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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962803
Clone id TST39A01NGRL0014_N13
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_N13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTCATTGTGCAAGACGGAGGCTTCGCCTGCCTTTACTACTATGGCGCACAGGTGGGCTT
TAACCCCGTGCCGACGGGCTCTATCCCGGCCGAGTCTTTCTCGACAATATCAATTCCATT
GACTGTACAAGGCTCCGCACCCCTCCAAGGGACATACCTTCAAGGTGATGTAGCTGATGG
AATCCTTCAAGTATCGACTTCTGTTACCATTATTGGTAAGGTCACAACCCTCAATCTGTT
CACGCACCATGCCGACGTCGTCTCCAAATGTAACGTTGATGTATCTTTCAATGCCAGAGG
CATTCAGTCCTACACCTGTCAGAGAAGCTTTTCTATCAATCCATGACATACACACACACA
CACATACACACATAGCTATGCTGGGTTCGGCGACGCACATGTAGCTATAGTCGAATGCAT
CTCAGTCTTGTAAGAATTGAACAAAATCAGGAGTATGTATGCTGTTTTTCACTCATAATT
TTACATGCCATCTATAAAATCATGTAGACCTTGACGAATTTCAATGCATCTGAGCATTTG
ATGCCAGCTCATACTTGGGTTTATTGCTGTAATCGAATAATTTCTCTTGTGATAGTTTAC
ATAAAGAATAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q8K9P8
Definition sp|Q8K9P8|SOHB_BUCAP Probable protease sohB OS=Buchnera aphidicola subsp. Schizaphis graminum
Align length 51
Score (bit) 30.8
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962803|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_N13, 5'
         (602 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K9P8|SOHB_BUCAP Probable protease sohB OS=Buchnera aphidico...    31   5.5  
sp|Q7VV87|DXS_BORPE 1-deoxy-D-xylulose-5-phosphate synthase OS=B...    31   5.5  
sp|Q7W7Q0|DXS_BORPA 1-deoxy-D-xylulose-5-phosphate synthase OS=B...    31   5.5  
sp|Q7WL37|DXS_BORBR 1-deoxy-D-xylulose-5-phosphate synthase OS=B...    31   5.5  
sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204 ...    27   9.4  
sp|Q8STB5|Y111_ENCCU UPF0329 protein ECU01_0110/ECU01_1500/ECU08...    30   9.4  

>sp|Q8K9P8|SOHB_BUCAP Probable protease sohB OS=Buchnera aphidicola
           subsp. Schizaphis graminum GN=sohB PE=3 SV=1
          Length = 342

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 149 GTYLQGDVADGILQVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARG 301
           G Y+   VAD I  +S    IIG +  +    +   ++ KCN+DV  +  G
Sbjct: 173 GGYMMACVADYI--ISAPFAIIGSIGVVGQLPNFNKLLKKCNIDVELHTAG 221


>sp|Q7VV87|DXS_BORPE 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Bordetella pertussis GN=dxs PE=3 SV=1
          Length = 620

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 337 DRKASLTGVGLNASGIERYINVTFG 263
           D+ A L G+GL+A+GIER I   FG
Sbjct: 592 DQAALLAGLGLDAAGIERAIRARFG 616


>sp|Q7W7Q0|DXS_BORPA 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Bordetella parapertussis GN=dxs PE=3 SV=1
          Length = 620

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 337 DRKASLTGVGLNASGIERYINVTFG 263
           D+ A L G+GL+A+GIER I   FG
Sbjct: 592 DQAALLAGLGLDAAGIERAIRARFG 616


>sp|Q7WL37|DXS_BORBR 1-deoxy-D-xylulose-5-phosphate synthase
           OS=Bordetella bronchiseptica GN=dxs PE=3 SV=1
          Length = 620

 Score = 30.8 bits (68), Expect = 5.5
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = -2

Query: 337 DRKASLTGVGLNASGIERYINVTFG 263
           D+ A L G+GL+A+GIER I   FG
Sbjct: 592 DQAALLAGLGLDAAGIERAIRARFG 616


>sp|Q6ZRP5|YD019_HUMAN Putative uncharacterized protein FLJ46204
           OS=Homo sapiens PE=2 SV=2
          Length = 223

