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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK962826
Clone id TST39A01NGRL0014_O12
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0014_O12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAATTCTTCTTCAGCTTCTGCTCCAAACACTGCAGGGACTTCCCCTTTTGCGATGGCAT
CTTCTGCCGCAGCTGGGGTAGGATCGCCTTTTGGAGCAACAAGCTTTGGGACTTCGTCAG
GTGCACTACCCACCCCTCTGTTCAGCTCGCCATCATCCACATCATTTGGTGCATCTTCAC
CGTTTTCATCATCATCCTCTCCATTTGGTGGTACGTCGGCGTCACCTTTGTTCAGCTTAA
CATCAGGCACACCTGCGGCTACTACTTCTTCGACTTTTTTTGGCACGAATTCTCAGCCAT
CTTCTTCAAGTATGCAATCCTTCAGCTTCTCATCAGCGCCAAAGACAACATCTTTCACTG
CTTTTTCAGCTACTCCAGCAACATTGTCTTCTTCAACGCCTACAAGTACTTCTGTGTTTA
GCGCATCTTTTCCTGTGGGTGGGAGCAACATATCCACATCCGAGTCCACATCTTCTCTAT
TTAGTAGCAGTTCTTTGGCACCTAGCATGTCATCATCTTTTTCTCCTTTTGGTGGCGGTG
GTAGTGCTATTGGTAGTGGCAGTCTGGGCAACATCTTTGGTAGCTCCGCTGGTTCTTCTT
CAAGTGCATCATCAGGTTCAGCTT
■■Homology search results ■■ -
sp_hit_id O20142
Definition sp|O20142|YCX5_CHLVU Uncharacterized 15.7 kDa protein in ycf4-trnK intergenic region OS=Chlorella vulgaris
Align length 59
Score (bit) 31.6
E-value 3.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962826|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_O12, 5'
         (611 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O20142|YCX5_CHLVU Uncharacterized 15.7 kDa protein in ycf4-tr...    32   3.3  
sp|Q28Z18|SETB1_DROPS Histone-lysine N-methyltransferase eggless...    31   4.4  
sp|A5CE49|GCP_ORITB Probable O-sialoglycoprotein endopeptidase O...    31   4.4  
sp|Q8U377|DPHB_PYRFU Probable diphthine synthase OS=Pyrococcus f...    31   4.4  
sp|Q67Q98|RUVA_SYMTH Holliday junction ATP-dependent DNA helicas...    31   5.7  
sp|Q7TNY7|MYRIP_RAT Rab effector MyRIP OS=Rattus norvegicus GN=M...    30   7.5  
sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP OS=Mus musculus GN=Myri...    30   7.5  
sp|Q5KK77|KYNU_CRYNE Kynureninase OS=Cryptococcus neoformans GN=...    30   7.5  
sp|P0C1J6|FKBP4_RHIOR FK506-binding protein 4 OS=Rhizopus oryzae...    30   7.5  
sp|P95297|NIFE_METTM Nitrogenase iron-molybdenum cofactor biosyn...    30   9.7  

>sp|O20142|YCX5_CHLVU Uncharacterized 15.7 kDa protein in ycf4-trnK
           intergenic region OS=Chlorella vulgaris PE=4 SV=1
          Length = 131

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
 Frame = +1

Query: 232 RHTCGYYFFDFFWHEFSAIFFKYAILQLL----ISAKDNIFHCFFSYSSNIVFFNAYKY 396
           R   GY+F  FF+H ++ +F K  ++ L     IS+K N     F     I+FF+  K+
Sbjct: 58  RKVLGYFFKMFFYHNYNFVFTKLKLICLFLIISISSKKN-----FKLKVLILFFSIQKF 111


>sp|Q28Z18|SETB1_DROPS Histone-lysine N-methyltransferase eggless
           OS=Drosophila pseudoobscura pseudoobscura GN=egg PE=3
           SV=1
          Length = 1314

