DK962772
Clone id TST39A01NGRL0014_M06
Library
Length 648
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_M06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GATATGTTGTGGGTAGACAAATACCGTCCCCATGCGCTCGACAAGGTGATGGTGCACGTC
GAAGAGGCTCAGCAACTCAAGCAGCTGGTAGCTCAGGGTGATTGCCCTCACCTTCTCTTC
TATGGGCCGTCAGGGGCGGGCAAAAAGACTCTTATCATTGCCCTGCTCCGTGAGATGTAT
GGTGCTGGAGCTGAGAAGATAAAAGTAGAGAATAAACCCTGGAAAATAGAGGCAGGTACA
CGCAAACTGGAAGTAGAACTGACTACAATCTCAAGCAACTATCATGTGGAGTTAAATCCG
AGTGACGCTGGTTTTCAAGATAGATATGTTGTGCAAGAGATTATCAAGGAGATGGCCAAG
AGCAGGCCACTTGATGTTGCTGGCAACAAGAGCTTCAAAGTACTCGTTTTGAATGAAGTT
GATAGACTCTCGAAAGAGGCGCAACATTCTCTTCGCCGTACTATGGAAAAGTACAGTTCA
GCTTGTAGGCTAATTTTGTGCTGCAACAGTGCCTCGAAGGTCATTGAAGCAGTTCGTTCG
CGTTGCTTGAACATTCGAATAAGTGCACCATCTAAAGAGGAGATTGTGAAAGTGCTTCAA
CATGTTGCCAAGAAAGAAGGCTTGCAGCTCCCTTTAGGGTTTGCTGCT
■■Homology search results ■■ -
sp_hit_id Q2TBV1
Definition sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
Align length 209
Score (bit) 250.0
E-value 4.0e-66
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962772|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M06, 5'
(648 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos tauru... 250 4e-66
sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus muscu... 248 2e-65
sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapi... 248 2e-65
sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3 OS=... 243 6e-64
sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospor... 207 5e-53
sp|O94697|RFC5_SCHPO Replication factor C subunit 5 OS=Schizosac... 202 1e-51
sp|P38251|RFC5_YEAST Replication factor C subunit 5 OS=Saccharom... 177 4e-44
sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subuni... 145 2e-34
sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncul... 135 2e-31
sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Metha... 134 4e-31
sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archa... 134 4e-31
sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Metha... 132 2e-30
sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Metha... 131 3e-30
sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Metha... 130 5e-30
sp|A2SQT3|RFCS_METLZ Replication factor C small subunit OS=Metha... 130 6e-30
sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aerop... 129 1e-29
sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Metha... 129 2e-29
sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Metha... 128 3e-29
sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Py... 127 5e-29
sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Metha... 126 1e-28
sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Py... 125 1e-28
sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfo... 125 2e-28
sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Py... 125 2e-28
sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picro... 125 3e-28
sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staph... 124 4e-28
sp|A3CUX9|RFCS_METMJ Replication factor C small subunit OS=Metha... 124 4e-28
sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Py... 124 6e-28
sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Py... 124 6e-28
sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoa... 122 2e-27
sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natro... 121 3e-27

>sp|Q2TBV1|RFC3_BOVIN Replication factor C subunit 3 OS=Bos taurus
GN=RFC3 PE=2 SV=1
Length = 356

Score = 250 bits (639), Expect = 4e-66
Identities = 122/209 (58%), Positives = 161/209 (77%)
Frame = +1

Query: 7 LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 186
LWVDKYRP +L ++ H E+A QL+ LV GD PHLL YGPSGAGKKT I+ +LRE+YG
Sbjct: 3 LWVDKYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 187 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 366
G EK+++E++ + K ++E++TI+SNYH+E+NPSDAG DR V+QE++K +A+S+
Sbjct: 63 GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 367 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 546
L+ + K FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI +RSRC
Sbjct: 120 QLETSSQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 547 LNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
L +R+ APS E+I VL V KKEGL LP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLP 208


>sp|Q8R323|RFC3_MOUSE Replication factor C subunit 3 OS=Mus musculus
GN=Rfc3 PE=2 SV=1
Length = 356

Score = 248 bits (634), Expect = 2e-65
Identities = 120/209 (57%), Positives = 161/209 (77%)
Frame = +1

Query: 7 LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 186
LWVDKYRP +L ++ H E+A QL+ LV GD PHLL YGPSGAGKKT I+ +LRE+YG
Sbjct: 3 LWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGI 62

