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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962806
Clone id TST39A01NGRL0014_N16
Library
Length 666
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_N16. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTATAGTGTTGGCGTGTAATCTTCCAAAGAACTCGCCAAACCTGGAGGCACAGGCAGAAA
TACAGCTTTTGCAGGAGCTAAAGACTTTGGGATTTGTAAACAGGGCCACTTCATAGACAT
ACTATATTTTAGTTAGTTGCCTTTACCATCAGAGCTAGCATGTCAGAAAGGTAAAAATTA
AGTGTCCCTTTAAGCTGTGAGTTGAGCTTTTCCAAGTAATGTGGAGGTAGGTAGAGACTA
CTACAGTGTATGGGCTTAACATTTGAAATGACCGTGGTGGAGTCATAGACGTAAAATCAA
GTAGCAGATGAAGAATTTCCTCCTTTCACCCTCCCATGTTAGGGAGCTTTGTTTCTGGTG
AATGTCATCTGATGGCTCCTACTTTTCTGTGGATTTGGCATCCTGTCTTTTTCTCTATAA
CAAACAAGCAAGCAGCTGTGGCATCCGTTGGTGCCTGCTCTTATCATTTATACACCATGT
AGACTTGAAGATGGTGGTGGATGGTTGGCTATGTGCTCCAAGAGAGGCAGATACATTTCC
TCTTTCCTTTGGCATTGGGTGTGCTTTGCCACGAGCATGTGAGGTCCAATGAAAGCTTTG
GAACGACCAGCTACACTCCAGCAGGATACCTAAACTCTGGTCAGTTACAATCAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id O31449
Definition sp|O31449|YBFI_BACSU Uncharacterized HTH-type transcriptional regulator ybfI OS=Bacillus subtilis
Align length 27
Score (bit) 31.2
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962806|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_N16, 5'
         (652 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O31449|YBFI_BACSU Uncharacterized HTH-type transcriptional re...    31   4.9  
sp|P39001|UME6_YEAST Transcriptional regulatory protein UME6 OS=...    30   8.4  
sp|Q8CC12|CDAN1_MOUSE Codanin-1 OS=Mus musculus GN=Cdan1 PE=2 SV=2     30   8.5  

>sp|O31449|YBFI_BACSU Uncharacterized HTH-type transcriptional
           regulator ybfI OS=Bacillus subtilis GN=ybfI PE=4 SV=1
          Length = 275

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -3

Query: 581 HMLVAKHTQCQRKEEMYLPLLEHIANH 501
           H+L+++  Q  RKEE++L LLE +  H
Sbjct: 127 HILISEEKQALRKEELFLHLLEELIRH 153


>sp|P39001|UME6_YEAST Transcriptional regulatory protein UME6
           OS=Saccharomyces cerevisiae GN=UME6 PE=1 SV=2
          Length = 836

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
 Frame = -3

Query: 407 DRMPNPQKSRSHQMTFTRNKAP*HGRVKGG------NSSSAT*FYVYDSTTVISNVKPIH 246
           +++P+   + +   T T N  P    +  G      +S  +T F+  D     +   P H
Sbjct: 419 NQIPSQPPTSASSFTSTNNNNPQRNNINRGEDPFATSSRPSTGFFYGDLPNRNNRNSPFH 478

Query: 245 CSSLYLPPHYLEKLNSQLKG 186
            +  Y+PP   + +NS+L G
Sbjct: 479 TNEQYIPPPPPKYINSKLDG 498


>sp|Q8CC12|CDAN1_MOUSE Codanin-1 OS=Mus musculus GN=Cdan1 PE=2 SV=2
          Length = 1239