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = -3

Query: 486 AKELLLNREDVDSDVDMLLPPTGKDALNTEVLVGVEEDNVAGVAEKAVKDVVFGADEKLK 307
           +KE   +    DS ++++  PT  D+L  E  V V+E++      + ++++   AD+  K
Sbjct: 157 SKESSKSEALADSSIELISSPTSDDSLAKEKEVEVKEEHGQQAEAQVLQEIPRKADDSFK 216

Query: 306 ---DCILEED 286
              D  +EED
Sbjct: 217 LQDDIAMEED 226


>sp|A5CE49|GCP_ORITB Probable O-sialoglycoprotein endopeptidase
           OS=Orientia tsutsugamushi (strain Boryong) GN=gcp PE=3
           SV=1
          Length = 344

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 292 FKYAILQLLISAKDNIFHCFFSYSSNIVFFNAYKYFCV*RIFSCGWEQHIHIRVHIFSI 468
           F+Y ++Q+L+    N    F SY SN    N   YF    + S G   + ++R  IF++
Sbjct: 239 FQYTVVQILLCRSINAIKLFESYCSNNFKINRKNYF----VISGGVAANQYLRQEIFNL 293


>sp|Q8U377|DPHB_PYRFU Probable diphthine synthase OS=Pyrococcus
           furiosus GN=dphB PE=3 SV=1
          Length = 269

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 12/33 (36%), Positives = 24/33 (72%)
 Frame = -3

Query: 510 EKDDDMLGAKELLLNREDVDSDVDMLLPPTGKD 412
           EK ++++G K ++LNREDV+ + + ++ P  K+
Sbjct: 45  EKIEEVIGKKIIVLNREDVEMNFEKIVLPEAKE 77


>sp|Q67Q98|RUVA_SYMTH Holliday junction ATP-dependent DNA helicase
           ruvA OS=Symbiobacterium thermophilum GN=ruvA PE=3 SV=1
          Length = 205

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 16/36 (44%), Positives = 19/36 (52%)
 Frame = -3

Query: 138 GELNRGVGSAPDEVPKLVAPKGDPTPAAAEDAIAKG 31
           G +  G G  PD +P  VAP GD    A+E  IA G
Sbjct: 133 GAVPAGGGGVPDGLPVAVAPAGDAWAEASEALIALG 168


>sp|Q7TNY7|MYRIP_RAT Rab effector MyRIP OS=Rattus norvegicus
           GN=Myrip PE=2 SV=1
          Length = 856

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -1

Query: 602 LMMHLKKNQRSYQRCCPDCHYQ*HYHRHQKEKKMMTC*VPKNCY*IEKMWTRMWICCSHP 423
           L  H K  +R   RCC    +  +  R   E K   C   K+C   +K   ++W+CC   
Sbjct: 53  LSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVC---KSCCSYQKH-EKLWVCCVCQ 108

Query: 422 QEKMR*TQ 399
           Q ++  TQ
Sbjct: 109 QARLLRTQ 116


>sp|Q8K3I4|MYRIP_MOUSE Rab effector MyRIP OS=Mus musculus GN=Myrip
           PE=1 SV=1
          Length = 856

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = -1

Query: 602 LMMHLKKNQRSYQRCCPDCHYQ*HYHRHQKEKKMMTC*VPKNCY*IEKMWTRMWICCSHP 423
           L  H K  +R   RCC    +  +  R   E K   C   K+C   +K   ++W+CC   
Sbjct: 53  LSKHQKFVERCCMRCCSPFTFLVNARRRCGECKFSVC---KSCCSYQKH-EKLWVCCVCQ 108

Query: 422 QEKMR*TQ 399
           Q ++  TQ
Sbjct: 109 QARLLRTQ 116


>sp|Q5KK77|KYNU_CRYNE Kynureninase OS=Cryptococcus neoformans
           GN=BNA5 PE=3 SV=1
          Length = 453