Query: 187 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 366
G EK+++E++ + K ++E++TI+SNYH+E+NPSDAG DR V+QE++K +A+S+
Sbjct: 63 GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 367 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 546
L+ + + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI +RSRC
Sbjct: 120 QLETSSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 547 LNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
L +R+ APS E+I VL V +KEGL LP
Sbjct: 180 LAVRVPAPSIEDICSVLSTVCRKEGLALP 208


>sp|P40938|RFC3_HUMAN Replication factor C subunit 3 OS=Homo sapiens
GN=RFC3 PE=1 SV=2
Length = 356

Score = 248 bits (634), Expect = 2e-65
Identities = 121/209 (57%), Positives = 160/209 (76%)
Frame = +1

Query: 7 LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 186
LWVDKYRP +L ++ H E+A QL+ LV GD PHLL YGPSGAGKKT I+ +LRE+YG
Sbjct: 3 LWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGV 62

Query: 187 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 366
G EK+++E++ + K ++E++TI+SNYH+E+NPSDAG DR V+QE++K +A+S+
Sbjct: 63 GVEKLRIEHQTITTPS---KKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQ 119

Query: 367 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 546
L+ + FKV++L EVD+L+K+AQH+LRRTMEKY S CRLILCCNS SKVI +RSRC
Sbjct: 120 QLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179

Query: 547 LNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
L +R+ APS E+I VL V KKEGL LP
Sbjct: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLP 208


>sp|Q54BN3|RFC3_DICDI Probable replication factor C subunit 3
OS=Dictyostelium discoideum GN=rfc3 PE=3 SV=1
Length = 347

Score = 243 bits (620), Expect = 6e-64
Identities = 115/210 (54%), Positives = 162/210 (77%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLW+DKY+P +LDK+ H + + LK ++ GD PHLL YGPSGAGKKT I+A+L+E+YG
Sbjct: 1 MLWIDKYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVYGPSGAGKKTRILAVLQEIYG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
A K+K++++ +K ++ +++ TTISS+YH+E+NP +AG DR V+Q IIKE+A+S
Sbjct: 61 PNALKLKIDHRTFKHPTSSKNIQI--TTISSHYHIEINPGEAGSYDRVVIQTIIKEIAQS 118

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
P+D +FK+++LNEVD+LSK+AQH+LRRTMEKY++ CRLILCC+S +KVI+ ++SR
Sbjct: 119 PPIDSGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSR 178

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
CL IR+ APS+EEI KVL VA E LP
Sbjct: 179 CLGIRVPAPSQEEIEKVLAKVATAEKFDLP 208


>sp|Q8X082|RFC5_NEUCR Replication factor C subunit 5 OS=Neurospora
crassa GN=B14D6.460 PE=3 SV=1
Length = 352

Score = 207 bits (526), Expect = 5e-53
Identities = 104/211 (49%), Positives = 151/211 (71%)
Frame = +1

Query: 7 LWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGA 186
L VDK+RP +LD + H E +++L+ L GD PHLL YGPSGAGKKT I+A L+E+YG
Sbjct: 3 LIVDKHRPRSLDALTYHTELSERLRSLAQSGDFPHLLVYGPSGAGKKTRIVATLKELYGP 62

Query: 187 GAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSR 366
G EKIK++ + ++ + RKLE + ++S YH+E+ PSD G DR VVQ+++KE+A+++
Sbjct: 63 GVEKIKIDARVFQTSSN-RKLEFNI--VASVYHLEITPSDVGNYDRVVVQDLLKEVAQTQ 119

Query: 367 PLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRC 546
+D++ + FKV+V+NE D L+++AQ +LRRTMEKYS RLIL NS + +I +RSRC
Sbjct: 120 QVDLSAKQRFKVVVINEADHLTRDAQAALRRTMEKYSPNLRLILLANSTANIIAPIRSRC 179

Query: 547 LNIRISAPSKEEIVKVLQHVAKKEGLQLPLG 639
L +R++AP+ +EI VL AKKEG + G
Sbjct: 180 LLVRVAAPTHKEICDVLASSAKKEGWPIVKG 210


>sp|O94697|RFC5_SCHPO Replication factor C subunit 5
OS=Schizosaccharomyces pombe GN=rfc5 PE=1 SV=1
Length = 358