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = -2

Query: 378 EPSDDIHQKQSSLTWEGERRKFFICYLILRL 286
           EP D+    +S + W+GERR+F +  L LRL
Sbjct: 612 EPGDE--DGESDMDWQGERRQFAVVLLSLRL 640
tr_hit_id Q2QWU1
Definition tr|Q2QWU1|Q2QWU1_ORYSJ cDNA, clone: J075097P21, full insert sequence OS=Oryza sativa subsp. japonica
Align length 32
Score (bit) 44.7
E-value 0.005
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962806|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_N16, 5'
         (652 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q2QWU1|Q2QWU1_ORYSJ cDNA, clone: J075097P21, full insert sequ...    45   0.005
tr|Q0IPM3|Q0IPM3_ORYSJ Os12g0182800 protein OS=Oryza sativa subs...    45   0.005
tr|B6UCI7|B6UCI7_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.005
tr|B6UC48|B6UC48_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.005
tr|B6SX94|B6SX94_MAIZE Putative uncharacterized protein OS=Zea m...    45   0.005
tr|A2ZIQ6|A2ZIQ6_ORYSI Putative uncharacterized protein OS=Oryza...    45   0.005
tr|A9SGZ2|A9SGZ2_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.042
tr|Q9LNH0|Q9LNH0_ARATH F21D18.10 OS=Arabidopsis thaliana PE=4 SV=1     41   0.072
tr|Q8VYQ0|Q8VYQ0_ARATH Putative uncharacterized protein At1g4817...    41   0.072
tr|A8J9P1|A8J9P1_CHLRE Predicted protein OS=Chlamydomonas reinha...    37   1.4  

>tr|Q2QWU1|Q2QWU1_ORYSJ cDNA, clone: J075097P21, full insert
           sequence OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g08230 PE=2 SV=1
          Length = 161

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++L+ LG+V
Sbjct: 117 IVLACNIPKDSPMLEAAAERKLIEKLRGLGYV 148


>tr|Q0IPM3|Q0IPM3_ORYSJ Os12g0182800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0182800 PE=4 SV=1
          Length = 165

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++L+ LG+V
Sbjct: 117 IVLACNIPKDSPMLEAAAERKLIEKLRGLGYV 148


>tr|B6UCI7|B6UCI7_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++LK LG++
Sbjct: 87  IVLACNIPKDSPILEAAAERKLVEKLKGLGYI 118


>tr|B6UC48|B6UC48_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++LK LG++
Sbjct: 87  IVLACNIPKDSPILEAAAERKLVEKLKGLGYI 118


>tr|B6SX94|B6SX94_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 131

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++LK LG++
Sbjct: 87  IVLACNIPKDSPILEAAAERKLVEKLKGLGYI 118


>tr|A2ZIQ6|A2ZIQ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37707 PE=4 SV=1
          Length = 161

 Score = 44.7 bits (104), Expect = 0.005
 Identities = 20/32 (62%), Positives = 28/32 (87%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFV 98
           IVLACN+PK+SP LEA AE +L+++L+ LG+V
Sbjct: 117 IVLACNIPKDSPMLEAAAERKLIEKLRGLGYV 148


>tr|A9SGZ2|A9SGZ2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164807 PE=4 SV=1
          Length = 141

 Score = 41.6 bits (96), Expect = 0.042
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGFVNRAT 110
           IVLA N+P N+P LEA AE +L QEL+++G++  A+
Sbjct: 93  IVLASNIPSNAPVLEAFAEQRLFQELRSMGYIKPAS 128


>tr|Q9LNH0|Q9LNH0_ARATH F21D18.10 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 222

 Score = 40.8 bits (94), Expect = 0.072
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGF 95
           I+LACN+PKN+P LEA+AE  L+++L  LG+
Sbjct: 183 IILACNIPKNNPLLEAKAEKVLIRKLIDLGY 213


>tr|Q8VYQ0|Q8VYQ0_ARATH Putative uncharacterized protein At1g48170
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At1g48170 PE=2 SV=1
          Length = 153

 Score = 40.8 bits (94), Expect = 0.072
 Identities = 18/31 (58%), Positives = 26/31 (83%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTLGF 95
           I+LACN+PKN+P LEA+AE  L+++L  LG+
Sbjct: 114 IILACNIPKNNPLLEAKAEKVLIRKLIDLGY 144


>tr|A8J9P1|A8J9P1_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_185179 PE=4 SV=1
          Length = 177

 Score = 36.6 bits (83), Expect = 1.4
 Identities = 16/29 (55%), Positives = 23/29 (79%)
 Frame = +3

Query: 3   IVLACNLPKNSPNLEAQAEIQLLQELKTL 89
           +V +CN+P NSP L+A AE +LLQEL+ +
Sbjct: 119 VVCSCNMPPNSPLLQAVAERRLLQELQLM 147