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -3

Query: 474 LLNREDVDSDVDMLLPPTGKDALNTEVLVGVEEDNVAGVA 355
           +L  E +D+ +  L+P  G+D L TE ++ V +DN   +A
Sbjct: 159 VLRPEQIDNAIIALVPREGEDTLRTEDILKVLDDNKDSIA 198


>sp|P0C1J6|FKBP4_RHIOR FK506-binding protein 4 OS=Rhizopus oryzae
           GN=FKBP4 PE=3 SV=1
          Length = 382

 Score = 30.4 bits (67), Expect = 7.5
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = -3

Query: 510 EKDDDMLGAKELLLNREDVDSDVDMLLPPTGKDALNTEVLVGVEEDNVAGVAEKAVKDVV 331
           + +DD +GA  +  + ED   D    LPP        + L+G+E D      E+   D  
Sbjct: 98  DDEDDEMGASMIDSDEEDNVEDFLKKLPPNASKEDINKALLGLEVDEEIESDEEVESDEE 157

Query: 330 FGADEKLKDCILEED 286
             +DE+++    EE+
Sbjct: 158 IESDEEIESEEEEEE 172


>sp|P95297|NIFE_METTM Nitrogenase iron-molybdenum cofactor
           biosynthesis protein nifE OS=Methanobacterium
           thermoautotrophicum (strain Marburg / DSM 2133) GN=nifE
           PE=3 SV=1
          Length = 480

 Score = 30.0 bits (66), Expect = 9.7
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -3

Query: 342 KDVVFGADEKLKDCILE 292
           KDVVFG ++KL +CILE
Sbjct: 121 KDVVFGGEDKLLECILE 137
tr_hit_id B0WTJ4
Definition tr|B0WTJ4|B0WTJ4_CULQU Zinc finger protein OS=Culex quinquefasciatus
Align length 43
Score (bit) 38.1
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK962826|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0014_O12, 5'
         (611 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0WTJ4|B0WTJ4_CULQU Zinc finger protein OS=Culex quinquefasci...    38   0.40 
tr|A7P7L9|A7P7L9_VITVI Chromosome chr9 scaffold_7, whole genome ...    35   3.4  
tr|B1ZL01|B1ZL01_METPB Helicase domain protein OS=Methylobacteri...    35   4.5  
tr|A6X0M3|A6X0M3_OCHA4 Pyruvate dehydrogenase complex dihydrolip...    35   4.5  
tr|A7TEI7|A7TEI7_VANPO Putative uncharacterized protein OS=Vande...    34   7.6  
tr|Q7RQJ8|Q7RQJ8_PLAYO Putative uncharacterized protein PY01098 ...    33   10.0 
tr|B6PBB6|B6PBB6_BRAFL Putative uncharacterized protein (Fragmen...    33   10.0 
tr|B6MNU5|B6MNU5_BRAFL Putative uncharacterized protein OS=Branc...    33   10.0 

>tr|B0WTJ4|B0WTJ4_CULQU Zinc finger protein OS=Culex
           quinquefasciatus GN=CpipJ_CPIJ010644 PE=4 SV=1
          Length = 600

 Score = 38.1 bits (87), Expect = 0.40
 Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
 Frame = -1

Query: 611 KLNLMMHLKKNQRSYQRCCPDC--------HYQ*HYHRHQKEK 507
           K NL MH++K+Q ++   CPDC        H + HY  H KEK
Sbjct: 495 KSNLKMHMRKHQDTFFYACPDCPKQFKNNSHLKEHYKVHSKEK 537


>tr|A7P7L9|A7P7L9_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034515001
           PE=3 SV=1
          Length = 1437

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 20/80 (25%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
 Frame = +1

Query: 196 WY--VGVTFVQLNIRHTCGYYFFDFFWHEFSAIFFKYAILQLLISAKDNIFHCFFSYSSN 369
           W+  + +TFV++ +     YY   F       +F +Y +L LL     ++F    + S N
Sbjct: 605 WFLKIPITFVEVGVWVFITYYVIGFD-PNVGRLFRQYLLLLLLNQVASSLFRFIAAASRN 663