Score = 202 bits (514), Expect = 1e-51
Identities = 96/210 (45%), Positives = 152/210 (72%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLW+D+YRP L + H + +++L L + + PHLL YGPSGAGKKT ++A+LRE+YG
Sbjct: 1 MLWLDQYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVYGPSGAGKKTRVVAILRELYG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
G+EK+K++ + + + ++KL++ + +SS +H+E+ PSD G DR ++QE++K++A+S
Sbjct: 61 PGSEKLKIDQRTF-LTPSSKKLQINI--VSSLHHLEITPSDVGNYDRVIMQELLKDVAQS 117

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
+D+ K FKV+V+N D L+++AQ +LRRTMEKYS+ RLIL NS SK+IE +RSR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
L +R++AP+ EEI+ V+ + +GL+ P
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAP 207


>sp|P38251|RFC5_YEAST Replication factor C subunit 5
OS=Saccharomyces cerevisiae GN=RFC5 PE=1 SV=1
Length = 354

Score = 177 bits (449), Expect = 4e-44
Identities = 97/214 (45%), Positives = 137/214 (64%), Gaps = 6/214 (2%)
Frame = +1

Query: 7 LWVDKYRPHALDKVMVHVEEAQQLKQLVAQG-DCPHLLFYGPSGAGKKTLIIALLREMYG 183
LWVDKYRP +L+ + + E LK L Q D PHLL YGP+G GKKT +ALL ++G
Sbjct: 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFG 62

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
G ++K++ + + + A RKLE L +SS YH+E+ PSD G DR V+QE++KE+A+
Sbjct: 63 PGVYRLKIDVRQF-VTASNRKLE--LNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQM 119

Query: 364 RPLDVAGNKS-----FKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIE 528
+D +K +K +++NE + L+K+AQ +LRRTMEKYS RLI+ C+S S +I
Sbjct: 120 EQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 179

Query: 529 AVRSRCLNIRISAPSKEEIVKVLQHVAKKEGLQL 630
++SRCL IR APS EI +L V E +QL
Sbjct: 180 PIKSRCLLIRCPAPSDSEISTILSDVVTNERIQL 213


>sp|Q5UQE8|RFCS2_MIMIV Putative replication factor C small subunit
L478 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L478
PE=3 SV=1
Length = 370

Score = 145 bits (365), Expect = 2e-34
Identities = 73/210 (34%), Positives = 125/210 (59%), Gaps = 1/210 (0%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
M + +KYRP + + + +QLK L + D PH++ GPSG+GKKTL+ LL +Y
Sbjct: 1 MFFFEKYRPKKPSDFLFNTDVLRQLKYLASNEDVPHIIISGPSGSGKKTLVKFLLEFLYD 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
++ + + I + K E+E+ + SNYH+ + P+ D+Y++QEIIK+ A
Sbjct: 61 EDVNILR--KRKYNINGSSTKKEIEI--LQSNYHIIIEPTSTN-HDKYILQEIIKQYAMH 115

Query: 364 RPLDVAGNK-SFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRS 540
+ D+ K FK +V++ ++ L+ +Q +LRRTME+Y+ CR I+ CN+ SK+++ +RS
Sbjct: 116 KSFDIFKTKRKFKTIVIHNIENLANNSQAALRRTMERYAKTCRFIMVCNNLSKIMDPLRS 175

Query: 541 RCLNIRISAPSKEEIVKVLQHVAKKEGLQL 630
RC + P+ E I V+ ++A E ++L
Sbjct: 176 RCRTFCVPLPTIENINTVVDYIAFMENIKL 205


>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit
OS=Uncultured methanogenic archaeon RC-I GN=rfcS PE=3
SV=1
Length = 322

Score = 135 bits (340), Expect = 2e-31
Identities = 79/210 (37%), Positives = 114/210 (54%)
Frame = +1

Query: 1 DMLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMY 180
D +W +KYRP L+ V+ H + ++L V G+ PHLLF GP G GK +AL RE+Y
Sbjct: 4 DEIWTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELY 63

Query: 181 GAGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAK 360
G T SN+ +ELN SD D VV+ IK A+
Sbjct: 64 GE--------------------------TWHSNF-IELNASDERGID--VVRNNIKNFAR 94

Query: 361 SRPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRS 540
+ PL G FK++ L+E D L+ +AQ +LRRTME+Y++ CR I+ CN +SK+IE ++S
Sbjct: 95 TAPL---GEAKFKIIFLDEADALTSDAQSALRRTMERYAATCRFIISCNYSSKIIEPIQS 151

