE=3 SV=1 Length = 335
Score = 38.9 bits (89), Expect = 0.025 Identities = 25/65 (38%), Positives = 38/65 (58%) Frame = +3
Query: 450 IVVCDDLDALLQVLPVDVRDNLLTHPRRSELLEVVLDLGRRPEARFLGDGGGEFLRSEEI 629 +++ +DL L V+P V +L HPR+ L E+VLD GRR E R+ E L ++I Sbjct: 1 MLIFNDLRHFLPVVPRFVYKSLKKHPRKFGLTEIVLDNGRRAEGRWREK--TENLTHKKI 58
Query: 630 TREDL 644 T++ L Sbjct: 59 TKKHL 63
>sp|Q2LL38|AAKG3_BOVIN 5'-AMP-activated protein kinase subunit gamma-3 OS=Bos taurus GN=PRKAG3 PE=2 SV=2 Length = 497
Score = 32.3 bits (72), Expect = 2.3 Identities = 29/81 (35%), Positives = 35/81 (43%), Gaps = 4/81 (4%) Frame = +1
Query: 82 AELSRLVSASELCFHSHQPLWSLSPAPCVLTELSVWSFLLLGAVLRFPS----SSATVLL 249 AEL + S F + P WS P E SFL G +PS +SA + L Sbjct: 4 AELEHALCGS--LFSTQTPSWSSFGGP----EHQEMSFLEQGDSTSWPSPAMTTSAEISL 57
Query: 250 LEYEVL*SHWRSQEQVEMEEL 312 E S W+SQE VE EL Sbjct: 58 GEQRTKVSRWKSQEDVEEREL 78
>sp|Q97EH4|EFG_CLOAB Elongation factor G OS=Clostridium acetobutylicum GN=fusA PE=3 SV=1 Length = 687
Score = 32.0 bits (71), Expect = 3.0 Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 4/88 (4%) Frame = +3
Query: 402 LGQDEEFEQCVT--HDGAIVVCDDLDALL--QVLPVDVRDNLLTHPRRSELLEVVLDLGR 569 +G+++ F + + AIV DDL + Q +P D+++ L RSE++E +++L Sbjct: 166 IGKEDNFLGLIDLIRNEAIVYTDDLGTTMEEQEIPADMKE--LAEKYRSEMIEAIVELDE 223
Query: 570 RPEARFLGDGGGEFLRSEEITREDLDAA 653 + ++L EEI+ E+++AA Sbjct: 224 --------ELMNKYLEGEEISVEEINAA 243
>sp|P03340|GAG_FSVMD Gag polyprotein OS=Feline sarcoma virus (strain McDonough) GN=gag PE=3 SV=1 Length = 536
Score = 32.0 bits (71), Expect = 3.1 Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 21/112 (18%) Frame = -1
Query: 463 SQTTIAPSWVTHCSNSSS*PKESPLAPLDLATSSSILAELLGSLYRVFEDKAPPSPPALE 284 S T PSWV P P PL S A SLY V PP PP L Sbjct: 165 SLATDPPSWVRPFL-----PPPKPPTPLPQPLSPQPSAPPTSSLYPVLPKTNPPKPPVLP 219
Query: 283 ---------------------NANGFKGLRTPAKARLQKRMGTSEQHRAEEN 191 + GLRTPA + + R+ ++ AEE+ Sbjct: 220 PDPSSPLIDLLTEEPPPYPGGHGPPPSGLRTPAASPIASRLRERRENPAEES 271
>sp|Q19375|IWS1_CAEEL IWS1-like protein OS=Caenorhabditis elegans GN=iws-1 PE=2 SV=1 Length = 511
Score = 31.6 bits (70), Expect = 4.0 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 13/88 (14%) Frame = -1
Query: 397 SPLAPLDLATSSSILAELLGSLYRVFEDK-------------APPSPPALENANGFKGLR 257 SPLAP+ + + G + +++D+ AP SP A A Sbjct: 23 SPLAPISPRSEGNAPESPSGDVQDIYKDESFEAPASPARDSSAPASPSAASPAGSRSPSP 82
Query: 256 TPAKARLQKRMGTSEQHRAEENSRQRAL 173 +P K + + + + E AEE++ +RAL Sbjct: 83 SPVKTKSKVMIDSDEDSDAEESANKRAL 110
>sp|P10262|GAG_FLV Gag polyprotein OS=Feline leukemia virus GN=gag PE=3 SV=1 Length = 580
Score = 31.6 bits (70), Expect = 4.0 Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 21/112 (18%) Frame = -1
Query: 463 SQTTIAPSWVTHCSNSSS*PKESPLAPLDLATSSSILAELLGSLYRVFEDKAPPSPPALE 284 S T PSWV P P PL S A L SLY V PP PP L Sbjct: 162 SLATDPPSWVRPFL-----PPPKPPTPLPQPLSPQPSAPLTSSLYPVVPKPDPPKPPVLP 216
Query: 283 ---------------------NANGFKGLRTPAKARLQKRMGTSEQHRAEEN 191 + G RTPA + + R+ ++ AEE+ Sbjct: 217 PDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIASRLRERRENPAEES 268
>sp|Q4P5J4|HSE1_USTMA Class E vacuolar protein-sorting machinery protein HSE1 OS=Ustilago maydis GN=HSE1 PE=3 SV=1 Length = 593
Score = 31.2 bits (69), Expect = 5.2 Identities = 28/85 (32%), Positives = 35/85 (41%) Frame = -1
Query: 349 ELLGSLYRVFEDKAPPSPPALENANGFKGLRTPAKARLQKRMGTSEQHRAEENSRQRAL* 170 E L S V ED+ P PP R TSEQ RAE+ +RAL Sbjct: 134 ESLKSQDAVAEDETPAEPP---------------------REPTSEQLRAEDEELRRAL- 171
Query: 169 ARMVQD*GSREAGVNESTIQTQKQG 95 +QD G R A + +T Q + G Sbjct: 172 ELSIQDQGGRNAWPSYNTEQAETSG 196
>sp|P03338|GAG_FSVST Gag polyprotein OS=Feline sarcoma virus (strain Snyder-Theilen) GN=gag PE=3 SV=1 Length = 371
Score = 31.2 bits (69), Expect = 5.2 Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 21/112 (18%) Frame = -1
Query: 463 SQTTIAPSWVTHCSNSSS*PKESPLAPLDLATSSSILAELLGSLYRVFEDKAPPSPPALE 284 S T PSWV P P PL S A L SLY V PP PP L Sbjct: 162 SLATDPPSWVRPFL-----PPPKPPTPLPQPLSPQPSAPLTSSLYPVVPKPDPPKPPVLP 216
Query: 283 ---------------------NANGFKGLRTPAKARLQKRMGTSEQHRAEEN 191 + G RTPA + + R+ ++ AEE+ Sbjct: 217 PDPSSPLIDLLTEEPPPYPGGHGPPPSGPRTPAASPIVSRLRERRENPAEES 268
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q2QW43 |
Definition |
tr|Q2QW43|Q2QW43_ORYSJ Expressed protein OS=Oryza sativa subsp. japonica |
Align length |
76 |
Score (bit) |
103.0 |
E-value |
1.0e-20 |
Report |
|