Query: 370 IVFFNAYKYFCV*RIFSCGW 429
           ++  N +  FC+      GW
Sbjct: 664 MIIANTFGTFCITFTLCIGW 683


>tr|B1ZL01|B1ZL01_METPB Helicase domain protein OS=Methylobacterium
            populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
            GN=Mpop_4904 PE=4 SV=1
          Length = 1138

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 19/38 (50%), Positives = 23/38 (60%)
 Frame = -3

Query: 114  SAPDEVPKLVAPKGDPTPAAAEDAIAKGEVPAVFGAEA 1
            SA +  P+  AP    T AAAEDA A GEV AV  A++
Sbjct: 929  SAEEATPEAAAPLPAETAAAAEDAAATGEVEAVDAADS 966


>tr|A6X0M3|A6X0M3_OCHA4 Pyruvate dehydrogenase complex
           dihydrolipoamide acetyltransferase OS=Ochrobactrum
           anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168)
           GN=Oant_2061 PE=3 SV=1
          Length = 444

 Score = 34.7 bits (78), Expect = 4.5
 Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 126 RGVGSAPDEVPKLVAPKGDPTPAAAEDAI---AKGEVPA 19
           +G  SAP+   K+ APK +P PAAA  A+   AK E PA
Sbjct: 89  KGAASAPNTEAKVEAPKEEPKPAAAPAAVPAPAKAEQPA 127


>tr|A7TEI7|A7TEI7_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1036p37 PE=4 SV=1
          Length = 2493

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
 Frame = +1

Query: 187 SIWWYVGVTFVQLNIRHTCGYY--FFDFFWHEFSAIFFKYAILQLLISAKDNIFHCFFSY 360
           S+ +  G  F  L+I++   Y+  FF+F+ ++F + F ++  L L +SA           
Sbjct: 355 SLAFLFGTLFRNLDIKNLTIYHKKFFEFYQNKFPSFFIEFFRLSLDMSA----------- 403

Query: 361 SSNIVFFNAYKYF 399
            SN++ FN  KYF
Sbjct: 404 -SNVLSFNGTKYF 415


>tr|Q7RQJ8|Q7RQJ8_PLAYO Putative uncharacterized protein PY01098
           OS=Plasmodium yoelii yoelii GN=PY01098 PE=4 SV=1
          Length = 1866

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 8/77 (10%)
 Frame = +1

Query: 199 YVGVTFVQLNIRHTCGYYFFDFFWHEF-SAIFFKYAILQLL--ISAKDNIFHCFF----- 354
           Y+    +     H C    FD F+ EF ++IF KY I+ LL  +   DNI   F+     
Sbjct: 172 YINYLNILFKETHNCDI-LFDVFYLEFENSIFIKYEIILLLQKLYIYDNINFYFYLYENI 230

Query: 355 SYSSNIVFFNAYKYFCV 405
            YS NI     Y  FCV
Sbjct: 231 VYSDNINSCYYYNLFCV 247


>tr|B6PBB6|B6PBB6_BRAFL Putative uncharacterized protein (Fragment)
           OS=Branchiostoma floridae GN=BRAFLDRAFT_246817 PE=4 SV=1
          Length = 278

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 587 KKNQRSYQRCCPDCHYQ*HYHRHQKEKK 504
           KKN     R CPDC Y+ +YH  +KE K
Sbjct: 174 KKNALVKLRLCPDCSYKLNYHHKRKEAK 201


>tr|B6MNU5|B6MNU5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_59440 PE=4 SV=1
          Length = 255

 Score = 33.5 bits (75), Expect = 10.0
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 587 KKNQRSYQRCCPDCHYQ*HYHRHQKEKK 504
           KKN     R CPDC Y+ +YH  +KE K
Sbjct: 147 KKNALVKLRLCPDCSYKLNYHHKRKEAK 174