Query: 541 RCLNIRISAPSKEEIVKVLQHVAKKEGLQL 630
RC R + +I + +AK EGL++
Sbjct: 152 RCAVYRFGPLNATDITTGITRIAKNEGLKI 181


>sp|A6US36|RFCS_METVS Replication factor C small subunit
OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM
1224) GN=rfcS PE=3 SV=1
Length = 315

Score = 134 bits (337), Expect = 4e-31
Identities = 78/207 (37%), Positives = 117/207 (56%)
Frame = +1

Query: 10 WVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYGAG 189
WV+KYRP LD+V+ H E ++LK V + PHLLF G G GK T + L +++YG
Sbjct: 5 WVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYG-- 62

Query: 190 AEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKSRP 369
WK N+ +ELN SD D V++ +K+ A+++P
Sbjct: 63 --------NTWK----------------ENF-LELNSSDERGID--VIRTKVKDFARTKP 95

Query: 370 LDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSRCL 549
+ G+ FKV+ L+E D L+ +AQ++LRRTMEKYS CR +L CN SK+I ++SRC
Sbjct: 96 I---GDAPFKVIFLDESDALTSDAQNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCA 152

Query: 550 NIRISAPSKEEIVKVLQHVAKKEGLQL 630
R S E++VK L+ +++KE + +
Sbjct: 153 IFRFSPLKTEDLVKNLKEISEKESINV 179


tr_hit_id A9SKH1
Definition tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 210
Score (bit) 364.0
E-value 2.0e-99
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK962772|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M06, 5'
(648 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella paten... 364 2e-99
tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidop... 342 9e-93
tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Or... 338 2e-91
tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subs... 337 5e-91
tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza... 337 5e-91
tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza... 337 5e-91
tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea may... 333 5e-90
tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medic... 332 2e-89
tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea m... 332 2e-89
tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome... 324 2e-87
tr|A8J3U8|A8J3U8_CHLRE DNA replication factor C complex subunit ... 304 3e-81
tr|A4RWV3|A4RWV3_OSTLU Predicted protein OS=Ostreococcus lucimar... 272 1e-71
tr|Q01A06|Q01A06_OSTTA Putative replication factor (ISS) OS=Ostr... 271 3e-71
tr|B6N1Z4|B6N1Z4_BRAFL Putative uncharacterized protein OS=Branc... 259 8e-68
tr|B6KYC6|B6KYC6_BRAFL Putative uncharacterized protein OS=Branc... 257 5e-67
tr|Q5ZJP0|Q5ZJP0_CHICK Putative uncharacterized protein OS=Gallu... 253 7e-66
tr|Q4QQP4|Q4QQP4_XENLA MGC115007 protein OS=Xenopus laevis GN=rf... 251 3e-65
tr|Q8AW06|Q8AW06_DANRE Replication factor C (Activator 1) 3 OS=D... 250 5e-65
tr|A7MCR5|A7MCR5_DANRE Replication factor C (Activator 1) 3 OS=D... 250 5e-65
tr|Q5M830|Q5M830_RAT Replication factor C (Activator 1) 3 OS=Rat... 250 5e-65
tr|B3RWK4|B3RWK4_TRIAD Putative uncharacterized protein OS=Trich... 250 5e-65
tr|A7S695|A7S695_NEMVE Predicted protein OS=Nematostella vectens... 249 1e-64
tr|Q8BY26|Q8BY26_MOUSE Putative uncharacterized protein OS=Mus m... 248 2e-64
tr|Q3TKD1|Q3TKD1_MOUSE Putative uncharacterized protein OS=Mus m... 248 2e-64
tr|Q4R5E8|Q4R5E8_MACFA Brain cDNA, clone: QnpA-15666, similar to... 248 2e-64
tr|Q5W0E8|Q5W0E8_HUMAN Replication factor C (Activator 1) 3, 38k... 248 2e-64
tr|Q5U0C2|Q5U0C2_HUMAN Replication factor C (Activator 1) 3, 38k... 248 2e-64
tr|A8MX32|A8MX32_HUMAN Putative uncharacterized protein RFC3 OS=... 248 2e-64
tr|B4DKE6|B4DKE6_HUMAN cDNA FLJ60629, highly similar to Replicat... 248 3e-64
tr|Q53HK8|Q53HK8_HUMAN Replication factor C 3 isoform 1 variant ... 247 4e-64