 Score = 27.3 bits (59), Expect(2) = 9.4
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 349 YTHTHIHT*LCWVRRR-TCSYSRMHLSLVRIEQNQEYVCC 465
           +THTH+HT    + R  T +++ MH  L  +     Y+ C
Sbjct: 171 HTHTHMHTHTSTLTRTLTLTHTHMHTFLSLVSHLAGYISC 210



 Score = 21.6 bits (44), Expect(2) = 9.4
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = +1

Query: 301 HSVLHLSEKLFYQSMTYTHTHIHT 372
           H+  H       +++T TH+H H+
Sbjct: 137 HAHTHAHSHYHTRTLTLTHSHAHS 160


>sp|Q8STB5|Y111_ENCCU UPF0329 protein
           ECU01_0110/ECU01_1500/ECU08_0040 OS=Encephalitozoon
           cuniculi GN=ECU01_0110 PE=3 SV=1
          Length = 592

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 20/56 (35%), Positives = 28/56 (50%)
 Frame = -2

Query: 322 LTGVGLNASGIERYINVTFGDDVGMVREQIEGCDLTNNGNRSRYLKDSISYITLKV 155
           L  V +NAS I    N TF + + MV E+I  CD   +   +RY +  I  I  K+
Sbjct: 109 LNNVSINASRIYIRGNKTFSEMLEMVYERIFECDSKGSRQMARYGESLIREIDSKM 164
tr_hit_id A9RUJ7
Definition tr|A9RUJ7|A9RUJ7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 103
Score (bit) 61.6
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962803|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_N13, 5'
         (602 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RUJ7|A9RUJ7_PHYPA Predicted protein OS=Physcomitrella paten...    62   3e-08
tr|Q9M386|Q9M386_ARATH Putative uncharacterized protein F24B22.1...    61   4e-08
tr|Q8LE22|Q8LE22_ARATH Putative uncharacterized protein OS=Arabi...    61   4e-08
tr|A2Y328|A2Y328_ORYSI Putative uncharacterized protein OS=Oryza...    53   2e-05
tr|A9T9T5|A9T9T5_PHYPA Predicted protein (Fragment) OS=Physcomit...    51   5e-05
tr|Q9T0A8|Q9T0A8_ARATH Putative uncharacterized protein AT4g2393...    50   8e-05
tr|Q3E6Y9|Q3E6Y9_ARATH Uncharacterized protein At4g23930.2 OS=Ar...    50   8e-05
tr|Q2QYH1|Q2QYH1_ORYSJ Os12g0119800 protein OS=Oryza sativa subs...    50   1e-04
tr|A2ZHI6|A2ZHI6_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|A2ZAV7|A2ZAV7_ORYSI Putative uncharacterized protein OS=Oryza...    50   1e-04
tr|Q2RB97|Q2RB97_ORYSJ Harpin-induced protein 1 containing prote...    49   2e-04
tr|A5CBV1|A5CBV1_VITVI Putative uncharacterized protein OS=Vitis...    49   2e-04
tr|A7PZK6|A7PZK6_VITVI Chromosome chr15 scaffold_40, whole genom...    48   4e-04
tr|A5BBS3|A5BBS3_VITVI Putative uncharacterized protein OS=Vitis...    48   4e-04
tr|Q1STP6|Q1STP6_MEDTR Harpin-induced 1 OS=Medicago truncatula G...    47   0.001
tr|A7QWD8|A7QWD8_VITVI Chromosome undetermined scaffold_203, who...    47   0.001
tr|Q5Z9B4|Q5Z9B4_ORYSJ Putative uncharacterized protein P0485D10...    46   0.002
tr|A3BC83|A3BC83_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A2YDJ2|A2YDJ2_ORYSI Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A7QU87|A7QU87_VITVI Chromosome chr2 scaffold_176, whole genom...    45   0.004
tr|A5B9J9|A5B9J9_VITVI Putative uncharacterized protein OS=Vitis...    45   0.004
tr|A9S559|A9S559_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.012
tr|Q19QU4|Q19QU4_SOLLC Plant cell wall protein SlTFR88 OS=Solanu...    43   0.016
tr|Q3EBB9|Q3EBB9_ARATH Uncharacterized protein At3g05975.1 (Puta...    42   0.027
tr|A5BYF8|A5BYF8_VITVI Putative uncharacterized protein OS=Vitis...    41   0.047
tr|A3A5B9|A3A5B9_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.061
tr|A2Y5U9|A2Y5U9_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.061
tr|A2X380|A2X380_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.061
tr|A9V0Z4|A9V0Z4_MONBE Predicted protein OS=Monosiga brevicollis...    37   0.68 
tr|Q69SA8|Q69SA8_ORYSJ Os07g0524200 protein OS=Oryza sativa subs...    36   1.5  

