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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962779
Clone id TST39A01NGRL0014_M13
Library
Length 627
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_M13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCTTCTGAGATTGAAGGGAGCTTGGGCGATGGCGGTCTTTACCTTCGTATGCCGACATG
AGGACGGAACGTGGAGTGCGAAGCAGCAAAGTGGAGACCTTGAGGGGTCGGCAGATTCCG
CATTCGAGCTTCAACGCCATCTTTCCAAGCTGGCGTTCTCCTCTGCAGGATCCGGTGGCA
TCTCCTCCTCCTTCTCGTACATAACGCCCTCTGCTGCTGTTTTCCAGGTCATTGTTGGAG
GTGGTGGTGGTGGAAGCTTCATTGGTGGCGGCGGTGGTGCTGGAGCTGTGCCAGCTGCAG
CTGGTGGTGGAGCGGCCCCCGCTGTTGAGGAAAAGAAGGAAGAAGAAAAGAAAGAAGAAG
AAGAAAGTGATGATGATATGGGCTTCTCTTTGTTTGACTAGGTAAAGTGTAGCACAAGCT
GGAGGATGTTCTATCCATAGGTGAGCCAACAACGTAACTGTACTCTACAAGGAATTTAAC
AGTTTTGACAAAATGTGTTTTCCTCTTTCTTCTTCTGTAGTGTGGACACAGTATTTTACA
CATTTTGTGGTATGGGATTGTTGTCCATGGAAGGAGAGTATTGGAAACTTATTTCTGAGG
GTTTTCGTTATTCAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9SVZ6
Definition sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana
Align length 38
Score (bit) 53.9
E-value 6.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962779|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M13, 5'
         (613 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabi...    54   6e-07
sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays...    52   2e-06
sp|Q9LVC9|RLA32_ARATH 60S acidic ribosomal protein P3-2 OS=Arabi...    52   3e-06
sp|P56724|RLA3_ORYSJ 60S acidic ribosomal protein P3 OS=Oryza sa...    47   8e-05
sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha ...    30   7.5  

>sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1
           OS=Arabidopsis thaliana GN=RPP3A PE=1 SV=1
          Length = 119

 Score = 53.9 bits (128), Expect = 6e-07
 Identities = 24/38 (63%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VFTFVC++  G WSAKQ  G+LE SA S +ELQR L
Sbjct: 1   MGVFTFVCKNGGGAWSAKQHEGELESSASSTYELQRKL 38


>sp|O24413|RLA3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays
           GN=RPP3A PE=1 SV=3
          Length = 120

 Score = 52.0 bits (123), Expect = 2e-06
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M V+TFVCR+  G W+AKQ SG++E SA + +ELQR L
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRL 38


>sp|Q9LVC9|RLA32_ARATH 60S acidic ribosomal protein P3-2
           OS=Arabidopsis thaliana GN=RPP3B PE=2 SV=1
          Length = 120

 Score = 51.6 bits (122), Expect = 3e-06
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VF+FVC+ + G W+AKQ  GDLE SA S ++LQR L
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38


>sp|P56724|RLA3_ORYSJ 60S acidic ribosomal protein P3 OS=Oryza
           sativa subsp. japonica GN=Os06g0701400 PE=3 SV=3
          Length = 119

 Score = 47.0 bits (110), Expect = 8e-05
 Identities = 21/38 (55%), Positives = 26/38 (68%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M V+TFVCR     W+AKQ  G+LE SA + +ELQR L
Sbjct: 1   MGVYTFVCRSSGDEWTAKQLKGELEASAATPYELQRRL 38


>sp|P15389|SCN5A_RAT Sodium channel protein type 5 subunit alpha
           OS=Rattus norvegicus GN=Scn5a PE=2 SV=1
          Length = 2019

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +1

Query: 454 VTVLYKEFNSFDKMCFPLSSSVVWTQYFTHFVVWDCCPWKESI 582
           +T   +E     + C P      W ++  H+++W+CCP   SI
Sbjct: 670 LTSALEELEESHRKCPPC-----WNRFAQHYLIWECCPLWMSI 707
tr_hit_id A9NPS6
Definition tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 61
Score (bit) 57.8
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962779|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_M13, 5'
         (613 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea...    58   5e-07
tr|Q6Y1D6|Q6Y1D6_LACSA 60S acidic ribosomal protein P3 (Fragment...    55   2e-06
tr|Q6Y1D2|Q6Y1D2_9ASTR 60S acidic ribosomal protein P3 (Fragment...    55   2e-06
tr|Q6Y1D1|Q6Y1D1_9ASTR 60S acidic ribosomal protein P3 (Fragment...    55   2e-06
tr|Q6Y1D3|Q6Y1D3_9ASTR 60S acidic ribosomal protein P3 (Fragment...    54   9e-06
tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Popul...    53   2e-05
tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Popul...    53   2e-05
tr|B4G1B3|B4G1B3_MAIZE 60S acidic ribosomal protein P3 OS=Zea ma...    52   3e-05
tr|B3H523|B3H523_ARATH Uncharacterized protein At5g57290.2 OS=Ar...    52   4e-05
tr|B3H4N7|B3H4N7_ARATH Uncharacterized protein At5g57290.3 OS=Ar...    52   4e-05
tr|A7LIT3|A7LIT3_9ROSI Acidic ribosomal protein P3 OS=Corchorus ...    52   4e-05
tr|A7QLD3|A7QLD3_VITVI Chromosome chr11 scaffold_118, whole geno...    51   5e-05
tr|A5BBF0|A5BBF0_VITVI Putative uncharacterized protein OS=Vitis...    51   6e-05
tr|Q0D9S5|Q0D9S5_ORYSJ Os06g0701400 protein OS=Oryza sativa subs...    47   9e-04
tr|Q5NB69|Q5NB69_ORYSJ cDNA clone:002-128-C07, full insert seque...    47   0.001
tr|A2WMF3|A2WMF3_ORYSI Putative uncharacterized protein OS=Oryza...    47   0.001
tr|B6SQZ1|B6SQZ1_MAIZE 60S acidic ribosomal protein P3 OS=Zea ma...    46   0.001
tr|A9TMJ4|A9TMJ4_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9T572|A9T572_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.013
tr|Q6Y1D4|Q6Y1D4_LACSA 60S acidic ribosomal protein P3 (Fragment...    40   0.082
tr|A8B2S6|A8B2S6_GIALA Putative uncharacterized protein OS=Giard...    34   7.7  

>tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 121

 Score = 57.8 bits (138), Expect = 5e-07
 Identities = 27/61 (44%), Positives = 35/61 (57%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYITP 209
           M V+TF+C+   G W+AKQ SGDLEGSA S F+LQR L  +               Y++P
Sbjct: 1   MGVYTFICKSSGGEWNAKQYSGDLEGSAASTFDLQRQLVNVALRSEGSGPVSSSFSYVSP 60

Query: 210 S 212
           S
Sbjct: 61  S 61


>tr|Q6Y1D6|Q6Y1D6_LACSA 60S acidic ribosomal protein P3 (Fragment)
           OS=Lactuca sativa PE=4 SV=1
          Length = 112

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VFTFVC+   G W+AKQ  GDLEGSADS + LQR L
Sbjct: 1   MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 38


>tr|Q6Y1D2|Q6Y1D2_9ASTR 60S acidic ribosomal protein P3 (Fragment)
           OS=Lactuca saligna PE=4 SV=1
          Length = 119

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VFTFVC+   G W+AKQ  GDLEGSADS + LQR L
Sbjct: 9   MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 46


>tr|Q6Y1D1|Q6Y1D1_9ASTR 60S acidic ribosomal protein P3 (Fragment)
           OS=Lactuca saligna PE=4 SV=1
          Length = 119

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 25/38 (65%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VFTFVC+   G W+AKQ  GDLEGSADS + LQR L
Sbjct: 9   MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 46


>tr|Q6Y1D3|Q6Y1D3_9ASTR 60S acidic ribosomal protein P3 (Fragment)
           OS=Lactuca serriola PE=4 SV=1
          Length = 110

 Score = 53.5 bits (127), Expect = 9e-06
 Identities = 24/36 (66%), Positives = 27/36 (75%)
 Frame = +3

Query: 36  VFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           VFTFVC+   G W+AKQ  GDLEGSADS + LQR L
Sbjct: 1   VFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 36


>tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 39/124 (31%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQ-QSGDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYIT 206
           M VFTFVCR     WSAKQ   GD+E SA S FELQR L +                Y+T
Sbjct: 1   MGVFTFVCRCSGNEWSAKQIAEGDIEASASSTFELQRKLVQSALSADSSGGVQSSFSYVT 60

Query: 207 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGF 386
           PS                                                    DDDMGF
Sbjct: 61  PSSAVFQVIIGGGCGGAFFGGGGGGAAAAPAGGAAAAAEAPAAEEKKKEEEPESDDDMGF 120

Query: 387 SLFD 398
           SLFD
Sbjct: 121 SLFD 124


>tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 39/124 (31%), Positives = 43/124 (34%), Gaps = 1/124 (0%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQS-GDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYIT 206
           M VFTFVCR     WSAKQ S G++E SA S FELQR L +                Y+T
Sbjct: 1   MGVFTFVCRSSSNEWSAKQISDGNIEASASSTFELQRKLVQSALSADSSGAVQSSFSYVT 60

Query: 207 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGF 386
           PS                                                    DDDMGF
Sbjct: 61  PSSAVFQVVIGGSAGGAFFGGGGGGAVAAPAGGATAAAEAPAAEEKKKEEEPESDDDMGF 120

Query: 387 SLFD 398
           SLFD
Sbjct: 121 SLFD 124


>tr|B4G1B3|B4G1B3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays
           PE=4 SV=1
          Length = 120

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 29/38 (76%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M V+TFVCR+  G W+AKQ SG++E SA + +ELQR L
Sbjct: 1   MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRL 38


>tr|B3H523|B3H523_ARATH Uncharacterized protein At5g57290.2
           OS=Arabidopsis thaliana GN=At5g57290 PE=4 SV=1
          Length = 103

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VF+FVC+ + G W+AKQ  GDLE SA S ++LQR L
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38


>tr|B3H4N7|B3H4N7_ARATH Uncharacterized protein At5g57290.3
           OS=Arabidopsis thaliana GN=At5g57290 PE=4 SV=1
          Length = 119

 Score = 51.6 bits (122), Expect = 4e-05
 Identities = 22/38 (57%), Positives = 28/38 (73%)
 Frame = +3

Query: 30  MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 143
           M VF+FVC+ + G W+AKQ  GDLE SA S ++LQR L
Sbjct: 1   MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38