>tr|A9SKH1|A9SKH1_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_185915 PE=4 SV=1
Length = 354

Score = 364 bits (935), Expect = 2e-99
Identities = 176/210 (83%), Positives = 197/210 (93%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKVMVH EEA LK L+AQGDCPHLLFYGPSGAGKKTLI+ALLREM+G
Sbjct: 1 MLWVDKYRPRTLDKVMVHKEEATNLKNLIAQGDCPHLLFYGPSGAGKKTLIMALLREMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
+ AEK+KVENKPWK+EAGTRK+EVELTT+SSN+HVELNPSDAGFQDRYVVQEIIK+MAK+
Sbjct: 61 SSAEKVKVENKPWKVEAGTRKIEVELTTVSSNHHVELNPSDAGFQDRYVVQEIIKDMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RPLDVAGN+ FKVLVLNEVD+LSKEAQHSLRRTMEKYS+ACRL+LCCNSASKVIEAVRSR
Sbjct: 121 RPLDVAGNRGFKVLVLNEVDKLSKEAQHSLRRTMEKYSAACRLLLCCNSASKVIEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLP 633
C+NIRI++PS+++IV VL VAKKE L LP
Sbjct: 181 CVNIRINSPSRDDIVDVLMFVAKKENLILP 210


>tr|Q8VXX4|Q8VXX4_ARATH Putative replication factor C OS=Arabidopsis
thaliana GN=At5g27740 PE=2 SV=1
Length = 354

Score = 342 bits (878), Expect = 9e-93
Identities = 162/215 (75%), Positives = 197/215 (91%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP +LDKV+VH + AQ+LK+LV++ DCPHLLFYGPSG+GKKTLI+ALL+++YG
Sbjct: 1 MLWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
A AEK+KVEN+ WK++AG+R +++ELTT+SS HVEL PSDAGFQDRY+VQEIIKEMAK+
Sbjct: 61 ASAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G K +KVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EA++SR
Sbjct: 121 RPIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+RI+APS+EEIVKVL+ VAKKE LQLP GFAA
Sbjct: 181 CLNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAA 215


>tr|Q84N07|Q84N07_ORYSJ Replication factor C 38 kDa subunit OS=Oryza
sativa subsp. japonica GN=OsRFC5 PE=2 SV=1
Length = 354

Score = 338 bits (867), Expect = 2e-91
Identities = 156/215 (72%), Positives = 195/215 (90%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGA+K+K+ENK WKI+ G+R +E+EL +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+DV G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDVKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE LQLP GFAA
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAA 215


>tr|Q852K3|Q852K3_ORYSJ Os03g0792600 protein OS=Oryza sativa subsp.
japonica GN=OSJNBb0060J21.20 PE=2 SV=1
Length = 354

Score = 337 bits (863), Expect = 5e-91
Identities = 155/215 (72%), Positives = 194/215 (90%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGA+K+K+ENK WKI+ G+R +E+EL +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE LQLP GFAA
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAA 215


>tr|A3ANI3|A3ANI3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_012355 PE=4 SV=1
Length = 418

Score = 337 bits (863), Expect = 5e-91
Identities = 155/215 (72%), Positives = 194/215 (90%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 65 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 124

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGA+K+K+ENK WKI+ G+R +E+EL +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 125 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 184

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 185 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 244

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE LQLP GFAA
Sbjct: 245 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAA 279


>tr|A2XMT5|A2XMT5_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_13856 PE=4 SV=1
Length = 354

Score = 337 bits (863), Expect = 5e-91
Identities = 155/215 (72%), Positives = 194/215 (90%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ LK+LVA+ DCPHLLFYGPSG+GKKTL++AL+++M+G
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLKKLVAEQDCPHLLFYGPSGSGKKTLVMALIKQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGA+K+K+ENK WKI+ G+R +E+EL +SS +HVE+NPSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 AGADKVKMENKTWKIDTGSRNIEIELAMLSSAHHVEMNPSDAGFQDRYVVQEVIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE LQLP GFAA
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLQLPFGFAA 215


>tr|B6T5I0|B6T5I0_MAIZE Replication factor C subunit 5 OS=Zea mays
PE=2 SV=1
Length = 354

Score = 333 bits (854), Expect = 5e-90
Identities = 155/215 (72%), Positives = 191/215 (88%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+G
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGAEK+K+ENK WKI+ GTR LE+EL +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTLEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE L LP GFAA
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAA 215