>tr|A9RUJ7|A9RUJ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_70743 PE=4 SV=1
          Length = 188

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 31/103 (30%), Positives = 53/103 (51%)
 Frame = +2

Query: 20  GFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQGTYLQGDVADGILQVST 199
           G   L+YYG  VG   +P G I +++   +S+ L V+ S  +    L G++  G L V  
Sbjct: 83  GLTRLFYYGDPVGQALIPAGKIKSKADEYLSVLLFVEASRVIMNANLPGNIVSGRLPVVA 142

Query: 200 SVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTCQRS 328
           + T+ G +  L +F HHA   S C++ +      +QS+ C+ +
Sbjct: 143 TTTLTGTLKVLGVFKHHALSTSDCDIFIFVANATVQSFYCRHA 185


>tr|Q9M386|Q9M386_ARATH Putative uncharacterized protein F24B22.160
           (Putative uncharacterized protein At3g54200)
           OS=Arabidopsis thaliana GN=F24B22.160 PE=2 SV=1
          Length = 235

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 34/105 (32%), Positives = 51/105 (48%)
 Frame = +2

Query: 14  DGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQGTYLQGDVADGILQV 193
           D   A L Y G  +G  P+P   I A     ++I LT+     L  T L  DV  G++ +
Sbjct: 128 DSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPL 187

Query: 194 STSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTCQRS 328
           +T V + GKVT L +F       S C++ +S + R + S  C+ S
Sbjct: 188 NTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSDRNVTSQHCKYS 232


>tr|Q8LE22|Q8LE22_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 235

 Score = 61.2 bits (147), Expect = 4e-08
 Identities = 34/105 (32%), Positives = 51/105 (48%)
 Frame = +2

Query: 14  DGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQGTYLQGDVADGILQV 193
           D   A L Y G  +G  P+P   I A     ++I LT+     L  T L  DV  G++ +
Sbjct: 128 DSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMADRLLSETQLLSDVMAGVIPL 187

Query: 194 STSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTCQRS 328
           +T V + GKVT L +F       S C++ +S + R + S  C+ S
Sbjct: 188 NTFVKVTGKVTVLKIFKIKVQSSSSCDLSISVSNRNVTSQHCKYS 232


>tr|A2Y328|A2Y328_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_19417 PE=4 SV=1
          Length = 213

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 7/110 (6%)
 Frame = +2

Query: 14  DGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTV-----QGSAPLQGTYLQGDV-- 172
           D G A +YY GA      VP G +       +++ LTV      G AP     L GDV  
Sbjct: 103 DAGRAEVYYRGALAADADVPPGRVAPRGSEALAVRLTVLADRLAGRAP----ELYGDVVG 158

Query: 173 ADGILQVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTCQ 322
           A G + ++   T+ G VT L +F  HA V++ C+V +S    G  S +C+
Sbjct: 159 AAGDVPLTVRTTVPGTVTVLGVFRRHAVVITACDVALSVRRPGAHSSSCR 208


>tr|A9T9T5|A9T9T5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_142345 PE=4 SV=1
          Length = 168

