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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962777
Clone id TST39A01NGRL0014_M11
Library
Length 548
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_M11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGATGAGGCGCGCGCCAGCAGGTGCTGTCCTTGCGAGAAGACGGCTGCACAACAGGTTAT
GGAAGGTGATTGCATTCAAGGGGGTTGCTCTACAGGCTCAGGTGGCGAGGACGTGGCAGC
AAGAGCTTTTTCATGCGTTGTTCTGCTCGTTTAATGCCGCAGGCGGGCTTCTCAAGGTCG
TTGAAGGCGATCGTGCAGGCTGAGGTTATGAGCACTGATTGTGTTGCTCTTCGTGGTTCA
GTACACGTGCTGAATGGAGCACGAGACATGTAATTTCCATGTACTTATTGTAGCCTATAT
GACAGGCCAGAAAGGGCAGAAAAATGCTTTGTAATAGGTTCTTGTTTCGGGTGGTTATCA
TTATATTGTGTCATGGCAGCAAGTATGAGGATTTGTTTTGATGTATGAGCTTTTGAGCTA
CATTATCTAGTGGAAGATTCTTTGTCTGTCCTGCTTTGTACAAGCTTTTGAGCTACATTA
TCTAGTGGAAGATTCTCTCTCTGTTTTGCCTTTGCAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962777|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M11, 5'
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M...    32   1.3  
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein...    31   3.0  

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
           musculus GN=Zdhhc24 PE=2 SV=2
          Length = 284

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 310 LACHIGYNKYMEITCLVLHSARVLNH 233
           L C +G++ Y    CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
           tatB homolog OS=Pseudomonas stutzeri (strain A1501)
           GN=tatB PE=3 SV=1
          Length = 139

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -2

Query: 259 LHSARVLNHEEQHNQCS*PQPARSPSTTLRSPPA 158
           LH+ R+L+ E +  Q   P PA +P+ T  SPP+
Sbjct: 63  LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96
tr_hit_id B6PLH6
Definition tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 60
Score (bit) 36.2
E-value 0.98
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962777|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M11, 5'
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc...    36   0.98 
tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branc...    35   1.7  
tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta Mad-...    33   6.4  

>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
          Length = 1131

 Score = 36.2 bits (82), Expect = 0.98
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -1

Query: 419 SSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCT 240
           S ++   +Q+ ++A + QY+  HP+  P+ + F  LS L         NY SRAP  T T
Sbjct: 91  SFRSFRLEQVRLVACVCQYSSEHPQALPMDQLFQGLSQLPKTETTDISNYFSRAPEETTT 150


>tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_116539 PE=4 SV=1
          Length = 370

 Score = 35.4 bits (80), Expect = 1.7
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -2

Query: 304 CHIGYNKYMEITCLVLHSARVLNHEEQHNQ------CS*PQPARSPSTTLRSPPAALNEQ 143
           C  G +K+ E  C +  S   +N + ++N       C   +P   P   L SPPA  N Q
Sbjct: 106 CDCGNSKFPENKCKLDPSKAPVNTDNKYNHNFHGLYCICDRPYPDPDDEL-SPPAFFNPQ 164

Query: 142 NNA*KSSCCHV 110
           NN    +CC++
Sbjct: 165 NNTKSYTCCNL 175


>tr|B8P5Z3|B8P5Z3_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_95687 PE=4 SV=1
          Length = 785

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 21/67 (31%), Positives = 33/67 (49%)
 Frame = -1

Query: 335 ITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIAFNDLEKPACG 156
           I++H S L     + Q ++  Y++R+P ST  EP   TQSV      +++FN     A G
Sbjct: 383 ISQHVSTLRQRDQQQQALYQQYLNRSP-STPPEPSYGTQSVAAVLGGSMSFNSSMNSASG 441

Query: 155 IKRAEQR 135
           +     R
Sbjct: 442 LNVGSSR 448