>tr|B7FHM5|B7FHM5_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 262

Score = 332 bits (850), Expect = 2e-89
Identities = 155/215 (72%), Positives = 189/215 (87%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LD MVH + AQ LK+LV + DCPHLLFYGPSGAGKKTLI+ALLR+M+G
Sbjct: 1 MLWVDKYRPKTLDHAMVHSDIAQNLKKLVTEHDCPHLLFYGPSGAGKKTLIMALLRQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
GAEK+KVEN+ WK++AG+R +++ELTT+SS H+E+ PSDAGFQDRY+VQEIIKEMAK+
Sbjct: 61 PGAEKVKVENRAWKVDAGSRSIDLELTTLSSANHIEMTPSDAGFQDRYIVQEIIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G K FKVLVLN+VD+LS+EAQHSLRRTMEKYS+ CRL+LCCNS+S+V EA+RSR
Sbjct: 121 RPIDTKGKKGFKVLVLNDVDKLSREAQHSLRRTMEKYSAYCRLVLCCNSSSRVTEAIRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+RI+APS+E+IV+VLQ + KKEGLQLP AA
Sbjct: 181 CLNVRINAPSEEQIVEVLQFIGKKEGLQLPSSLAA 215


>tr|B4FER3|B4FER3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 354

Score = 332 bits (850), Expect = 2e-89
Identities = 154/215 (71%), Positives = 190/215 (88%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LDKV VH + AQ L++ V++ DCPHLLFYGPSG+GKKTLI+AL+++M+G
Sbjct: 1 MLWVDKYRPKTLDKVTVHDQVAQNLRKFVSEQDCPHLLFYGPSGSGKKTLILALIKQMFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
AGAEK+K+ENK WKI+ GTR E+EL +SS +HVE+ PSDAGFQDRYVVQE+IKEMAK+
Sbjct: 61 AGAEKVKLENKTWKIDTGTRTFEIELAMLSSAHHVEMTPSDAGFQDRYVVQEVIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G ++FKVLVLNEVD+LS+EAQHSLRRTMEKYSS+CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDAKGKRAFKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFAA 648
CLN+R++APS+++IV+VL+ + KKE L LP GFAA
Sbjct: 181 CLNVRVNAPSEDQIVQVLEFIGKKENLHLPAGFAA 215


>tr|A7PZY4|A7PZY4_VITVI Chromosome chr8 scaffold_41, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027060001
PE=4 SV=1
Length = 354

Score = 324 bits (831), Expect = 2e-87
Identities = 154/214 (71%), Positives = 187/214 (87%)
Frame = +1

Query: 4 MLWVDKYRPHALDKVMVHVEEAQQLKQLVAQGDCPHLLFYGPSGAGKKTLIIALLREMYG 183
MLWVDKYRP LD ++VH + AQ LK+LV + DCPHLLFYGP G+GKKTLI+A+LR+++G
Sbjct: 1 MLWVDKYRPKTLDNLIVHDDVAQNLKKLVTEQDCPHLLFYGPPGSGKKTLIMAILRQIFG 60

Query: 184 AGAEKIKVENKPWKIEAGTRKLEVELTTISSNYHVELNPSDAGFQDRYVVQEIIKEMAKS 363
+ VENK WKI+AGTR +++ELTT+SS +H+ELNP DAGFQDRY+VQEIIKEMAK+
Sbjct: 61 KFLFILSVENKTWKIDAGTRTIDLELTTLSSTHHMELNPGDAGFQDRYIVQEIIKEMAKN 120

Query: 364 RPLDVAGNKSFKVLVLNEVDRLSKEAQHSLRRTMEKYSSACRLILCCNSASKVIEAVRSR 543
RP+D G K F+VLVLNEVDRLS+EAQHSLRRTMEKYS++CRLILCCNS+SKV EAVRSR
Sbjct: 121 RPIDTKGKKGFRVLVLNEVDRLSREAQHSLRRTMEKYSASCRLILCCNSSSKVTEAVRSR 180

Query: 544 CLNIRISAPSKEEIVKVLQHVAKKEGLQLPLGFA 645
CLNIRI+AP++E+I KVL+ +AKKEGLQLP GFA
Sbjct: 181 CLNIRINAPTEEQITKVLEFIAKKEGLQLPSGFA 214