 Score = 51.2 bits (121), Expect = 5e-05
 Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 1/97 (1%)
 Frame = +2

Query: 32  LYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQGTYLQGD-VADGILQVSTSVT 208
           ++Y   QVG   +P G + A    T  + L VQ    L+G+    D V+ GI+ VS +  
Sbjct: 65  VFYQQIQVGHADIPAGQLGAGKTKTQIVTLNVQADKFLEGSNFTKDFVSAGIIPVSATTR 124

Query: 209 IIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           + G+V  LN++  H    S CN+ V    + + S+ C
Sbjct: 125 VRGEVNVLNIYKGHGVSYSWCNMSVFIVNQTLASFHC 161


>tr|Q9T0A8|Q9T0A8_ARATH Putative uncharacterized protein AT4g23930
           OS=Arabidopsis thaliana GN=AT4g23930 PE=2 SV=1
          Length = 187

 Score = 50.4 bits (119), Expect = 8e-05
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
 Frame = +2

Query: 32  LYYYGAQVGFNPVPTGSIPA-------ESFSTISIPLTVQGSAPLQGTYLQG-DVADGIL 187
           L+YYG ++G+  VP G I +        +FS  S PL    S+ +     Q  D +   +
Sbjct: 84  LFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTV 143

Query: 188 QVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           ++ + + + G+V  L LFTH       C + +S +   I +  C
Sbjct: 144 EIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 187


>tr|Q3E6Y9|Q3E6Y9_ARATH Uncharacterized protein At4g23930.2
           OS=Arabidopsis thaliana GN=At4g23930 PE=4 SV=1
          Length = 160

 Score = 50.4 bits (119), Expect = 8e-05
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 8/104 (7%)
 Frame = +2

Query: 32  LYYYGAQVGFNPVPTGSIPA-------ESFSTISIPLTVQGSAPLQGTYLQG-DVADGIL 187
           L+YYG ++G+  VP G I +        +FS  S PL    S+ +     Q  D +   +
Sbjct: 57  LFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASSSQISAAQFQNSDRSGSTV 116

Query: 188 QVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           ++ + + + G+V  L LFTH       C + +S +   I +  C
Sbjct: 117 EIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSIVAVRC 160


>tr|Q2QYH1|Q2QYH1_ORYSJ Os12g0119800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0119800 PE=2 SV=1
          Length = 233

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   FIVQDGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQG-TYLQGDVAD 178
           F    GG   L Y GA VG   +  G IP+   + +++ LT+Q        T L  DV  
Sbjct: 121 FTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMG 180

Query: 179 GILQVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           G + +  S  I G+V  L +F  HA   S C+         ++S  C
Sbjct: 181 GSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQC 227


>tr|A2ZHI6|A2ZHI6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37266 PE=4 SV=1
          Length = 233

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   FIVQDGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQG-TYLQGDVAD 178
           F    GG   L Y GA VG   +  G IP+   + +++ LT+Q        T L  DV  
Sbjct: 121 FTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMG 180

Query: 179 GILQVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           G + +  S  I G+V  L +F  HA   S C+         ++S  C
Sbjct: 181 GSVALDASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQC 227


>tr|A2ZAV7|A2ZAV7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_34899 PE=4 SV=1
          Length = 235

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
 Frame = +2

Query: 2   FIVQDGGFACLYYYGAQVGFNPVPTGSIPAESFSTISIPLTVQGSAPLQG-TYLQGDVAD 178
           F    GG   L Y GA VG   +  G IP+   + +++ LT+Q        T L  DV  
Sbjct: 123 FTYATGGHTDLTYRGAHVGDAEIDPGRIPSRGDANVTMALTLQADRFAGDLTQLVSDVMG 182

Query: 179 GILQVSTSVTIIGKVTTLNLFTHHADVVSKCNVDVSFNARGIQSYTC 319
           G + +  S  I G+V  L +F  HA   S C+         ++S  C
Sbjct: 183 GSVALEASTRIPGRVAILGVFKRHAVAYSDCHFVFGVTEMAVRSQQC 229